Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00960 and BWI76_RS00965 overlap by 4 nucleotides BWI76_RS00965 and BWI76_RS00970 are separated by 16 nucleotides
BWI76_RS00960: BWI76_RS00960 - acetolactate synthase 2 catalytic subunit, at 195,387 to 197,033
_RS00960
BWI76_RS00965: BWI76_RS00965 - acetolactate synthase 2 small subunit, at 197,030 to 197,287
_RS00965
BWI76_RS00970: BWI76_RS00970 - branched chain amino acid aminotransferase, at 197,304 to 198,233
_RS00970
Position (kb) 197
198 Strain fitness (log2 ratio) -1
0
1 at 196.149 kb on - strand, within BWI76_RS00960 at 196.149 kb on - strand, within BWI76_RS00960 at 196.541 kb on - strand, within BWI76_RS00960 at 196.597 kb on + strand at 196.605 kb on - strand, within BWI76_RS00960 at 196.754 kb on + strand, within BWI76_RS00960 at 196.869 kb on + strand at 196.933 kb on + strand at 196.941 kb on - strand at 196.973 kb on + strand at 196.981 kb on - strand at 197.236 kb on - strand, within BWI76_RS00965 at 197.330 kb on - strand at 197.383 kb on + strand at 197.399 kb on - strand, within BWI76_RS00970 at 197.484 kb on + strand, within BWI76_RS00970 at 197.484 kb on + strand, within BWI76_RS00970 at 197.540 kb on + strand, within BWI76_RS00970 at 197.540 kb on + strand, within BWI76_RS00970 at 197.686 kb on + strand, within BWI76_RS00970 at 198.044 kb on + strand, within BWI76_RS00970 at 198.112 kb on + strand, within BWI76_RS00970 at 198.168 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 196,149 - BWI76_RS00960 0.46 -0.2 196,149 - BWI76_RS00960 0.46 +0.6 196,541 - BWI76_RS00960 0.70 -0.1 196,597 + +0.7 196,605 - BWI76_RS00960 0.74 +0.3 196,754 + BWI76_RS00960 0.83 -0.8 196,869 + +0.2 196,933 + -0.0 196,941 - -0.2 196,973 + +0.1 196,981 - +0.7 197,236 - BWI76_RS00965 0.80 +0.5 197,330 - +0.7 197,383 + +0.4 197,399 - BWI76_RS00970 0.10 +0.4 197,484 + BWI76_RS00970 0.19 -0.4 197,484 + BWI76_RS00970 0.19 -1.5 197,540 + BWI76_RS00970 0.25 +0.0 197,540 + BWI76_RS00970 0.25 -0.1 197,686 + BWI76_RS00970 0.41 +1.3 198,044 + BWI76_RS00970 0.80 +0.5 198,112 + BWI76_RS00970 0.87 -0.5 198,168 + +0.1
Or see this region's nucleotide sequence