Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0836 and Synpcc7942_0837 overlap by 4 nucleotides Synpcc7942_0837 and Synpcc7942_0838 are separated by 48 nucleotides Synpcc7942_0838 and merR overlap by 8 nucleotides
Synpcc7942_0836: Synpcc7942_0836 - hypothetical protein, at 831,166 to 832,182
_0836
Synpcc7942_0837: Synpcc7942_0837 - hypothetical protein, at 832,179 to 832,811
_0837
Synpcc7942_0838: Synpcc7942_0838 - Elongator protein 3/MiaB/NifB, at 832,860 to 833,957
_0838
Synpcc7942_0839: merR - Nitrilase, at 833,950 to 834,954
merR
Position (kb) 832
833
834 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 831.860 kb on + strand, within Synpcc7942_0836 at 831.860 kb on + strand, within Synpcc7942_0836 at 831.860 kb on + strand, within Synpcc7942_0836 at 831.860 kb on + strand, within Synpcc7942_0836 at 831.860 kb on + strand, within Synpcc7942_0836 at 831.860 kb on + strand, within Synpcc7942_0836 at 831.860 kb on + strand, within Synpcc7942_0836 at 831.862 kb on + strand, within Synpcc7942_0836 at 831.868 kb on - strand, within Synpcc7942_0836 at 831.868 kb on - strand, within Synpcc7942_0836 at 831.923 kb on - strand, within Synpcc7942_0836 at 831.926 kb on - strand, within Synpcc7942_0836 at 831.951 kb on - strand, within Synpcc7942_0836 at 831.964 kb on + strand, within Synpcc7942_0836 at 831.975 kb on - strand, within Synpcc7942_0836 at 831.982 kb on + strand, within Synpcc7942_0836 at 832.017 kb on + strand, within Synpcc7942_0836 at 832.017 kb on - strand, within Synpcc7942_0836 at 832.030 kb on + strand, within Synpcc7942_0836 at 832.030 kb on + strand, within Synpcc7942_0836 at 832.030 kb on + strand, within Synpcc7942_0836 at 832.030 kb on + strand, within Synpcc7942_0836 at 832.031 kb on + strand, within Synpcc7942_0836 at 832.038 kb on - strand, within Synpcc7942_0836 at 832.038 kb on - strand, within Synpcc7942_0836 at 832.038 kb on - strand, within Synpcc7942_0836 at 832.080 kb on - strand, within Synpcc7942_0836 at 832.132 kb on + strand at 832.134 kb on - strand at 832.156 kb on + strand at 832.194 kb on - strand at 832.199 kb on + strand at 832.237 kb on + strand at 832.389 kb on - strand, within Synpcc7942_0837 at 832.394 kb on - strand, within Synpcc7942_0837 at 832.439 kb on + strand, within Synpcc7942_0837 at 832.455 kb on + strand, within Synpcc7942_0837 at 832.493 kb on - strand, within Synpcc7942_0837 at 832.514 kb on - strand, within Synpcc7942_0837 at 832.559 kb on - strand, within Synpcc7942_0837 at 832.583 kb on + strand, within Synpcc7942_0837 at 832.616 kb on + strand, within Synpcc7942_0837 at 832.616 kb on + strand at 832.719 kb on - strand, within Synpcc7942_0837 at 832.734 kb on - strand, within Synpcc7942_0837 at 832.734 kb on - strand, within Synpcc7942_0837 at 832.783 kb on - strand at 832.789 kb on - strand at 832.789 kb on - strand at 832.789 kb on - strand at 832.789 kb on - strand at 832.794 kb on - strand at 832.794 kb on - strand at 832.847 kb on + strand at 832.867 kb on + strand at 832.877 kb on + strand at 832.922 kb on - strand at 832.952 kb on - strand at 832.953 kb on + strand at 832.961 kb on - strand at 832.961 kb on - strand at 832.984 kb on - strand, within Synpcc7942_0838 at 833.051 kb on + strand, within Synpcc7942_0838 at 833.097 kb on - strand, within Synpcc7942_0838 at 833.114 kb on - strand, within Synpcc7942_0838 at 833.160 kb on - strand, within Synpcc7942_0838 at 833.166 kb on - strand, within Synpcc7942_0838 at 833.166 kb on - strand, within Synpcc7942_0838 at 833.166 kb on - strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.176 kb on - strand, within Synpcc7942_0838 at 833.176 kb on - strand, within Synpcc7942_0838 at 833.176 kb on - strand, within Synpcc7942_0838 at 833.179 kb on + strand, within Synpcc7942_0838 at 833.184 kb on - strand, within Synpcc7942_0838 at 833.197 kb on - strand, within Synpcc7942_0838 at 833.242 kb on - strand, within Synpcc7942_0838 at 833.269 kb on + strand, within Synpcc7942_0838 at 833.279 kb on - strand, within Synpcc7942_0838 at 833.284 kb on - strand, within Synpcc7942_0838 at 833.292 kb on - strand, within Synpcc7942_0838 at 833.299 kb on + strand, within Synpcc7942_0838 at 833.304 kb on + strand, within Synpcc7942_0838 at 833.307 kb on - strand, within Synpcc7942_0838 at 833.307 kb on - strand, within Synpcc7942_0838 at 833.308 kb on + strand, within Synpcc7942_0838 at 833.320 kb on + strand, within Synpcc7942_0838 at 833.326 kb on + strand, within Synpcc7942_0838 at 833.328 kb on - strand, within Synpcc7942_0838 at 833.328 kb on - strand, within Synpcc7942_0838 at 833.338 kb on - strand, within Synpcc7942_0838 at 833.346 kb on + strand, within Synpcc7942_0838 at 833.359 kb on - strand, within Synpcc7942_0838 at 833.364 kb on - strand, within Synpcc7942_0838 at 833.382 kb on + strand, within Synpcc7942_0838 at 833.407 kb on + strand, within Synpcc7942_0838 at 833.417 kb on + strand, within Synpcc7942_0838 at 833.425 kb on + strand, within Synpcc7942_0838 at 833.433 kb on - strand, within Synpcc7942_0838 at 833.446 kb on - strand, within Synpcc7942_0838 at 833.474 kb on + strand, within Synpcc7942_0838 at 833.486 kb on + strand, within Synpcc7942_0838 at 833.492 kb on - strand, within Synpcc7942_0838 at 833.494 kb on - strand, within Synpcc7942_0838 at 833.494 kb on - strand, within Synpcc7942_0838 at 833.494 kb on - strand, within Synpcc7942_0838 at 833.509 kb on + strand, within Synpcc7942_0838 at 833.537 kb on - strand, within Synpcc7942_0838 at 833.544 kb on + strand, within Synpcc7942_0838 at 833.544 kb on + strand, within Synpcc7942_0838 at 833.544 kb on + strand, within Synpcc7942_0838 at 833.586 kb on + strand, within Synpcc7942_0838 at 833.594 kb on + strand, within Synpcc7942_0838 at 833.601 kb on + strand, within Synpcc7942_0838 at 833.613 kb on - strand, within Synpcc7942_0838 at 833.614 kb on + strand, within Synpcc7942_0838 at 833.637 kb on - strand, within Synpcc7942_0838 at 833.651 kb on + strand, within Synpcc7942_0838 at 833.659 kb on + strand, within Synpcc7942_0838 at 