Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0620 and Psyr_0621 overlap by 1 nucleotides Psyr_0621 and Psyr_0622 are separated by 93 nucleotides Psyr_0622 and Psyr_0623 are separated by 410 nucleotides
Psyr_0620: Psyr_0620 - Outer membrane autotransporter barrel, at 708,816 to 711,095
_0620
Psyr_0621: Psyr_0621 - conserved hypothetical protein, at 711,095 to 711,946
_0621
Psyr_0622: Psyr_0622 - transcriptional regulator, XRE family, at 712,040 to 712,282
_0622
Psyr_0623: Psyr_0623 - Peptidase S24, S26A and S26B, at 712,693 to 713,424
_0623
Position (kb) 712
713 Strain fitness (log2 ratio) -2
-1
0
1 at 711.204 kb on + strand, within Psyr_0621 at 711.204 kb on + strand, within Psyr_0621 at 711.204 kb on + strand, within Psyr_0621 at 711.204 kb on + strand, within Psyr_0621 at 711.205 kb on - strand, within Psyr_0621 at 711.205 kb on - strand, within Psyr_0621 at 711.276 kb on + strand, within Psyr_0621 at 711.276 kb on + strand, within Psyr_0621 at 711.317 kb on + strand, within Psyr_0621 at 711.318 kb on - strand, within Psyr_0621 at 711.382 kb on + strand, within Psyr_0621 at 711.382 kb on + strand, within Psyr_0621 at 711.382 kb on + strand, within Psyr_0621 at 711.382 kb on + strand, within Psyr_0621 at 711.383 kb on - strand, within Psyr_0621 at 711.383 kb on - strand, within Psyr_0621 at 711.383 kb on - strand, within Psyr_0621 at 711.383 kb on - strand, within Psyr_0621 at 711.545 kb on - strand, within Psyr_0621 at 711.545 kb on - strand, within Psyr_0621 at 711.545 kb on - strand, within Psyr_0621 at 711.545 kb on - strand, within Psyr_0621 at 711.558 kb on - strand, within Psyr_0621 at 711.562 kb on + strand, within Psyr_0621 at 711.566 kb on - strand, within Psyr_0621 at 711.693 kb on + strand, within Psyr_0621 at 711.693 kb on + strand, within Psyr_0621 at 711.694 kb on - strand, within Psyr_0621 at 711.694 kb on - strand, within Psyr_0621 at 711.694 kb on - strand, within Psyr_0621 at 711.694 kb on - strand, within Psyr_0621 at 711.738 kb on - strand, within Psyr_0621 at 711.738 kb on - strand, within Psyr_0621 at 711.759 kb on + strand, within Psyr_0621 at 711.760 kb on - strand, within Psyr_0621 at 711.862 kb on + strand at 711.863 kb on - strand at 711.930 kb on + strand at 711.930 kb on + strand at 711.930 kb on + strand at 711.930 kb on + strand at 711.931 kb on - strand at 711.931 kb on - strand at 711.931 kb on - strand at 711.931 kb on - strand at 711.931 kb on - strand at 711.931 kb on - strand at 711.931 kb on - strand at 711.955 kb on + strand at 711.956 kb on - strand at 711.956 kb on - strand at 711.988 kb on - strand at 712.001 kb on + strand at 712.081 kb on - strand, within Psyr_0622 at 712.182 kb on - strand, within Psyr_0622 at 712.193 kb on + strand, within Psyr_0622 at 712.194 kb on - strand, within Psyr_0622 at 712.310 kb on + strand at 712.310 kb on + strand at 712.311 kb on - strand at 712.314 kb on + strand at 712.315 kb on - strand at 712.318 kb on + strand at 712.318 kb on + strand at 712.318 kb on + strand at 712.419 kb on - strand at 712.457 kb on - strand at 712.500 kb on + strand at 712.500 kb on + strand at 712.556 kb on + strand at 712.557 kb on - strand at 712.696 kb on + strand at 712.901 kb on + strand, within Psyr_0623 at 712.901 kb on + strand, within Psyr_0623 at 712.901 kb on + strand, within Psyr_0623 at 712.901 kb on + strand, within Psyr_0623 at 712.901 kb on + strand, within Psyr_0623
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 711,204 + Psyr_0621 0.13 +1.0 711,204 + Psyr_0621 0.13 +1.7 711,204 + Psyr_0621 0.13 -0.5 711,204 + Psyr_0621 0.13 +1.3 711,205 - Psyr_0621 0.13 +0.4 711,205 - Psyr_0621 0.13 +0.0 711,276 + Psyr_0621 0.21 +0.3 711,276 + Psyr_0621 0.21 +0.8 711,317 + Psyr_0621 0.26 +1.3 711,318 - Psyr_0621 0.26 -0.1 711,382 + Psyr_0621 0.34 +0.2 711,382 + Psyr_0621 0.34 +1.1 711,382 + Psyr_0621 0.34 +0.7 711,382 + Psyr_0621 0.34 +0.4 711,383 - Psyr_0621 0.34 -2.2 711,383 - Psyr_0621 0.34 -1.2 711,383 - Psyr_0621 0.34 +0.2 711,383 - Psyr_0621 0.34 -0.4 711,545 - Psyr_0621 0.53 -1.1 711,545 - Psyr_0621 0.53 +0.1 711,545 - Psyr_0621 0.53 +0.1 711,545 - Psyr_0621 0.53 +1.2 711,558 - Psyr_0621 0.54 +0.1 711,562 + Psyr_0621 0.55 -0.6 711,566 - Psyr_0621 0.55 +1.2 711,693 + Psyr_0621 0.70 +1.6 711,693 + Psyr_0621 0.70 +0.2 711,694 - Psyr_0621 0.70 +0.5 711,694 - Psyr_0621 0.70 -0.3 711,694 - Psyr_0621 0.70 +0.1 711,694 - Psyr_0621 0.70 +0.9 711,738 - Psyr_0621 0.75 -0.8 711,738 - Psyr_0621 0.75 +0.6 711,759 + Psyr_0621 0.78 -2.5 711,760 - Psyr_0621 0.78 +0.7 711,862 + +1.1 711,863 - +0.2 711,930 + +0.3 711,930 + -0.9 711,930 + +0.3 711,930 + +0.3 711,931 - -1.4 711,931 - -0.6 711,931 - -0.9 711,931 - +1.5 711,931 - -0.5 711,931 - +0.4 711,931 - +0.3 711,955 + +0.1 711,956 - -1.7 711,956 - +1.0 711,988 - -0.1 712,001 + +0.8 712,081 - Psyr_0622 0.17 +1.6 712,182 - Psyr_0622 0.58 +1.5 712,193 + Psyr_0622 0.63 -0.2 712,194 - Psyr_0622 0.63 +0.9 712,310 + -0.0 712,310 + -2.2 712,311 - +0.3 712,314 + -0.6 712,315 - -0.1 712,318 + +1.2 712,318 + +0.1 712,318 + +0.2 712,419 - +0.6 712,457 - -1.2 712,500 + +0.8 712,500 + +1.5 712,556 + +0.5 712,557 - -0.5 712,696 + -0.3 712,901 + Psyr_0623 0.28 +0.1 712,901 + Psyr_0623 0.28 -0.6 712,901 + Psyr_0623 0.28 -0.7 712,901 + Psyr_0623 0.28 -1.1 712,901 + Psyr_0623 0.28 +0.1
Or see this region's nucleotide sequence