Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02779

Experiment: PYE 4C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 4C survival rep2 28 days
2,935,788	+		CCNA_02776	0.84	+0.7
2,935,803	+		CCNA_02776	0.85	+0.7
2,935,818	-		CCNA_02776	0.86	+2.3
2,935,827	-		CCNA_02776	0.86	+1.0
2,935,851	+		CCNA_02776	0.88	+2.3
2,935,859	-		CCNA_02776	0.88	+1.3
2,935,874	+		CCNA_02776	0.89	-1.5
2,935,876	+		CCNA_02776	0.90	+2.3
2,935,876	+		CCNA_02776	0.90	-1.7
2,935,876	+		CCNA_02776	0.90	+1.3
2,935,908	+				+2.3
2,935,915	-				+0.3
2,935,915	-				-0.7
2,935,915	-				-0.5
2,935,922	+				-0.6
2,935,971	-				-0.4
2,935,998	-				-1.2
2,936,003	+				-1.0
2,936,003	+				-0.0
2,936,003	+				+0.3
2,936,003	+				+0.2
2,936,035	-				-2.0
2,936,045	-				-1.4
2,936,045	-				-2.5
2,936,045	-				-0.4
2,936,045	-				-2.8
2,936,074	+				+1.5
2,936,079	+				+1.3
2,936,084	+				-0.9
2,936,084	+				-1.3
2,936,087	-				+1.9
2,936,092	-				-0.5
2,936,114	+				+1.5
2,936,133	+				+1.1
2,936,136	+				+0.5
2,936,136	+				+0.6
2,936,171	+				+2.3
2,936,171	+				-0.0
2,936,179	-				+0.6
2,936,193	+				+2.3
2,936,200	-				-1.5
2,936,201	-				+1.5
2,936,203	-				+0.8
2,936,206	+				+2.3
2,936,206	+				-0.7
2,936,206	+				-1.0
2,936,206	+				-0.7
2,936,210	-				+0.1
2,936,212	-				-0.5
2,936,246	+		CCNA_02777	0.29	+2.3
2,936,246	+		CCNA_02777	0.29	-1.0
2,936,246	+		CCNA_02777	0.29	+0.7
2,936,246	+		CCNA_02777	0.29	-1.6
2,936,246	+		CCNA_02777	0.29	-1.6
2,936,254	-		CCNA_02777	0.35	+0.9
2,936,254	-		CCNA_02777	0.35	+0.3
2,936,254	-		CCNA_02777	0.35	-0.5
2,936,254	-		CCNA_02777	0.35	+0.6
2,936,254	-		CCNA_02777	0.35	+0.4
2,936,254	-		CCNA_02777	0.35	+1.8
2,936,254	-		CCNA_02777	0.35	+0.2
2,936,267	-		CCNA_02777	0.44	-0.7
2,936,323	-		CCNA_02777	0.86	+0.6
2,936,324	-		CCNA_02777	0.87	+0.3
2,936,336	+				-0.5
2,936,337	-				-1.2
2,936,378	-				+0.8
2,936,439	+		CCNA_02778	0.18	-1.0
2,936,439	+		CCNA_02778	0.18	-0.0
2,936,447	-		CCNA_02778	0.22	-0.9
2,936,447	-		CCNA_02778	0.22	-0.5
2,936,447	-		CCNA_02778	0.22	+2.3
2,936,447	-		CCNA_02778	0.22	-0.8
2,936,490	+		CCNA_02778	0.38	-1.0
2,936,516	-		CCNA_02778	0.49	+1.3
2,936,523	+		CCNA_02778	0.51	-0.5
2,936,557	+		CCNA_02778	0.65	+0.7
