Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15265 and BWI76_RS15270 are separated by 142 nucleotides BWI76_RS15270 and BWI76_RS15275 are separated by 9 nucleotides BWI76_RS15275 and BWI76_RS15280 are separated by 204 nucleotides
BWI76_RS15265: BWI76_RS15265 - hypothetical protein, at 3,198,817 to 3,200,097
_RS15265
BWI76_RS15270: BWI76_RS15270 - phenazine biosynthesis protein PhzF family, at 3,200,240 to 3,201,028
_RS15270
BWI76_RS15275: BWI76_RS15275 - isomerase, at 3,201,038 to 3,201,829
_RS15275
BWI76_RS15280: BWI76_RS15280 - sugar transporter, at 3,202,034 to 3,203,233
_RS15280
Position (kb)
3201
3202 Strain fitness (log2 ratio)
-1
0
1 at 3200.165 kb on + strand at 3200.241 kb on - strand at 3200.246 kb on - strand at 3200.246 kb on - strand at 3200.653 kb on + strand, within BWI76_RS15270 at 3200.875 kb on + strand, within BWI76_RS15270 at 3200.896 kb on + strand, within BWI76_RS15270 at 3201.277 kb on - strand, within BWI76_RS15275 at 3201.401 kb on - strand, within BWI76_RS15275 at 3201.406 kb on - strand, within BWI76_RS15275 at 3201.664 kb on + strand, within BWI76_RS15275 at 3201.839 kb on - strand at 3201.924 kb on + strand at 3202.023 kb on + strand at 3202.138 kb on + strand at 3202.233 kb on + strand, within BWI76_RS15280 at 3202.605 kb on - strand, within BWI76_RS15280
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,200,165 + -1.3 3,200,241 - -0.3 3,200,246 - -0.3 3,200,246 - +0.0 3,200,653 + BWI76_RS15270 0.52 -0.5 3,200,875 + BWI76_RS15270 0.80 -0.2 3,200,896 + BWI76_RS15270 0.83 -0.2 3,201,277 - BWI76_RS15275 0.30 +0.6 3,201,401 - BWI76_RS15275 0.46 +0.1 3,201,406 - BWI76_RS15275 0.46 +0.7 3,201,664 + BWI76_RS15275 0.79 +0.3 3,201,839 - +0.1 3,201,924 + -1.2 3,202,023 + -0.5 3,202,138 + -0.2 3,202,233 + BWI76_RS15280 0.17 -0.9 3,202,605 - BWI76_RS15280 0.48 -0.6
Or see this region's nucleotide sequence