Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4008

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
4,771,377	+		Psyr_4007	0.25	-2.0
4,771,377	+		Psyr_4007	0.25	-1.3
4,771,378	-		Psyr_4007	0.25	-1.0
4,771,378	-				+0.7
4,771,440	+		Psyr_4007	0.31	-0.9
4,771,440	+		Psyr_4007	0.31	-0.4
4,771,441	-		Psyr_4007	0.31	-0.8
4,771,551	+		Psyr_4007	0.40	-0.5
4,771,571	+		Psyr_4007	0.42	-0.7
4,771,571	+		Psyr_4007	0.42	-1.2
4,771,571	+		Psyr_4007	0.42	-1.8
4,771,571	+		Psyr_4007	0.42	-1.1
4,771,571	+		Psyr_4007	0.42	-0.3
4,771,572	-		Psyr_4007	0.42	-0.4
4,771,572	-		Psyr_4007	0.42	-0.4
4,771,671	+		Psyr_4007	0.51	-0.3
4,771,671	+		Psyr_4007	0.51	-0.5
4,771,671	+		Psyr_4007	0.51	+0.6
4,771,671	+		Psyr_4007	0.51	-0.7
4,771,671	+		Psyr_4007	0.51	-0.7
4,771,671	+		Psyr_4007	0.51	-0.3
4,771,671	+		Psyr_4007	0.51	-1.7
4,771,671	+		Psyr_4007	0.51	-1.0
4,771,671	+		Psyr_4007	0.51	+0.5
4,771,671	+		Psyr_4007	0.51	+0.3
4,771,671	+		Psyr_4007	0.51	-1.1
4,771,671	+		Psyr_4007	0.51	+0.0
4,771,671	+		Psyr_4007	0.51	-0.8
4,771,671	+		Psyr_4007	0.51	-1.3
4,771,672	-		Psyr_4007	0.51	-1.8
4,771,672	-		Psyr_4007	0.51	-1.0
4,771,672	-		Psyr_4007	0.51	-0.8
4,771,672	-		Psyr_4007	0.51	-2.1
4,771,672	-		Psyr_4007	0.51	-2.5
4,771,672	-		Psyr_4007	0.51	-3.3
4,771,797	+		Psyr_4007	0.61	-0.3
4,771,831	+		Psyr_4007	0.64	-1.0
4,771,832	-		Psyr_4007	0.65	+1.0
4,772,042	+		Psyr_4007	0.83	-1.3
4,772,042	+		Psyr_4007	0.83	+0.0
4,772,043	-		Psyr_4007	0.83	-0.1
4,772,133	+				-1.0
4,772,133	+				+0.8
4,772,134	-				-2.0
4,772,134	-				+0.0
4,772,134	-				+0.3
4,772,134	-				-1.7
4,772,217	-				-1.0
4,772,349	+				-2.1
4,772,391	+				+0.2
4,772,392	-				-2.1
4,772,475	+				-2.1
4,772,475	+				-0.6
4,772,476	-				-0.7
4,772,493	-				-0.8
4,772,493	-				-0.5
4,772,715	+		Psyr_4008	0.15	-0.5
4,772,715	+		Psyr_4008	0.15	-0.4
4,772,715	+		Psyr_4008	0.15	-1.1
4,772,715	+		Psyr_4008	0.15	-0.8
4,772,715	+		Psyr_4008	0.15	-0.5
4,772,715	+		Psyr_4008	0.15	+0.5
4,772,715	+		Psyr_4008	0.15	-0.4
4,772,715	+		Psyr_4008	0.15	-0.5
4,772,715	+		Psyr_4008	0.15	-0.7
4,772,715	+		Psyr_4008	0.15	-2.0
4,772,715	+		Psyr_4008	0.15	+0.0
