Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10520 and BWI76_RS10525 are separated by 109 nucleotides BWI76_RS10525 and BWI76_RS10530 are separated by 143 nucleotides BWI76_RS10530 and BWI76_RS10535 overlap by 1 nucleotides
BWI76_RS10520: BWI76_RS10520 - guanine deaminase, at 2,222,393 to 2,223,712
_RS10520
BWI76_RS10525: BWI76_RS10525 - cytosine/purines uracil thiamine allantoin permease, at 2,223,822 to 2,225,309
_RS10525
BWI76_RS10530: BWI76_RS10530 - GntR family transcriptional regulator with, at 2,225,453 to 2,226,169
_RS10530
BWI76_RS10535: BWI76_RS10535 - Asp/Glu/hydantoin racemase, at 2,226,169 to 2,226,912
_RS10535
Position (kb)
2223
2224
2225
2226 Strain fitness (log2 ratio)
-2
-1
0
1 at 2222.874 kb on + strand, within BWI76_RS10520 at 2222.973 kb on + strand, within BWI76_RS10520 at 2223.258 kb on + strand, within BWI76_RS10520 at 2223.411 kb on - strand, within BWI76_RS10520 at 2223.419 kb on - strand, within BWI76_RS10520 at 2223.564 kb on + strand, within BWI76_RS10520 at 2223.661 kb on - strand at 2223.998 kb on - strand, within BWI76_RS10525 at 2224.400 kb on + strand, within BWI76_RS10525 at 2224.465 kb on - strand, within BWI76_RS10525 at 2224.654 kb on - strand, within BWI76_RS10525 at 2224.798 kb on - strand, within BWI76_RS10525 at 2225.061 kb on - strand, within BWI76_RS10525 at 2225.061 kb on - strand, within BWI76_RS10525 at 2225.151 kb on - strand, within BWI76_RS10525 at 2225.283 kb on - strand at 2225.358 kb on - strand at 2225.716 kb on - strand, within BWI76_RS10530 at 2225.939 kb on + strand, within BWI76_RS10530
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,222,874 + BWI76_RS10520 0.36 -0.4 2,222,973 + BWI76_RS10520 0.44 -0.2 2,223,258 + BWI76_RS10520 0.66 -0.1 2,223,411 - BWI76_RS10520 0.77 +0.0 2,223,419 - BWI76_RS10520 0.78 -0.1 2,223,564 + BWI76_RS10520 0.89 +0.2 2,223,661 - -0.2 2,223,998 - BWI76_RS10525 0.12 -0.3 2,224,400 + BWI76_RS10525 0.39 +0.0 2,224,465 - BWI76_RS10525 0.43 +0.3 2,224,654 - BWI76_RS10525 0.56 -0.3 2,224,798 - BWI76_RS10525 0.66 -2.5 2,225,061 - BWI76_RS10525 0.83 -0.3 2,225,061 - BWI76_RS10525 0.83 +0.1 2,225,151 - BWI76_RS10525 0.89 +0.2 2,225,283 - -0.2 2,225,358 - -0.3 2,225,716 - BWI76_RS10530 0.37 -0.6 2,225,939 + BWI76_RS10530 0.68 +0.2
Or see this region's nucleotide sequence