Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2687

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
3,261,185	+		Psyr_2686	0.12	+1.1
3,261,186	-		Psyr_2686	0.12	+1.2
3,261,186	-		Psyr_2686	0.12	+1.1
3,261,186	-		Psyr_2686	0.12	+0.1
3,261,188	-		Psyr_2686	0.12	-0.5
3,261,233	+		Psyr_2686	0.17	-0.4
3,261,233	+		Psyr_2686	0.17	+1.8
3,261,233	+		Psyr_2686	0.17	+1.4
3,261,234	-		Psyr_2686	0.17	-0.9
3,261,234	-		Psyr_2686	0.17	-0.7
3,261,234	-		Psyr_2686	0.17	-2.4
3,261,234	-		Psyr_2686	0.17	-0.4
3,261,262	+		Psyr_2686	0.20	+0.9
3,261,263	-		Psyr_2686	0.20	+0.6
3,261,293	+		Psyr_2686	0.24	-1.5
3,261,325	+		Psyr_2686	0.27	-0.5
3,261,325	+		Psyr_2686	0.27	-0.0
3,261,326	-		Psyr_2686	0.27	-0.0
3,261,327	+		Psyr_2686	0.27	-1.7
3,261,327	+		Psyr_2686	0.27	-3.2
3,261,328	-		Psyr_2686	0.27	+0.3
3,261,453	-		Psyr_2686	0.41	-0.9
3,261,454	+		Psyr_2686	0.41	+1.1
3,261,454	+		Psyr_2686	0.41	+0.5
3,261,454	+		Psyr_2686	0.41	-0.5
3,261,455	-		Psyr_2686	0.41	-1.3
3,261,455	-		Psyr_2686	0.41	+0.9
3,261,455	-		Psyr_2686	0.41	-1.0
3,261,520	-		Psyr_2686	0.48	-0.3
3,261,520	-		Psyr_2686	0.48	+2.6
3,261,520	-		Psyr_2686	0.48	+0.4
3,261,523	+		Psyr_2686	0.48	-0.6
3,261,524	-		Psyr_2686	0.48	-0.1
3,261,524	-		Psyr_2686	0.48	-0.4
3,261,524	-		Psyr_2686	0.48	-0.3
3,261,552	+		Psyr_2686	0.52	+0.2
3,261,553	-		Psyr_2686	0.52	-1.0
3,261,553	-		Psyr_2686	0.52	+1.8
3,261,553	-		Psyr_2686	0.52	+0.6
3,261,643	+		Psyr_2686	0.61	-2.3
3,261,643	+		Psyr_2686	0.61	-0.9
3,261,643	+		Psyr_2686	0.61	+0.5
3,261,643	+		Psyr_2686	0.61	-1.9
3,261,643	+		Psyr_2686	0.61	+0.7
3,261,643	+		Psyr_2686	0.61	-1.0
3,261,644	-		Psyr_2686	0.61	-1.6
3,261,644	-		Psyr_2686	0.61	+0.4
3,261,644	-		Psyr_2686	0.61	-1.3
3,261,644	-		Psyr_2686	0.61	+0.5
3,261,645	+		Psyr_2686	0.62	+0.7
3,261,767	-		Psyr_2686	0.75	+0.2
3,261,767	-		Psyr_2686	0.75	+2.1
3,261,987	+				-0.5
3,261,995	-				-2.3
3,262,016	+				-1.6
3,262,016	+				+2.3
3,262,016	+				+1.0
3,262,016	+				-0.0
3,262,016	+				+0.1
3,262,016	+				+1.5
3,262,020	+				+0.5
3,262,020	+				+0.6
3,262,021	-				+1.0
3,262,021	-				+3.0
3,262,021	-				+0.7
3,262,021	-				+1.0
3,262,146	+				+0.3
3,262,146	+				+0.1
3,262,146	+				-1.6
3,262,210	+				+0.1
3,262,380	+		Psyr_2687	0.17	+1.0
3,262,381	-		Psyr_2687	0.17	+0.3
3,262,592	+		Psyr_2687	0.32	-0.2
3,262,593	-		Psyr_2687	0.32	+0.9
3,262,660	+		Psyr_2687	0.37	+0.3
3,262,660	+		Psyr_2687	0.37	-0.3
3,262,660	+		Psyr_2687	0.37	-0.7
3,262,661	-		Psyr_2687	0.37	-0.7
3,262,661	-		Psyr_2687	0.37	+0.3
3,262,744	+		Psyr_2687	0.43	-0.5
3,262,744	+		Psyr_2687	0.43	-0.2
3,262,744	+		Psyr_2687	0.43	+0.3
3,262,744	+		Psyr_2687	0.43	+0.2
3,262,744	+		Psyr_2687	0.43	-1.3
3,262,744	+		Psyr_2687	0.43	+0.2
3,262,745	-		Psyr_2687	0.43	+0.2
3,262,745	-		Psyr_2687	0.43	+0.1
3,262,745	-		Psyr_2687	0.43	+0.0
3,262,745	-		Psyr_2687	0.43	+1.0
3,262,774	+		Psyr_2687	0.45	-0.7
3,262,774	+		Psyr_2687	0.45	-0.5
3,262,774	+		Psyr_2687	0.45	+2.3