4,772,715	+		Psyr_4008	0.15	-2.1
4,772,715	+		Psyr_4008	0.15	-2.7
4,772,715	+		Psyr_4008	0.15	-0.8
4,772,715	+		Psyr_4008	0.15	-1.4
4,772,715	+		Psyr_4008	0.15	-2.1
4,772,715	+		Psyr_4008	0.15	-1.3
4,772,715	+		Psyr_4008	0.15	-1.6
4,772,716	-		Psyr_4008	0.15	+1.4
4,772,716	-		Psyr_4008	0.15	-1.5
4,772,716	-		Psyr_4008	0.15	-1.4
4,772,716	-		Psyr_4008	0.15	-0.5
4,772,716	-		Psyr_4008	0.15	+0.4
4,772,716	-		Psyr_4008	0.15	+0.1
4,772,716	-		Psyr_4008	0.15	-0.5
4,772,716	-		Psyr_4008	0.15	+0.6
4,772,716	-		Psyr_4008	0.15	-4.2
4,772,716	-		Psyr_4008	0.15	-1.3
4,772,716	-		Psyr_4008	0.15	-1.1
4,772,791	-		Psyr_4008	0.17	-1.8
4,772,801	+		Psyr_4008	0.18	+0.6
4,772,802	-		Psyr_4008	0.18	-1.7
4,772,802	-		Psyr_4008	0.18	-0.8
4,772,802	-		Psyr_4008	0.18	-0.2
4,772,802	-		Psyr_4008	0.18	+0.3
4,772,802	-		Psyr_4008	0.18	-0.6
4,772,802	-		Psyr_4008	0.18	-1.1
4,773,045	-		Psyr_4008	0.25	-1.5
4,773,069	+		Psyr_4008	0.26	-2.9
4,773,069	+		Psyr_4008	0.26	+0.0
4,773,312	+		Psyr_4008	0.34	-2.3
4,773,312	+		Psyr_4008	0.34	+1.0
4,773,312	+		Psyr_4008	0.34	+1.0
4,773,312	+		Psyr_4008	0.34	-0.5
4,773,312	+		Psyr_4008	0.34	-0.5
4,773,312	+		Psyr_4008	0.34	-1.9
4,773,313	-		Psyr_4008	0.34	-3.7
4,773,313	-		Psyr_4008	0.34	-0.4
4,773,313	-		Psyr_4008	0.34	+1.0
4,773,313	-		Psyr_4008	0.34	+0.3
4,773,313	-		Psyr_4008	0.34	-2.1
4,773,313	-		Psyr_4008	0.34	-0.3
4,773,313	-		Psyr_4008	0.34	-0.9
4,773,313	-		Psyr_4008	0.34	-0.3
4,773,380	+		Psyr_4008	0.36	-1.5
4,773,438	-		Psyr_4008	0.38	-1.1
4,773,645	+		Psyr_4008	0.45	-2.3
4,773,645	+		Psyr_4008	0.45	-0.5
4,773,645	+		Psyr_4008	0.45	-1.5
4,773,645	+		Psyr_4008	0.45	-1.1
4,773,645	+		Psyr_4008	0.45	-1.9
4,773,645	+		Psyr_4008	0.45	-0.4
4,773,645	+		Psyr_4008	0.45	+0.5
4,773,646	-		Psyr_4008	0.45	-0.2
4,773,646	-		Psyr_4008	0.45	-1.9
4,773,646	-		Psyr_4008	0.45	-2.3
4,773,646	-		Psyr_4008	0.45	-2.3
4,773,646	-		Psyr_4008	0.45	-1.8
4,773,646	-		Psyr_4008	0.45	-2.6
4,773,646	-		Psyr_4008	0.45	-2.8
4,773,825	+		Psyr_4008	0.50	-2.3
4,773,825	+		Psyr_4008	0.50	-2.0
4,773,826	-		Psyr_4008	0.50	-2.2
4,773,871	-		Psyr_4008	0.52	-2.2
4,773,879	+		Psyr_4008	0.52	-0.4
4,773,879	+		Psyr_4008	0.52	-1.5
