Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1620

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
1,820,420	+		Psyr_1618	0.51	-0.6
1,820,420	+		Psyr_1618	0.51	+0.8
1,820,420	+		Psyr_1618	0.51	-1.0
1,820,420	+		Psyr_1618	0.51	+1.0
1,820,420	+		Psyr_1618	0.51	-1.1
1,820,420	+		Psyr_1618	0.51	-0.5
1,820,420	+		Psyr_1618	0.51	-0.9
1,820,420	+		Psyr_1618	0.51	+1.2
1,820,420	+		Psyr_1618	0.51	+2.1
1,820,420	+		Psyr_1618	0.51	+1.2
1,820,421	-		Psyr_1618	0.51	+1.1
1,820,421	-		Psyr_1618	0.51	-1.3
1,820,431	-		Psyr_1618	0.52	-0.2
1,820,511	+		Psyr_1618	0.62	+0.3
1,820,511	+		Psyr_1618	0.62	-0.0
1,820,511	+		Psyr_1618	0.62	+1.3
1,820,512	-		Psyr_1618	0.62	-0.1
1,820,512	-		Psyr_1618	0.62	+0.5
1,820,512	-		Psyr_1618	0.62	-0.9
1,820,512	-		Psyr_1618	0.62	-0.7
1,820,699	+		Psyr_1618	0.85	+1.1
1,820,699	+		Psyr_1618	0.85	-1.4
1,820,805	+				-0.4
1,820,859	+		Psyr_1619	0.11	+2.2
1,820,859	+		Psyr_1619	0.11	+1.8
1,820,859	+		Psyr_1619	0.11	+1.0
1,820,859	+		Psyr_1619	0.11	+0.3
1,820,860	-		Psyr_1619	0.11	+0.9
1,820,966	-		Psyr_1619	0.31	-0.0
1,820,966	-		Psyr_1619	0.31	+0.4
1,820,966	-		Psyr_1619	0.31	+0.2
1,820,968	-		Psyr_1619	0.32	-0.1
1,821,074	-		Psyr_1619	0.52	+1.2
1,821,075	+		Psyr_1619	0.52	+0.9
1,821,076	-		Psyr_1619	0.52	-0.7
1,821,076	-		Psyr_1619	0.52	+0.1
1,821,076	-		Psyr_1619	0.52	+0.4
1,821,089	+		Psyr_1619	0.55	-0.4
1,821,129	+		Psyr_1619	0.63	+0.9
1,821,129	+		Psyr_1619	0.63	+1.3
1,821,129	+		Psyr_1619	0.63	+0.7
1,821,129	+		Psyr_1619	0.63	-0.3
1,821,130	-		Psyr_1619	0.63	+0.6
1,821,183	-		Psyr_1619	0.73	+0.2
1,821,216	+		Psyr_1619	0.79	+1.9
1,821,216	+		Psyr_1619	0.79	+1.0
1,821,216	+		Psyr_1619	0.79	+0.2
1,821,217	-		Psyr_1619	0.80	+1.0
1,821,399	+				-0.6
1,821,399	+				+0.1
1,821,399	+				+1.4
1,821,399	+				-1.2
1,821,399	+				+0.9
1,821,399	+				-0.7
1,821,399	+				-0.4
1,821,400	-				+1.7
1,821,400	-				+0.3
1,821,400	-				-0.4
1,821,400	-				+0.1
1,821,400	-				-0.9
1,821,403	+				-0.8
1,821,404	-				+1.9
1,821,404	-				-0.2
1,821,404	-				+0.3
1,821,404	-				+0.2
1,821,439	+		Psyr_1620	0.10	-0.1
1,821,439	+		Psyr_1620	0.10	-0.7
1,821,439	+		Psyr_1620	0.10	+0.9
1,821,439	+		Psyr_1620	0.10	-0.1
1,821,439	+		Psyr_1620	0.10	-0.7
1,821,440	-		Psyr_1620	0.10	-0.7
1,821,440	-		Psyr_1620	0.10	+0.5
1,821,440	-		Psyr_1620	0.10	-0.7
1,821,440	-		Psyr_1620	0.10	+0.2
1,821,453	+		Psyr_1620	0.12	+2.7
1,821,457	+		Psyr_1620	0.12	+0.0
1,821,458	-		Psyr_1620	0.12	+2.3
1,821,478	+		Psyr_1620	0.14	+0.8
1,821,478	+		Psyr_1620	0.14	+0.1
1,821,478	+		Psyr_1620	0.14	-0.1
1,821,479	-		Psyr_1620	0.14	+1.1
1,821,559	+		Psyr_1620	0.20	+1.3
1,821,559	+		Psyr_1620	0.20	+0.0
1,821,559	+		Psyr_1620	0.20	-2.1
1,821,559	+		Psyr_1620	0.20	-0.9
1,821,559	+		Psyr_1620	0.20	+0.7
1,821,559	+		Psyr_1620	0.20	+0.5
1,821,559	+		Psyr_1620	0.20	-0.1
