Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01129

Experiment: PYE 4C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 4C survival rep2 28 days
1,232,523	+		CCNA_03890	0.66	+0.2
1,232,541	+		CCNA_03890	0.68	+0.4
1,232,549	-		CCNA_03890	0.68	-2.5
1,232,579	+		CCNA_03890	0.70	-0.6
1,232,593	+		CCNA_03890	0.71	+0.1
1,232,599	+		CCNA_03890	0.72	-0.3
1,232,600	-		CCNA_03890	0.72	-2.0
1,232,614	+		CCNA_03890	0.73	-0.1
1,232,615	+		CCNA_03890	0.73	+0.6
1,232,629	-		CCNA_03890	0.74	-0.5
1,232,706	-		CCNA_03890	0.79	+0.6
1,232,719	+		CCNA_03890	0.80	-2.1
1,232,719	+		CCNA_03890	0.80	-1.8
1,232,734	+		CCNA_03890	0.82	-0.5
1,232,835	+		CCNA_03890	0.89	-0.0
1,232,868	+				-0.1
1,232,874	+				-3.7
1,232,874	+				+0.4
1,232,884	+				-0.8
1,232,884	+				-1.0
1,232,884	+				+0.6
1,232,884	+				-0.9
1,232,884	+				-0.3
1,232,884	+				+1.2
1,232,884	+				+0.0
1,232,884	+				+0.7
1,232,884	+				-0.2
1,232,884	+				-0.2
1,232,892	-				-1.6
1,232,892	-				-2.1
1,232,892	-				-1.1
1,232,892	-				-2.8
1,232,892	-				-0.0
1,232,892	-				-3.0
1,232,892	-				+0.1
1,232,909	+				+0.2
1,232,909	+				+0.1
1,232,953	+				-0.4
1,232,963	+				-2.2
1,232,963	+				+0.7
1,232,971	-				+2.3
1,232,971	-				-0.0
1,232,971	-				-0.7
1,232,971	-				-2.0
1,232,971	-				-1.3
1,232,973	+				-1.3
1,232,973	+				-0.4
1,232,973	+				+0.4
1,232,973	+				+0.7
1,232,973	+				-1.1
1,232,981	-				-0.5
1,232,981	-				-0.7
1,232,981	-				-0.1
1,232,995	+				+0.3
1,232,998	+				-0.5
1,233,010	+				+1.8
1,233,033	+				-1.8
1,233,033	+				-0.3
1,233,038	+				+0.2
1,233,043	+				-0.6
1,233,046	-				+1.3
1,233,046	-				+1.9
1,233,046	-				-0.9
1,233,046	-				-2.7
1,233,051	-				+1.5
1,233,053	-				-0.1
1,233,074	+				+0.7
1,233,099	+		CCNA_01128	0.15	-0.3
1,233,099	+		CCNA_01128	0.15	+0.5
1,233,099	+		CCNA_01128	0.15	+0.5
1,233,099	+		CCNA_01128	0.15	+0.6
1,233,099	+		CCNA_01128	0.15	+2.5
1,233,099	+		CCNA_01128	0.15	+0.9
1,233,100	+		CCNA_01128	0.15	+1.0
1,233,107	-		CCNA_01128	0.17	+0.7
1,233,110	+		CCNA_01128	0.18	+3.4
1,233,118	-		CCNA_01128	0.21	-1.2
1,233,125	+		CCNA_01128	0.23	-0.2
1,233,125	+		CCNA_01128	0.23	-2.2
1,233,125	+		CCNA_01128	0.23	+1.8
1,233,133	-		CCNA_01128	0.26	+0.2
1,233,133	-		CCNA_01128	0.26	+0.5
1,233,133	-		CCNA_01128	0.26	+0.3
1,233,133	-		CCNA_01128	0.26	-1.2
1,233,133	-		CCNA_01128	0.26	-1.1
1,233,139	-		CCNA_01128	0.28	-3.0
1,233,162	+		CCNA_01128	0.36	+1.0
1,233,162	+		CCNA_01128	0.36	-0.7
1,233,170	-		CCNA_01128	0.38	-1.8
1,233,170	-		CCNA_01128	0.38	+1.3
1,233,170	-		CCNA_01128	0.38	-0.7
1,233,180	-		CCNA_01128	0.42	-0.0
1,233,192	+		CCNA_01128	0.46	+0.1
1,233,200	+		CCNA_01128	0.48	+0.6
1,233,226	+		CCNA_01128	0.57	+0.0
1,233,226	+		CCNA_01128	0.57	+0.3
1,233,234	-		CCNA_01128	0.59	-0.7
1,233,246	-		CCNA_01128	0.63	-1.2
1,233,247	+		CCNA_01128	0.64	-1.4
1,233,251	-				-0.1
1,233,257	+		CCNA_01128	0.67	+1.2
1,233,265	-		CCNA_01128	0.70	-1.6
1,233,268	+		CCNA_01128	0.71	-1.1
1,233,272	+		CCNA_01128	0.72	+0.4
1,233,272	+		CCNA_01128	0.72	+0.1
1,233,279	+		CCNA_01128	0.74	+0.8
1,233,280	-		CCNA_01128	0.75	-0.2
1,233,280	-		CCNA_01128	0.75	+3.6
1,233,336	+				+0.5
1,233,355	+				+0.5
1,233,362	+				-0.8
1,233,370	-				+0.2
1,233,372	+				+1.6