2,936,562	+		CCNA_02778	0.67	-0.6
2,936,570	-		CCNA_02778	0.70	+1.3
2,936,577	-		CCNA_02778	0.73	+0.5
2,936,587	-		CCNA_02778	0.76	+0.6
2,936,592	-		CCNA_02778	0.78	+1.6
2,936,608	-		CCNA_02778	0.85	+0.3
2,936,609	-		CCNA_02778	0.85	-0.3
2,936,652	+				+1.1
2,936,658	+				+1.3
2,936,660	-				+0.5
2,936,690	-				+2.3
2,936,745	+				+0.2
2,936,745	+				+1.2
2,936,753	-				-0.9
2,936,798	-				+1.5
2,936,801	+				+2.4
2,936,801	+				+1.2
2,936,802	+				+1.5
2,936,809	-				+1.1
2,936,812	+				+1.2
2,936,820	-				+0.5
2,936,826	+				+2.7
2,936,871	+				+1.2
2,936,898	+				+1.9
2,936,903	+				+1.7
2,936,917	-		CCNA_02779	0.11	+1.3
2,936,943	-		CCNA_02779	0.13	-0.3
2,936,948	-		CCNA_02779	0.13	+1.6
2,936,961	+		CCNA_02779	0.14	+2.1
2,936,974	-		CCNA_02779	0.15	+0.7
2,936,983	+		CCNA_02779	0.16	+2.0
2,936,984	+		CCNA_02779	0.16	+1.4
2,936,984	+		CCNA_02779	0.16	+1.4
2,936,991	-		CCNA_02779	0.16	+0.0
2,936,992	-		CCNA_02779	0.16	-0.9
2,936,992	-		CCNA_02779	0.16	-0.2
2,936,992	-		CCNA_02779	0.16	-0.1
2,937,025	+		CCNA_02779	0.19	+3.0
2,937,041	-		CCNA_02779	0.20	+0.6
2,937,119	-		CCNA_02779	0.25	-2.1
2,937,144	+		CCNA_02779	0.27	+1.8
2,937,147	+		CCNA_02779	0.28	+1.0
2,937,179	+		CCNA_02779	0.30	+1.2
2,937,180	+		CCNA_02779	0.30	+1.1
2,937,188	-		CCNA_02779	0.31	+1.1
2,937,206	+		CCNA_02779	0.32	+1.3
2,937,275	+		CCNA_02779	0.37	+1.8
2,937,275	+		CCNA_02779	0.37	+0.5
2,937,275	+		CCNA_02779	0.37	+0.0
2,937,283	-		CCNA_02779	0.38	+2.1
2,937,290	-		CCNA_02779	0.38	+4.6
2,937,317	-		CCNA_02779	0.40	+0.6
2,937,328	+		CCNA_02779	0.41	+1.7
2,937,353	+		CCNA_02779	0.43	+1.1
2,937,353	+		CCNA_02779	0.43	+2.4
2,937,353	+		CCNA_02779	0.43	-0.1
2,937,363	+		CCNA_02779	0.43	+1.1
2,937,371	-		CCNA_02779	0.44	+1.4
2,937,407	+		CCNA_02779	0.47	+2.0
2,937,429	-		CCNA_02779	0.48	+0.8
2,937,444	+		CCNA_02779	0.49	+1.7
2,937,444	+		CCNA_02779	0.49	+2.1
2,937,499	+		CCNA_02779	0.53	+0.9
2,937,502	+		CCNA_02779	0.54	+1.7
2,937,502	+		CCNA_02779	0.54	+1.5
2,937,507	-		CCNA_02779	0.54	+1.7
2,937,507	-		CCNA_02779	0.54	+1.2
2,937,532	+		CCNA_02779	0.56	+2.7
2,937,532	+		CCNA_02779	0.56	+2.1
2,937,532	+		CCNA_02779	0.56	+2.1
2,937,532	+		CCNA_02779	0.56	+1.3
2,937,540	-		CCNA_02779	0.56	+1.1