833.712 kb on - strand, within Synpcc7942_0838 at 833.739 kb on - strand, within Synpcc7942_0838 at 833.762 kb on + strand, within Synpcc7942_0838 at 833.809 kb on + strand, within Synpcc7942_0838 at 833.817 kb on - strand, within Synpcc7942_0838 at 833.846 kb on + strand, within Synpcc7942_0838 at 833.856 kb on + strand at 833.927 kb on + strand at 833.927 kb on + strand at 833.929 kb on + strand at 833.929 kb on + strand at 833.929 kb on + strand at 833.929 kb on + strand at 833.933 kb on - strand at 833.935 kb on - strand at 833.935 kb on - strand at 833.935 kb on - strand at 833.953 kb on + strand at 833.960 kb on + strand at 833.961 kb on - strand at 833.961 kb on - strand at 833.968 kb on - strand at 833.975 kb on + strand at 833.975 kb on + strand at 833.975 kb on + strand at 833.975 kb on + strand at 833.983 kb on - strand at 833.983 kb on - strand at 833.983 kb on - strand at 833.993 kb on - strand at 833.998 kb on - strand at 834.029 kb on - strand at 834.054 kb on - strand, within merR at 834.066 kb on + strand, within merR at 834.071 kb on + strand, within merR at 834.074 kb on - strand, within merR at 834.084 kb on - strand, within merR at 834.084 kb on - strand, within merR at 834.107 kb on - strand, within merR at 834.132 kb on - strand, within merR at 834.189 kb on - strand, within merR at 834.202 kb on - strand, within merR at 834.204 kb on + strand, within merR at 834.204 kb on + strand, within merR at 834.212 kb on - strand, within merR at 834.212 kb on - strand, within merR at 834.217 kb on - strand, within merR at 834.222 kb on - strand, within merR at 834.226 kb on + strand, within merR at 834.246 kb on - strand, within merR at 834.253 kb on - strand, within merR at 834.291 kb on + strand, within merR at 834.315 kb on + strand, within merR at 834.318 kb on - strand, within merR at 834.351 kb on + strand, within merR at 834.375 kb on + strand, within merR at 834.448 kb on + strand, within merR at 834.448 kb on + strand, within merR at 834.448 kb on + strand, within merR at 834.448 kb on + strand, within merR at 834.455 kb on + strand, within merR at 834.456 kb on - strand, within merR at 834.456 kb on - strand, within merR at 834.456 kb on - strand, within merR at 834.463 kb on - strand, within merR at 834.463 kb on - strand, within merR at 834.476 kb on + strand, within merR at 834.481 kb on + strand, within merR at 834.482 kb on + strand, within merR at 834.488 kb on + strand, within merR at 834.489 kb on - strand, within merR at 834.490 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.513 kb on + strand, within merR at 834.514 kb on + strand, within merR at 834.514 kb on + strand, within merR at 834.514 kb on + strand, within merR at 834.514 kb on + strand, within merR at 834.522 kb on - strand, within merR at 834.522 kb on - strand, within merR at 834.522 kb on - strand, within merR at 834.522 kb on - strand, within merR at 834.522 kb on - strand at 834.527 kb on + strand, within merR at 834.537 kb on - strand, within merR at 