Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17365 and BWI76_RS17370 are separated by 9 nucleotides BWI76_RS17370 and BWI76_RS17375 are separated by 10 nucleotides BWI76_RS17375 and BWI76_RS17380 are separated by 1 nucleotides
BWI76_RS17365: BWI76_RS17365 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) <small>(from data)</small>, at 3,600,666 to 3,604,736
_RS17365
BWI76_RS17370: BWI76_RS17370 - nitrate transporter NasD, at 3,604,746 to 3,605,534
_RS17370
BWI76_RS17375: BWI76_RS17375 - nitrate ABC transporter, permease protein, at 3,605,545 to 3,606,429
_RS17375
BWI76_RS17380: BWI76_RS17380 - nitrate transporter component, at 3,606,431 to 3,607,687
_RS17380
Position (kb) 3605
3606
3607 Strain fitness (log2 ratio) -1
0
1 at 3604.807 kb on - strand at 3605.341 kb on + strand, within BWI76_RS17370 at 3605.452 kb on - strand, within BWI76_RS17370 at 3605.877 kb on + strand, within BWI76_RS17375 at 3606.323 kb on - strand, within BWI76_RS17375 at 3606.793 kb on + strand, within BWI76_RS17380 at 3607.015 kb on + strand, within BWI76_RS17380
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,604,807 - +0.5 3,605,341 + BWI76_RS17370 0.75 -0.4 3,605,452 - BWI76_RS17370 0.89 -0.7 3,605,877 + BWI76_RS17375 0.38 +0.5 3,606,323 - BWI76_RS17375 0.88 +0.5 3,606,793 + BWI76_RS17380 0.29 +0.3 3,607,015 + BWI76_RS17380 0.46 -0.3
Or see this region's nucleotide sequence