4,773,879	+		Psyr_4008	0.52	-3.0
4,773,879	+		Psyr_4008	0.52	-0.8
4,773,880	-		Psyr_4008	0.52	-2.0
4,773,880	-		Psyr_4008	0.52	-2.1
4,773,883	+		Psyr_4008	0.52	+0.4
4,773,883	+		Psyr_4008	0.52	-1.5
4,773,883	+		Psyr_4008	0.52	-0.9
4,773,883	+		Psyr_4008	0.52	-0.3
4,773,883	+		Psyr_4008	0.52	+0.8
4,773,883	+		Psyr_4008	0.52	-0.8
4,773,883	+		Psyr_4008	0.52	-1.0
4,773,884	-		Psyr_4008	0.52	-1.0
4,773,884	-		Psyr_4008	0.52	-1.0
4,773,884	-		Psyr_4008	0.52	-0.5
4,773,884	-		Psyr_4008	0.52	-0.1
4,773,884	-		Psyr_4008	0.52	-1.0
4,773,884	-		Psyr_4008	0.52	-0.7
4,773,884	-		Psyr_4008	0.52	-0.9
4,773,920	+		Psyr_4008	0.53	-0.2
4,773,920	+		Psyr_4008	0.53	+0.5
4,773,960	-		Psyr_4008	0.55	-1.1
4,774,036	-		Psyr_4008	0.57	-3.5
4,774,036	-		Psyr_4008	0.57	+0.3
4,774,036	-		Psyr_4008	0.57	+1.2
4,774,204	-		Psyr_4008	0.62	-1.1
4,774,290	+		Psyr_4008	0.65	-2.2
4,774,290	+		Psyr_4008	0.65	-0.4
4,774,290	+		Psyr_4008	0.65	-1.5
4,774,290	+		Psyr_4008	0.65	-0.5
4,774,291	-		Psyr_4008	0.65	-2.5
4,774,291	-		Psyr_4008	0.65	-1.0
4,774,419	+		Psyr_4008	0.69	+0.5
4,774,463	+		Psyr_4008	0.71	+0.4
4,774,512	+		Psyr_4008	0.72	-0.9
4,774,512	+		Psyr_4008	0.72	-0.9
4,774,512	+		Psyr_4008	0.72	-2.5
4,774,512	+		Psyr_4008	0.72	-1.7
4,774,512	+		Psyr_4008	0.72	-0.3
4,774,513	-		Psyr_4008	0.72	-2.5
4,774,513	-		Psyr_4008	0.72	+0.0
4,774,513	-		Psyr_4008	0.72	-0.8
4,774,513	-		Psyr_4008	0.72	-3.4
4,774,513	-		Psyr_4008	0.72	-2.8
4,774,513	-		Psyr_4008	0.72	-2.6
4,774,513	-		Psyr_4008	0.72	-2.4
4,774,554	+		Psyr_4008	0.74	+0.1
4,774,554	+		Psyr_4008	0.74	-1.0
4,774,554	+		Psyr_4008	0.74	-1.5
4,774,554	+		Psyr_4008	0.74	-3.6
4,774,554	+		Psyr_4008	0.74	-0.5
4,774,554	+		Psyr_4008	0.74	-1.1
4,774,554	+		Psyr_4008	0.74	-1.7
4,774,554	+		Psyr_4008	0.74	-1.3
4,774,554	+		Psyr_4008	0.74	+0.5
4,774,555	-		Psyr_4008	0.74	-2.3
4,774,555	-		Psyr_4008	0.74	-3.0
4,774,555	-		Psyr_4008	0.74	-1.0
4,774,555	-		Psyr_4008	0.74	-2.0
4,774,555	-		Psyr_4008	0.74	-1.0
4,774,555	-		Psyr_4008	0.74	-1.0
4,774,581	-		Psyr_4008	0.74	-2.5
4,774,608	+		Psyr_4008	0.75	-2.8
4,774,608	+		Psyr_4008	0.75	+1.0
4,774,609	-		Psyr_4008	0.75	-1.7