2,937,540	-		CCNA_02779	0.56	+1.0
2,937,561	-		CCNA_02779	0.58	+1.4
2,937,566	+		CCNA_02779	0.58	+2.2
2,937,581	+		CCNA_02779	0.59	+3.4
2,937,616	-		CCNA_02779	0.62	-1.4
2,937,618	-		CCNA_02779	0.62	+2.7
2,937,625	+		CCNA_02779	0.63	+2.2
2,937,625	+		CCNA_02779	0.63	+1.0
2,937,625	+		CCNA_02779	0.63	+1.2
2,937,625	+		CCNA_02779	0.63	+2.0
2,937,625	+				-0.3
2,937,625	+		CCNA_02779	0.63	+1.7
2,937,625	+		CCNA_02779	0.63	+2.3
2,937,625	+		CCNA_02779	0.63	-0.0
2,937,625	+		CCNA_02779	0.63	+1.2
2,937,625	+		CCNA_02779	0.63	+1.3
2,937,625	+		CCNA_02779	0.63	+0.6
2,937,628	-		CCNA_02779	0.63	+0.6
2,937,633	-		CCNA_02779	0.63	+1.9
2,937,633	-		CCNA_02779	0.63	+2.4
2,937,633	-		CCNA_02779	0.63	+2.6
2,937,633	-		CCNA_02779	0.63	+1.6
2,937,633	-		CCNA_02779	0.63	+1.8
2,937,633	-		CCNA_02779	0.63	+1.7
2,937,633	-		CCNA_02779	0.63	+1.6
2,937,633	-		CCNA_02779	0.63	+2.7
2,937,635	+		CCNA_02779	0.63	+1.4
2,937,635	+		CCNA_02779	0.63	+2.0
2,937,635	+		CCNA_02779	0.63	+1.3
2,937,670	+		CCNA_02779	0.66	+2.4
2,937,754	+		CCNA_02779	0.72	+0.6
2,937,754	+		CCNA_02779	0.72	+2.0
2,937,784	+		CCNA_02779	0.74	+1.0
2,937,845	+		CCNA_02779	0.79	+0.4
2,937,845	+		CCNA_02779	0.79	+2.8
2,937,845	+		CCNA_02779	0.79	+1.0
2,937,852	+		CCNA_02779	0.79	+1.4
2,937,857	+		CCNA_02779	0.80	+1.7
2,937,894	-		CCNA_02779	0.82	-1.7
2,937,897	-		CCNA_02779	0.82	+1.5
2,937,907	-		CCNA_02779	0.83	+3.0
2,937,935	-		CCNA_02779	0.85	+1.0
2,937,943	-		CCNA_02779	0.86	-0.2
2,937,953	-		CCNA_02779	0.87	+1.3
2,937,988	+		CCNA_02779	0.89	+0.2
2,937,988	+		CCNA_02779	0.89	+2.3
2,938,022	+				+1.3
2,938,076	-				+2.0
2,938,104	+				+0.4
2,938,130	+				+0.2
2,938,138	-				+0.6
2,938,162	+				+0.3
2,938,180	-				+1.1
2,938,189	-				+1.3
2,938,200	+				-0.9
2,938,200	+				+1.2
2,938,217	+				+1.6
2,938,217	+				-0.8
2,938,225	-				-1.9
2,938,225	-				+1.3
2,938,228	+				+1.7
2,938,236	-				+2.7
2,938,236	-				+1.3
2,938,236	-				+2.3
2,938,243	+				-0.6
2,938,243	+				+0.4
2,938,251	-				-1.7
2,938,270	+				+1.1
2,938,305	-				-0.0
2,938,327	+				-1.7
2,938,327	+				+0.4
2,938,356	+				+2.3
2,938,364	-				+2.3
2,938,391	+				+0.2
2,938,465	+				-1.0
2,938,465	+				+1.0
2,938,487	+				+0.4
2,938,487	-				-0.9
