Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3769

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
4,486,270	-		Psyr_3768	0.54	+1.9
4,486,292	+		Psyr_3768	0.56	+0.7
4,486,292	+		Psyr_3768	0.56	+0.9
4,486,293	-		Psyr_3768	0.56	+0.4
4,486,396	-		Psyr_3768	0.63	+0.7
4,486,540	+		Psyr_3768	0.74	-1.1
4,486,541	-		Psyr_3768	0.74	+1.2
4,486,541	-		Psyr_3768	0.74	-0.2
4,486,644	+		Psyr_3768	0.82	+0.1
4,486,828	+				+0.9
4,486,828	+				-0.4
4,486,829	-				+1.2
4,486,829	-				+1.5
4,486,863	+				-0.6
4,486,863	+				+1.5
4,486,863	+				+1.7
4,486,863	+				+0.9
4,486,863	+				-0.7
4,486,863	+				-1.7
4,486,864	-				-0.1
4,486,864	-				+0.3
4,486,864	-				+0.5
4,486,864	-				+0.3
4,486,933	+				+2.5
4,486,933	+				+0.9
4,486,958	-				-1.9
4,486,996	+				+1.3
4,486,997	-				-0.2
4,486,997	-				-0.3
4,487,147	-				+1.1
4,487,215	-				-3.2
4,487,215	-				+1.7
4,487,229	+				+0.3
4,487,229	+				-0.4
4,487,229	+				-1.9
4,487,230	-				+0.4
4,487,230	-				+1.2
4,487,250	+				+1.3
4,487,347	-				+0.7
4,487,382	+		Psyr_3769	0.10	-1.4
4,487,382	+		Psyr_3769	0.10	+0.9
4,487,383	-		Psyr_3769	0.10	+0.2
4,487,397	+		Psyr_3769	0.11	+0.3
4,487,397	+		Psyr_3769	0.11	-0.3
4,487,443	-		Psyr_3769	0.13	+1.3
4,487,499	+		Psyr_3769	0.16	+1.9
4,487,555	+		Psyr_3769	0.18	-0.3
4,487,556	-		Psyr_3769	0.18	-0.6
4,487,631	+		Psyr_3769	0.22	-0.1
4,487,631	+		Psyr_3769	0.22	+0.4
4,487,631	+		Psyr_3769	0.22	+0.7
4,487,631	+		Psyr_3769	0.22	+0.3
4,487,631	+		Psyr_3769	0.22	-0.2
4,487,631	+		Psyr_3769	0.22	+0.1
4,487,631	+		Psyr_3769	0.22	+1.3
4,487,631	+		Psyr_3769	0.22	-1.7
4,487,631	+		Psyr_3769	0.22	-0.2
4,487,632	-		Psyr_3769	0.22	-1.1
4,487,632	-		Psyr_3769	0.22	-2.0
4,487,632	-		Psyr_3769	0.22	+0.7
4,487,632	-		Psyr_3769	0.22	+1.1
4,487,632	-		Psyr_3769	0.22	+0.2
4,487,632	-		Psyr_3769	0.22	+2.1
4,487,632	-		Psyr_3769	0.22	+0.2
4,487,641	+		Psyr_3769	0.22	-1.6
4,487,642	-		Psyr_3769	0.22	-0.9
4,487,642	-		Psyr_3769	0.22	+0.9
4,487,664	+		Psyr_3769	0.23	-0.0
4,487,724	+		Psyr_3769	0.26	+0.3
4,487,724	+		Psyr_3769	0.26	-1.1
4,487,725	-		Psyr_3769	0.26	+1.9
4,487,725	-		Psyr_3769	0.26	-2.2
4,487,725	-		Psyr_3769	0.26	-0.7
4,487,830	-		Psyr_3769	0.31	+0.7
4,487,830	-		Psyr_3769	0.31	-1.9
4,487,830	-		Psyr_3769	0.31	+0.3
4,487,838	+		Psyr_3769	0.31	-0.4
4,487,865	+		Psyr_3769	0.32	-0.1
4,487,866	-		Psyr_3769	0.33	+0.9
4,487,866	-		Psyr_3769	0.33	+0.7
4,487,866	-		Psyr_3769	0.33	-1.1
4,487,866	-		Psyr_3769	0.33	+0.8
4,487,895	+		Psyr_3769	0.34	+0.1
4,487,895	+		Psyr_3769	0.34	+0.4
4,487,896	-		Psyr_3769	0.34	-1.1
4,487,896	-		Psyr_3769	0.34	+1.6
4,487,896	-		Psyr_3769	0.34	-1.0
4,487,896	-		Psyr_3769	0.34	-0.2
4,487,896	-		Psyr_3769	0.34	-2.2
4,488,053	-		Psyr_3769	0.41	+0.4
4,488,273	+		Psyr_3769	0.51	+0.5
4,488,273	+		Psyr_3769	0.51	-1.1
4,488,273	+		Psyr_3769	0.51	-1.1
4,488,273	+		Psyr_3769	0.51	+1.6
4,488,274	-		Psyr_3769	0.51	-0.2