1,233,372	+				+1.2
1,233,372	+				+1.1
1,233,380	-				-0.8
1,233,385	-				-2.6
1,233,508	-				-1.3
1,233,550	+		CCNA_01129	0.17	-1.5
1,233,556	+		CCNA_01129	0.19	+2.3
1,233,556	+		CCNA_01129	0.19	-2.8
1,233,556	+		CCNA_01129	0.19	-1.2
1,233,556	+		CCNA_01129	0.19	-2.6
1,233,556	+		CCNA_01129	0.19	+1.3
1,233,558	+		CCNA_01129	0.20	+0.1
1,233,558	+		CCNA_01129	0.20	-1.2
1,233,564	-		CCNA_01129	0.22	-0.5
1,233,612	+		CCNA_01129	0.40	+2.3
1,233,617	+		CCNA_01129	0.42	-0.1
1,233,625	+		CCNA_01129	0.45	+2.3
1,233,653	+		CCNA_01129	0.56	-3.3
1,233,653	+		CCNA_01129	0.56	-1.8
1,233,661	-		CCNA_01129	0.59	+2.3
1,233,781	-				+0.7
1,233,811	+				+0.3
1,233,819	-				-0.3
1,233,824	+				+0.3
1,233,841	+				+0.3
1,233,853	+				-1.0
1,233,853	+				-2.0
1,233,853	+				-2.4
1,233,853	+				+0.5
1,233,861	-		CCNA_01130	0.10	+1.3
1,233,883	+		CCNA_01130	0.13	-3.4
1,233,927	-		CCNA_01130	0.19	+0.7
1,233,933	+		CCNA_01130	0.20	-1.4
1,233,947	+		CCNA_01130	0.21	-0.0
1,233,952	+		CCNA_01130	0.22	-0.5
1,233,963	+		CCNA_01130	0.24	+0.1
1,233,963	+		CCNA_01130	0.24	-1.7
1,233,963	+		CCNA_01130	0.24	-3.8
1,233,963	+		CCNA_01130	0.24	-1.4
1,233,963	+		CCNA_01130	0.24	-2.6
1,233,963	+		CCNA_01130	0.24	-1.8
1,233,963	+		CCNA_01130	0.24	-2.2
1,233,963	+		CCNA_01130	0.24	+1.3
1,233,963	+		CCNA_01130	0.24	+2.3
1,233,963	+		CCNA_01130	0.24	-1.4
1,233,963	+		CCNA_01130	0.24	-2.9
1,233,963	+		CCNA_01130	0.24	-0.6
1,233,963	+		CCNA_01130	0.24	-2.5
1,233,963	+		CCNA_01130	0.24	-2.0
1,233,971	-		CCNA_01130	0.25	+2.3
1,233,971	-		CCNA_01130	0.25	+0.3
1,233,971	-		CCNA_01130	0.25	+0.3
1,233,971	-		CCNA_01130	0.25	-0.3
1,233,976	-		CCNA_01130	0.25	-1.2
1,233,977	+		CCNA_01130	0.25	-0.3
1,234,005	+		CCNA_01130	0.29	-0.7
1,234,013	+		CCNA_01130	0.30	-2.0
1,234,021	-		CCNA_01130	0.31	+1.3
1,234,021	-		CCNA_01130	0.31	-2.2
1,234,051	+		CCNA_01130	0.35	-2.6
1,234,051	+		CCNA_01130	0.35	+2.3
1,234,051	+		CCNA_01130	0.35	-1.8
1,234,107	+		CCNA_01130	0.43	-0.9
1,234,119	+		CCNA_01130	0.44	-3.3
1,234,125	-		CCNA_01130	0.45	+2.3
1,234,130	-		CCNA_01130	0.46	-1.5
1,234,205	-		CCNA_01130	0.56	+0.3
1,234,279	-		CCNA_01130	0.65	-2.3
1,234,279	-		CCNA_01130	0.65	-1.3
1,234,290	+		CCNA_01130	0.67	-2.8
1,234,315	+		CCNA_01130	0.70	+2.3
1,234,317	+		CCNA_01130	0.70	-1.0
1,234,325	-		CCNA_01130	0.71	-0.9
1,234,325	-		CCNA_01130	0.71	+0.7
1,234,325	-		CCNA_01130	0.71	-0.9
1,234,375	-		CCNA_01130	0.78	+1.3
1,234,385	+		CCNA_01130	0.79	-0.9
1,234,385	+		CCNA_01130	0.79	-2.9
1,234,385	+		CCNA_01130	0.79	-2.0
1,234,390	+		CCNA_01130	0.80	-1.6
1,234,393	-		CCNA_01130	0.80	-0.9
1,234,412	+		CCNA_01130	0.83	-0.3
1,234,421	+		CCNA_01130	0.84	-1.5
1,234,463	+		CCNA_01130	0.90	-2.6
1,234,495	+				+0.8
1,234,495	+				+0.8
1,234,495	+				-0.1
1,234,495	+				-0.9
1,234,495	+				+0.4
1,234,495	+				-0.3
1,234,495	+				+0.4
1,234,495	+				+0.3
1,234,495	+				+0.5
1,234,503	-				-0.3
1,234,503	-				-2.3
1,234,503	-				-0.5
1,234,503	-				-3.1
1,234,503	-				-0.0
1,234,503	-				+0.7
1,234,520	+				-1.3
1,234,520	+				+0.3
1,234,520	+				-1.7
1,234,528	-				+0.7
1,234,544	-				-2.2
1,234,581	+				-0.5
1,234,595	+				-3.6
1,234,603	+				+0.7
1,234,603	+				-0.0
1,234,730	+		CCNA_01131	0.17	-1.3
1,234,738	-		CCNA_01131	0.17	-0.9