1,821,559	+		Psyr_1620	0.20	-1.4
1,821,560	-		Psyr_1620	0.20	-1.4
1,821,560	-		Psyr_1620	0.20	-0.8
1,821,560	-		Psyr_1620	0.20	+0.8
1,821,560	-		Psyr_1620	0.20	+0.9
1,821,661	+		Psyr_1620	0.29	+0.5
1,821,662	-		Psyr_1620	0.29	+1.8
1,821,724	+		Psyr_1620	0.34	+0.1
1,821,724	+		Psyr_1620	0.34	-0.4
1,821,724	+				-0.7
1,821,724	+		Psyr_1620	0.34	-0.4
1,821,724	+		Psyr_1620	0.34	+0.7
1,821,724	+		Psyr_1620	0.34	-0.8
1,821,725	-		Psyr_1620	0.34	+0.3
1,821,725	-		Psyr_1620	0.34	-0.5
1,821,725	-		Psyr_1620	0.34	-0.0
1,821,725	-		Psyr_1620	0.34	-0.8
1,821,725	-		Psyr_1620	0.34	+1.3
1,821,725	-		Psyr_1620	0.34	-1.1
1,821,801	-		Psyr_1620	0.41	+0.2
1,821,818	-		Psyr_1620	0.42	+0.5
1,821,848	-		Psyr_1620	0.45	+1.5
1,821,922	+		Psyr_1620	0.51	+0.4
1,821,922	+		Psyr_1620	0.51	+0.9
1,821,923	-		Psyr_1620	0.51	+2.2
1,821,923	-		Psyr_1620	0.51	+0.6
1,821,923	-		Psyr_1620	0.51	-0.9
1,822,054	+		Psyr_1620	0.62	+0.3
1,822,054	+		Psyr_1620	0.62	-1.1
1,822,054	+		Psyr_1620	0.62	-1.1
1,822,055	-		Psyr_1620	0.62	+0.9
1,822,055	-		Psyr_1620	0.62	+0.9
1,822,186	+		Psyr_1620	0.73	-1.5
1,822,186	+		Psyr_1620	0.73	+0.1
1,822,187	-		Psyr_1620	0.73	+0.4
1,822,187	-		Psyr_1620	0.73	+1.2
1,822,187	-		Psyr_1620	0.73	-1.9
1,822,187	-		Psyr_1620	0.73	-1.4
1,822,199	+		Psyr_1620	0.74	+0.8
1,822,199	+		Psyr_1620	0.74	+0.1
1,822,200	-		Psyr_1620	0.74	+0.6
1,822,200	-		Psyr_1620	0.74	+0.2
1,822,231	+		Psyr_1620	0.77	+1.2
1,822,232	-		Psyr_1620	0.77	-1.0
1,822,232	-		Psyr_1620	0.77	+1.1
1,822,232	-		Psyr_1620	0.77	-0.7
1,822,313	-		Psyr_1620	0.83	+0.3
1,822,455	-				+1.5
1,822,499	-				+2.5
1,822,499	-				-1.6
1,822,505	+				-0.6
1,822,505	+				-1.3
1,822,505	+				-0.7
1,822,506	-				+0.1
1,822,506	-				+0.2
1,822,611	+				+0.4
1,822,611	+				+0.7
1,822,612	-				-0.4
1,822,612	-				+0.7
1,822,615	+				+0.4
1,822,615	+				-0.7
1,822,616	-				-2.3
1,822,616	-				+0.1
1,822,616	-				-1.7
1,822,663	+				+0.3
1,822,667	+				+0.8
1,822,673	-				-0.0
1,822,691	-				-0.1
1,822,694	+				+0.1
1,822,694	+				-1.5
1,822,694	+				-0.3
1,822,694	+				+0.8
1,822,727	+				+0.8
1,822,728	-				-1.1
1,822,764	+				-0.4
1,822,764	+				+0.8
1,822,800	+		Psyr_1621	0.10	-0.1
1,822,801	-		Psyr_1621	0.10	-1.4
1,822,878	+		Psyr_1621	0.22	-0.7
1,822,878	+		Psyr_1621	0.22	+0.4
1,822,878	+		Psyr_1621	0.22	+0.1
1,822,878	+		Psyr_1621	0.22	-3.1
1,822,879	-		Psyr_1621	0.22	-1.3
1,822,879	-		Psyr_1621	0.22	-1.5
1,822,899	+		Psyr_1621	0.25	-0.2
1,822,899	+		Psyr_1621	0.25	-0.3
1,822,965	+		Psyr_1621	0.34	+2.5
1,822,965	+		Psyr_1621	0.34	-0.0
1,823,255	-		Psyr_1621	0.77	+0.9
1,823,427	+				+0.3
1,823,427	+				+0.8
1,823,427	+				-0.3
1,823,428	-				+0.0
1,823,431	-				-0.3
1,823,441	+				+0.1
1,823,441	+				+0.5
1,823,442	-				+1.2
1,823,442	-				+0.9
1,823,442	-				+0.9
1,823,442	-				+0.3