4,488,274	-		Psyr_3769	0.51	-0.1
4,488,274	-		Psyr_3769	0.51	+1.4
4,488,274	-		Psyr_3769	0.51	-1.1
4,488,274	-		Psyr_3769	0.51	-1.7
4,488,366	+		Psyr_3769	0.55	-0.7
4,488,366	+		Psyr_3769	0.55	+1.1
4,488,367	-		Psyr_3769	0.56	+2.9
4,488,367	-		Psyr_3769	0.56	+1.2
4,488,367	-		Psyr_3769	0.56	-1.2
4,488,367	-		Psyr_3769	0.56	-0.1
4,488,367	-		Psyr_3769	0.56	-2.1
4,488,678	+		Psyr_3769	0.70	-0.6
4,488,679	-		Psyr_3769	0.70	-0.1
4,488,679	-		Psyr_3769	0.70	+1.3
4,488,679	-		Psyr_3769	0.70	+1.8
4,488,679	-		Psyr_3769	0.70	+0.9
4,488,679	-		Psyr_3769	0.70	+0.3
4,488,766	-		Psyr_3769	0.74	-1.9
4,488,831	+		Psyr_3769	0.77	+0.1
4,488,839	+		Psyr_3769	0.77	-0.4
4,488,840	-		Psyr_3769	0.77	+0.3
4,489,008	+		Psyr_3769	0.85	+0.5
4,489,011	+		Psyr_3769	0.85	-1.1
4,489,012	-		Psyr_3769	0.85	+1.2
4,489,012	-		Psyr_3769	0.85	+1.5
4,489,181	-				+1.4
4,489,182	+				+0.3
4,489,402	+				-1.4
4,489,402	+				-1.7
4,489,402	+				+0.8
4,489,402	+				+1.5
4,489,403	-				+0.7
4,489,403	-				+0.1
4,489,403	-				-0.7
4,489,403	-				+3.3
4,489,431	+				+1.5
4,489,431	+				+0.5
4,489,431	+				-0.7
4,489,450	-				+0.1
4,489,478	-				+0.5
4,489,478	-				-0.3
4,489,478	-				+1.8
4,489,526	+				-0.0
4,489,527	-				+1.3
4,489,527	-				+1.7
4,489,527	-				+0.7
4,489,530	+				+0.0
4,489,541	+				+0.1
4,489,542	-				-2.2
4,489,546	-				-1.0
4,489,732	+		Psyr_3770	0.31	+1.2
4,489,732	+		Psyr_3770	0.31	+0.5
4,489,733	-		Psyr_3770	0.31	+0.4
4,489,733	-		Psyr_3770	0.31	+1.7
4,489,849	+		Psyr_3770	0.69	+0.3
4,489,849	+		Psyr_3770	0.69	+0.3
4,489,849	+		Psyr_3770	0.69	+0.8
4,489,850	-		Psyr_3770	0.69	+1.7
4,489,891	+		Psyr_3770	0.83	+1.3
4,489,891	+		Psyr_3770	0.83	-0.2
4,489,891	+		Psyr_3770	0.83	+1.1
4,489,892	-		Psyr_3770	0.83	+0.0
4,489,892	-		Psyr_3770	0.83	-1.4
4,489,922	+				-0.9
4,489,922	+				+0.4
4,489,922	+				+0.5
4,489,923	-				+0.3
4,489,923	-				+0.7
4,489,923	-				+0.3
4,489,999	+				+0.9
4,490,000	-				+0.1
4,490,000	-				-1.2
4,490,000	-				+0.9
4,490,053	+				+0.9
4,490,093	+				-1.1
4,490,093	+				+0.3
4,490,093	+				-0.3
4,490,093	+				-2.9
4,490,094	-				+0.1
4,490,094	-				-0.3
4,490,100	-				-0.8
4,490,128	+				+0.9
4,490,129	-				+0.8
4,490,129	-				+1.2
4,490,129	-				-0.4
4,490,230	+		Psyr_3771	0.16	-0.5
4,490,230	+		Psyr_3771	0.16	+0.4
4,490,230	+		Psyr_3771	0.16	-0.7
4,490,230	+		Psyr_3771	0.16	+0.3
4,490,230	+		Psyr_3771	0.16	-0.1
4,490,231	-		Psyr_3771	0.17	+0.7
4,490,231	-		Psyr_3771	0.17	+0.2
4,490,231	-		Psyr_3771	0.17	-1.2
4,490,231	-		Psyr_3771	0.17	-0.4
4,490,231	-		Psyr_3771	0.17	+0.6
4,490,267	+		Psyr_3771	0.20	+0.3
4,490,267	+		Psyr_3771	0.20	-1.1
4,490,267	+		Psyr_3771	0.20	+1.7
4,490,267	+		Psyr_3771	0.20	+1.7
4,490,267	+		Psyr_3771	0.20	-0.7
4,490,268	-		Psyr_3771	0.20	-1.2
4,490,268	-		Psyr_3771	0.20	-1.4
4,490,268	-		Psyr_3771	0.20	-0.3
4,490,268	-		Psyr_3771	0.20	+1.1
4,490,268	-		Psyr_3771	0.20	+0.1