4,774,609	-		Psyr_4008	0.75	-0.8
4,774,609	-		Psyr_4008	0.75	-3.0
4,774,609	-		Psyr_4008	0.75	-0.6
4,774,612	+		Psyr_4008	0.75	-1.0
4,774,612	+		Psyr_4008	0.75	-0.4
4,774,612	+		Psyr_4008	0.75	-2.1
4,774,612	+		Psyr_4008	0.75	-0.7
4,774,612	+		Psyr_4008	0.75	-3.5
4,774,612	+		Psyr_4008	0.75	+0.6
4,774,613	-		Psyr_4008	0.75	-0.5
4,774,613	-		Psyr_4008	0.75	-0.5
4,774,613	-		Psyr_4008	0.75	+0.7
4,774,695	+		Psyr_4008	0.78	-0.3
4,774,696	-		Psyr_4008	0.78	+0.3
4,774,720	+		Psyr_4008	0.79	-0.5
4,774,720	+		Psyr_4008	0.79	-1.0
4,774,720	+				-1.0
4,774,721	-		Psyr_4008	0.79	-0.3
4,774,721	-		Psyr_4008	0.79	+0.4
4,774,721	-		Psyr_4008	0.79	+0.0
4,774,914	+		Psyr_4008	0.85	-0.7
4,774,914	+		Psyr_4008	0.85	-0.5
4,774,914	+		Psyr_4008	0.85	-0.4
4,774,915	-		Psyr_4008	0.85	-2.0
4,774,915	-		Psyr_4008	0.85	-1.4
4,774,915	-		Psyr_4008	0.85	-2.5
4,774,915	-		Psyr_4008	0.85	-0.4
4,774,915	-		Psyr_4008	0.85	-2.0
4,774,915	-		Psyr_4008	0.85	-0.9
4,774,915	-		Psyr_4008	0.85	-0.4
4,775,257	+				+1.2
4,775,257	+				+0.2
4,775,267	+				-0.5
4,775,282	+				-0.5
4,775,283	-				-2.3
4,775,354	+				-1.0
4,775,354	+				-1.5
4,775,354	+				+2.0
4,775,354	+				+0.1
4,775,355	-				+1.0
4,775,355	-				-1.0
4,775,355	-				-0.4
4,775,355	-				-0.5
4,775,355	-				-1.7
4,775,355	-				-2.4
4,775,355	-				-0.5
4,775,355	-				-0.4
4,775,447	+				-0.1
4,775,447	+				-1.4
4,775,498	+				-2.3
4,775,499	-				-2.6
4,775,796	-		Psyr_4009	0.29	+0.8
4,775,852	+		Psyr_4009	0.32	-2.0
4,775,852	+		Psyr_4009	0.32	-1.3
4,775,852	+		Psyr_4009	0.32	-0.7
4,775,852	+		Psyr_4009	0.32	+0.0
4,775,852	+		Psyr_4009	0.32	+0.0
4,775,853	-		Psyr_4009	0.33	-2.7
4,775,853	-		Psyr_4009	0.33	-1.5
4,775,853	-		Psyr_4009	0.33	-2.0
4,775,853	-		Psyr_4009	0.33	-2.4
4,775,918	+		Psyr_4009	0.37	-1.2
4,775,918	+		Psyr_4009	0.37	-0.1
4,775,918	+		Psyr_4009	0.37	+0.0
4,775,918	+		Psyr_4009	0.37	+0.3
4,775,918	+		Psyr_4009	0.37	-1.4
4,775,918	+		Psyr_4009	0.37	+1.4
4,775,919	-		Psyr_4009	0.37	-2.3
4,775,919	-		Psyr_4009	0.37	-0.4
4,775,919	-		Psyr_4009	0.37	-1.4
4,775,919	-		Psyr_4009	0.37	-0.5
4,775,919	-		Psyr_4009	0.37	-1.3
4,775,919	-		Psyr_4009	0.37	-1.2