Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17175 and BWI76_RS17180 are separated by 92 nucleotides BWI76_RS17180 and BWI76_RS17185 are separated by 106 nucleotides BWI76_RS17185 and BWI76_RS17190 are separated by 19 nucleotides
BWI76_RS17175: BWI76_RS17175 - 6-phosphofructokinase II, at 3,560,009 to 3,560,941
_RS17175
BWI76_RS17180: BWI76_RS17180 - hypothetical protein, at 3,561,034 to 3,561,318
_RS17180
BWI76_RS17185: BWI76_RS17185 - fructosamine kinase family protein, at 3,561,425 to 3,562,297
_RS17185
BWI76_RS17190: BWI76_RS17190 - TonB system transport protein TonB, at 3,562,317 to 3,563,054
_RS17190
Position (kb) 3561
3562 Strain fitness (log2 ratio) -1
0
1 at 3560.039 kb on - strand at 3560.041 kb on + strand at 3560.140 kb on + strand, within BWI76_RS17175 at 3560.934 kb on + strand at 3561.067 kb on + strand, within BWI76_RS17180 at 3561.144 kb on - strand, within BWI76_RS17180 at 3561.261 kb on + strand, within BWI76_RS17180 at 3561.767 kb on + strand, within BWI76_RS17185 at 3562.198 kb on + strand, within BWI76_RS17185
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,560,039 - +0.8 3,560,041 + -0.1 3,560,140 + BWI76_RS17175 0.14 +1.4 3,560,934 + -0.8 3,561,067 + BWI76_RS17180 0.12 +0.7 3,561,144 - BWI76_RS17180 0.39 +1.4 3,561,261 + BWI76_RS17180 0.80 +0.2 3,561,767 + BWI76_RS17185 0.39 -0.4 3,562,198 + BWI76_RS17185 0.89 -0.2
Or see this region's nucleotide sequence