Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2470

Experiment: Pyruvate-Sulfite (60-20mM) with Chromate 50uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlpxK and b0786 are separated by 166 nucleotidesb0786 and DVU2471 are separated by 494 nucleotides DVU2468: lpxK - tetraacyldisaccharide 4-kinase (TIGR), at 2,575,998 to 2,577,062 lpxK DVU2470: b0786 - membrane protein, putaive (TIGR), at 2,577,229 to 2,577,930 b0786 DVU2471: DVU2471 - oxidoreductase, selenocysteine-containing (TIGR), at 2,578,425 to 2,579,723 DVU2471 Position (kb) 2577 2578Strain fitness (log2 ratio) -2 -1 0 1 2at 2577.113 kb on - strandat 2577.171 kb on - strandat 2577.184 kb on + strandat 2577.193 kb on - strandat 2577.322 kb on - strand, within b0786at 2577.409 kb on - strand, within b0786at 2577.678 kb on - strand, within b0786at 2577.684 kb on - strand, within b0786at 2577.763 kb on + strand, within b0786at 2577.797 kb on - strand, within b0786at 2577.852 kb on - strand, within b0786at 2577.933 kb on - strandat 2577.938 kb on + strandat 2578.010 kb on + strandat 2578.035 kb on + strandat 2578.040 kb on + strandat 2578.043 kb on - strandat 2578.087 kb on + strandat 2578.144 kb on + strandat 2578.144 kb on + strandat 2578.152 kb on - strandat 2578.152 kb on - strandat 2578.186 kb on + strandat 2578.191 kb on + strandat 2578.204 kb on - strandat 2578.521 kb on + strandat 2578.548 kb on - strandat 2578.600 kb on + strand, within DVU2471at 2578.642 kb on + strand, within DVU2471at 2578.717 kb on - strand, within DVU2471at 2578.790 kb on - strand, within DVU2471at 2578.821 kb on + strand, within DVU2471

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Chromate 50uM
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2,577,113 - +0.2
2,577,171 - -0.2
2,577,184 + +1.9
2,577,193 - +0.3
2,577,322 - b0786 DVU2470 0.13 -0.0
2,577,409 - b0786 DVU2470 0.26 -1.2
2,577,678 - b0786 DVU2470 0.64 -0.9
2,577,684 - b0786 DVU2470 0.65 +0.5
2,577,763 + b0786 DVU2470 0.76 -0.6
2,577,797 - b0786 DVU2470 0.81 -0.6
2,577,852 - b0786 DVU2470 0.89 -1.7
2,577,933 - +0.4
2,577,938 + -0.4
2,578,010 + -0.6
2,578,035 + -0.8
2,578,040 + +0.4
2,578,043 - -1.3
2,578,087 + -0.2
2,578,144 + -0.1
2,578,144 + -0.9
2,578,152 - +1.2
2,578,152 - -0.5
2,578,186 + -0.2
2,578,191 + -0.2
2,578,204 - -1.8
2,578,521 + -0.1
2,578,548 - +0.2
2,578,600 + DVU2471 0.13 +0.2
2,578,642 + DVU2471 0.17 +1.2
2,578,717 - DVU2471 0.22 +0.0
2,578,790 - DVU2471 0.28 -0.4
2,578,821 + DVU2471 0.30 -0.4

Or see this region's nucleotide sequence