834.546 kb on - strand, within merR at 834.547 kb on - strand, within merR at 834.616 kb on - strand, within merR at 834.651 kb on + strand, within merR at 834.651 kb on - strand, within merR at 834.659 kb on - strand, within merR at 834.711 kb on + strand, within merR at 834.746 kb on + strand, within merR at 834.754 kb on - strand, within merR at 834.800 kb on + strand, within merR at 834.904 kb on + strand at 834.912 kb on - strand at 834.912 kb on - strand at 834.927 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 831,860 + Synpcc7942_0836 0.68 -0.5 831,860 + Synpcc7942_0836 0.68 -1.6 831,860 + Synpcc7942_0836 0.68 +0.9 831,860 + Synpcc7942_0836 0.68 +1.0 831,860 + Synpcc7942_0836 0.68 -0.1 831,860 + Synpcc7942_0836 0.68 -0.9 831,860 + Synpcc7942_0836 0.68 -2.5 831,862 + Synpcc7942_0836 0.68 -1.5 831,868 - Synpcc7942_0836 0.69 -0.4 831,868 - Synpcc7942_0836 0.69 +2.2 831,923 - Synpcc7942_0836 0.74 +1.2 831,926 - Synpcc7942_0836 0.75 -2.3 831,951 - Synpcc7942_0836 0.77 -0.3 831,964 + Synpcc7942_0836 0.78 +3.8 831,975 - Synpcc7942_0836 0.80 -1.4 831,982 + Synpcc7942_0836 0.80 -1.4 832,017 + Synpcc7942_0836 0.84 -1.0 832,017 - Synpcc7942_0836 0.84 -1.3 832,030 + Synpcc7942_0836 0.85 -0.3 832,030 + Synpcc7942_0836 0.85 -0.8 832,030 + Synpcc7942_0836 0.85 +2.4 832,030 + Synpcc7942_0836 0.85 +1.4 832,031 + Synpcc7942_0836 0.85 +0.8 832,038 - Synpcc7942_0836 0.86 -1.7 832,038 - Synpcc7942_0836 0.86 -0.1 832,038 - Synpcc7942_0836 0.86 -1.8 832,080 - Synpcc7942_0836 0.90 -0.5 832,132 + -1.2 832,134 - -1.4 832,156 + -1.1 832,194 - -0.8 832,199 + -3.8 832,237 + -1.3 832,389 - Synpcc7942_0837 0.33 -2.3 832,394 - Synpcc7942_0837 0.34 -1.0 832,439 + Synpcc7942_0837 0.41 +0.1 832,455 + Synpcc7942_0837 0.44 +2.3 832,493 - Synpcc7942_0837 0.50 -0.8 832,514 - Synpcc7942_0837 0.53 +1.2 832,559 - Synpcc7942_0837 0.60 -1.0 832,583 + Synpcc7942_0837 0.64 -1.4 832,616 + Synpcc7942_0837 0.69 +2.5 832,616 + +2.4 832,719 - Synpcc7942_0837 0.85 +0.9 832,734 - Synpcc7942_0837 0.88 -1.3 832,734 - Synpcc7942_0837 0.88 +0.8 832,783 - -1.3 832,789 - -1.6 832,789 - -1.0 832,789 - +2.0 832,789 - -1.8 832,794 - -0.5 832,794 - -0.2 832,847 + -2.8 832,867 + -3.5 832,877 + +0.5 832,922 - +0.5 832,952 - -1.0 832,953 + -0.1 832,961 - -2.3 832,961 - +2.4 832,984 - Synpcc7942_0838 0.11 +1.2 833,051 + Synpcc7942_0838 0.17 -1.1 833,097 - Synpcc7942_0838 0.22 +5.1 833,114 - Synpcc7942_0838 0.23 -1.6 833,160 - Synpcc7942_0838 0.27 -1.1 833,166 - Synpcc7942_0838 0.28 -1.2 833,166 - Synpcc7942_0838 0.28 +2.4 833,166 - Synpcc7942_0838 0.28 +1.1 833,168 + Synpcc7942_0838 0.28 -1.6 833,168 + Synpcc7942_0838 0.28 -1.4 833,168 + Synpcc7942_0838 0.28 -1.3 833,168 + Synpcc7942_0838 0.28 -0.7 833,168 + Synpcc7942_0838 0.28 -0.9 833,168 + Synpcc7942_0838 0.28 +1.8 833,176 - Synpcc7942_0838 0.29 +2.1 833,176 - Synpcc7942_0838 0.29 +1.7 833,176 - Synpcc7942_0838 0.29 +1.7 833,179 + Synpcc7942_0838 0.29 +1.5 833,184 - Synpcc7942_0838 0.30 +1.4 833,197 - Synpcc7942_0838 0.31 +0.7 833,242 - Synpcc7942_0838 