2,938,554	-				+1.0
2,938,557	+				+0.1
2,938,562	+				+1.7
2,938,595	-				+0.1
2,938,615	+				+0.6
2,938,621	+				+0.3
2,938,626	+				-1.7
2,938,640	-		CCNA_02780	0.11	-0.6
2,938,713	+		CCNA_02780	0.20	+2.3
2,938,713	+		CCNA_02780	0.20	+1.3
2,938,718	+		CCNA_02780	0.21	-1.8
2,938,721	-		CCNA_02780	0.21	-0.7
2,938,725	+		CCNA_02780	0.22	-0.0
2,938,725	+		CCNA_02780	0.22	+0.7
2,938,725	+		CCNA_02780	0.22	-2.2
2,938,725	+		CCNA_02780	0.22	-2.4
2,938,726	-		CCNA_02780	0.22	-0.4
2,938,733	-		CCNA_02780	0.23	-1.0
2,938,733	-		CCNA_02780	0.23	-2.5
2,938,755	-		CCNA_02780	0.25	+0.6
2,938,765	-		CCNA_02780	0.27	-2.0
2,938,770	+		CCNA_02780	0.27	-2.4
2,938,773	-		CCNA_02780	0.28	+0.7
2,938,773	-		CCNA_02780	0.28	+1.3
2,938,804	-		CCNA_02780	0.32	-0.8
2,938,806	+		CCNA_02780	0.32	-2.2
2,938,817	+		CCNA_02780	0.33	-0.9
2,938,819	+		CCNA_02780	0.34	+2.3
2,938,819	+		CCNA_02780	0.34	+0.2
2,938,827	-		CCNA_02780	0.35	+0.7
2,938,828	-		CCNA_02780	0.35	-0.5
2,938,857	+		CCNA_02780	0.38	+0.3
2,938,866	+		CCNA_02780	0.40	+0.2
2,938,866	+		CCNA_02780	0.40	-0.1
2,938,866	+		CCNA_02780	0.40	-2.0
2,938,874	-		CCNA_02780	0.41	-2.4
2,938,874	-		CCNA_02780	0.41	+2.3
2,938,874	-		CCNA_02780	0.41	+0.3
2,938,874	-		CCNA_02780	0.41	+2.9
2,938,876	+		CCNA_02780	0.41	-1.2
2,938,876	+		CCNA_02780	0.41	-0.0
2,938,881	+		CCNA_02780	0.41	-1.2
2,938,881	+		CCNA_02780	0.41	+0.5
2,938,881	+		CCNA_02780	0.41	-0.9
2,938,881	+		CCNA_02780	0.41	+0.3
2,938,894	+		CCNA_02780	0.43	+2.3
2,938,894	+		CCNA_02780	0.43	-1.3
2,938,894	+		CCNA_02780	0.43	+0.0
2,938,902	-		CCNA_02780	0.44	-0.3
2,938,907	-		CCNA_02780	0.45	-1.0
2,938,931	+		CCNA_02780	0.48	-1.4
2,938,934	-		CCNA_02780	0.48	+0.4
2,938,939	-		CCNA_02780	0.49	+2.3
2,938,954	+		CCNA_02780	0.51	-0.8
2,938,958	+		CCNA_02780	0.51	-0.0
2,938,969	-		CCNA_02780	0.53	+0.3
2,939,017	+		CCNA_02780	0.59	-1.9
2,939,026	+		CCNA_02780	0.60	+1.1
2,939,070	-		CCNA_02780	0.66	-0.7
2,939,088	+		CCNA_02780	0.68	-0.7
2,939,093	+		CCNA_02780	0.68	-0.5
2,939,096	+		CCNA_02780	0.69	-0.0
2,939,121	+		CCNA_02780	0.72	-0.4
2,939,129	+		CCNA_02780	0.73	-1.5
2,939,129	+		CCNA_02780	0.73	+1.6
2,939,129	+		CCNA_02780	0.73	-0.4
2,939,129	-		CCNA_02780	0.73	+0.0