3,262,774	+		Psyr_2687	0.45	+3.4
3,262,774	+		Psyr_2687	0.45	+0.4
3,262,775	-		Psyr_2687	0.45	+1.8
3,262,775	-		Psyr_2687	0.45	+0.3
3,262,775	-		Psyr_2687	0.45	-0.1
3,262,775	-		Psyr_2687	0.45	+2.1
3,262,775	-		Psyr_2687	0.45	+0.1
3,262,840	-		Psyr_2687	0.50	-0.8
3,262,850	+		Psyr_2687	0.51	-0.0
3,262,872	+		Psyr_2687	0.52	+0.3
3,262,873	-		Psyr_2687	0.52	+0.9
3,262,873	-		Psyr_2687	0.52	+0.1
3,263,055	+		Psyr_2687	0.65	-0.8
3,263,055	+		Psyr_2687	0.65	-0.1
3,263,055	+		Psyr_2687	0.65	+0.3
3,263,055	+		Psyr_2687	0.65	-1.5
3,263,123	+		Psyr_2687	0.70	+0.2
3,263,124	-		Psyr_2687	0.70	-2.4
3,263,139	+		Psyr_2687	0.71	-0.5
3,263,140	-		Psyr_2687	0.71	-2.3
3,263,140	-		Psyr_2687	0.71	+0.9
3,263,373	+		Psyr_2687	0.88	+0.1
3,263,373	+		Psyr_2687	0.88	+1.5
3,263,407	-				-0.1
3,263,407	-				+0.5
3,263,453	+				-0.2
3,263,464	-				+0.5
3,263,464	-				+1.2
3,263,539	+				-0.7
3,263,539	+				-1.2
3,263,540	-				+3.3
3,263,540	-				-1.3
3,263,555	+				-0.3
3,263,555	+				+0.1
3,263,555	+				+1.5
3,263,555	+				+3.0
3,263,555	+				-2.3
3,263,556	-				+0.7
3,263,556	-				+0.4
3,263,556	-				+2.0
3,263,556	-				+0.7
3,263,556	-				-0.2
3,263,556	-				+0.1
3,263,556	-				+0.9
3,263,556	-				+0.9
3,263,594	+				-1.2
3,263,603	+				+0.1
3,263,649	+				+0.5
3,263,681	-				+0.5
3,263,681	-				-0.7
3,263,681	-				+1.2
3,263,681	-				+2.3
3,263,682	+				-0.0
3,263,682	+				+0.2
3,263,682	+				+0.5
3,263,682	+				-0.7
3,263,682	+				-0.0
3,263,682	+				+1.9
3,263,682	+				-2.5
3,263,683	-				+0.1
3,263,683	-				-1.3
3,263,683	-				-0.1
3,263,683	-				+0.8
3,263,683	-				+1.8
3,263,683	-				-0.5
3,263,896	+		Psyr_2688	0.60	+0.8
3,263,896	+		Psyr_2688	0.60	+1.7
3,263,896	+		Psyr_2688	0.60	+0.7
3,263,896	+		Psyr_2688	0.60	-0.8
3,263,896	+		Psyr_2688	0.60	+1.4
3,263,896	+		Psyr_2688	0.60	-1.2
3,263,897	-		Psyr_2688	0.61	+1.0
3,263,897	-		Psyr_2688	0.61	+0.7
3,263,897	-		Psyr_2688	0.61	+0.1
3,263,897	-		Psyr_2688	0.61	+2.0
3,263,897	-		Psyr_2688	0.61	-0.5
3,264,012	+		Psyr_2688	0.89	+0.7
3,264,013	-		Psyr_2688	0.89	-1.5
3,264,013	-		Psyr_2688	0.89	+1.0
3,264,013	-		Psyr_2688	0.89	+0.7
3,264,013	-		Psyr_2688	0.89	-0.0
3,264,090	-				-1.0
3,264,274	+				+0.8
3,264,274	+				-0.7
3,264,274	+				+2.1
3,264,274	+				-0.6
3,264,275	-				+0.5
3,264,275	-				-0.3
3,264,325	+				-0.0
3,264,325	+				-0.7
3,264,326	-				-1.5
3,264,326	-				-0.3
3,264,326	-				+0.1
3,264,326	-				+1.5
3,264,326	-				+0.5
3,264,333	-				-0.1
3,264,333	-				+1.2
3,264,437	+				-2.5
3,264,486	-				+0.2
3,264,486	-				+1.2
3,264,488	-				-0.6
3,264,488	-				-1.6
3,264,489	+				-0.7
3,264,489	+				-1.0
3,264,489	+				-0.5
3,264,489	+				+1.0
3,264,489	+				-1.2
3,264,489	+				-0.3
3,264,490	-				-3.2
3,264,490	-				+0.0
3,264,490	-				+0.9
3,264,490	-				-0.4
3,264,490	-				+0.2
3,264,491	+				+0.4
3,264,491	+				-0.1
3,264,491	+				-0.3
3,264,491	+				+1.1
3,264,492	-				+2.1
3,264,492	-				-0.0
3,264,492	-				+0.9