0.35 +0.1 833,269 + Synpcc7942_0838 0.37 -0.6 833,279 - Synpcc7942_0838 0.38 -2.6 833,284 - Synpcc7942_0838 0.39 +2.6 833,292 - Synpcc7942_0838 0.39 +0.4 833,299 + Synpcc7942_0838 0.40 +2.0 833,304 + Synpcc7942_0838 0.40 -1.0 833,307 - Synpcc7942_0838 0.41 +1.6 833,307 - Synpcc7942_0838 0.41 +0.6 833,308 + Synpcc7942_0838 0.41 +0.1 833,320 + Synpcc7942_0838 0.42 -0.9 833,326 + Synpcc7942_0838 0.42 -0.8 833,328 - Synpcc7942_0838 0.43 +1.0 833,328 - Synpcc7942_0838 0.43 +1.6 833,338 - Synpcc7942_0838 0.44 +0.7 833,346 + Synpcc7942_0838 0.44 +0.8 833,359 - Synpcc7942_0838 0.45 +1.4 833,364 - Synpcc7942_0838 0.46 -1.5 833,382 + Synpcc7942_0838 0.48 -0.0 833,407 + Synpcc7942_0838 0.50 +1.4 833,417 + Synpcc7942_0838 0.51 +2.2 833,425 + Synpcc7942_0838 0.51 -2.3 833,433 - Synpcc7942_0838 0.52 -0.1 833,446 - Synpcc7942_0838 0.53 -2.0 833,474 + Synpcc7942_0838 0.56 +1.5 833,486 + Synpcc7942_0838 0.57 -1.6 833,492 - Synpcc7942_0838 0.58 +1.0 833,494 - Synpcc7942_0838 0.58 -0.0 833,494 - Synpcc7942_0838 0.58 +0.5 833,494 - Synpcc7942_0838 0.58 -0.0 833,509 + Synpcc7942_0838 0.59 +2.3 833,537 - Synpcc7942_0838 0.62 -0.4 833,544 + Synpcc7942_0838 0.62 -1.2 833,544 + Synpcc7942_0838 0.62 -1.1 833,544 + Synpcc7942_0838 0.62 -0.2 833,586 + Synpcc7942_0838 0.66 +1.9 833,594 + Synpcc7942_0838 0.67 -0.0 833,601 + Synpcc7942_0838 0.67 -1.0 833,613 - Synpcc7942_0838 0.69 +0.8 833,614 + Synpcc7942_0838 0.69 -0.6 833,637 - Synpcc7942_0838 0.71 -0.4 833,651 + Synpcc7942_0838 0.72 -0.8 833,659 + Synpcc7942_0838 0.73 -2.0 833,712 - Synpcc7942_0838 0.78 +0.4 833,739 - Synpcc7942_0838 0.80 -1.7 833,762 + Synpcc7942_0838 0.82 -0.9 833,809 + Synpcc7942_0838 0.86 -1.5 833,817 - Synpcc7942_0838 0.87 -2.6 833,846 + Synpcc7942_0838 0.90 -1.5 833,856 + +0.6 833,927 + -0.4 833,927 + -0.2 833,929 + +1.9 833,929 + -0.9 833,929 + -0.4 833,929 + +1.4 833,933 - +0.6 833,935 - -0.1 833,935 - -1.5 833,935 - -1.0 833,953 + -0.9 833,960 + -1.1 833,961 - +0.2 833,961 - -0.6 833,968 - +1.1 833,975 + -1.5 833,975 + -0.6 833,975 + +1.9 833,975 + -1.1 833,983 - -0.1 833,983 - -0.7 833,983 - -1.6 833,993 - +1.8 833,998 - -0.0 834,029 - +1.6 834,054 - merR Synpcc7942_0839 0.10 -0.5 834,066 + merR Synpcc7942_0839 0.12 +0.5 834,071 + merR Synpcc7942_0839 0.12 +0.1 834,074 - merR Synpcc7942_0839 0.12 -2.0 834,084 - merR Synpcc7942_0839 0.13 -0.7 834,084 - merR Synpcc7942_0839 0.13 +1.2 834,107 - merR Synpcc7942_0839 0.16 +2.2 834,132 - merR Synpcc7942_0839 0.18 +3.1 834,189 - merR Synpcc7942_0839 0.24 -1.7 834,202 - merR Synpcc7942_0839 0.25 -1.5 834,204 + merR Synpcc7942_0839 0.25 -0.6 834,204 + merR Synpcc7942_0839 0.25 -1.9 834,212 - merR Synpcc7942_0839 0.26 +1.1 834,212 - merR Synpcc7942_0839 0.26 -0.9 834,217 - merR Synpcc7942_0839 0.27 -1.3 834,222 - merR Synpcc7942_0839 0.27 +2.1 834,226 + merR Synpcc7942_0839 0.27 +1.1 834,246 - merR Synpcc7942_0839 0.29 -0.6 834,253 - merR Synpcc7942_0839 0.30 -1.6 834,291 + merR Synpcc7942_0839 0.34 +1.3 834,315 + merR Synpcc7942_0839 0.36 +0.0 834,318 - merR Synpcc7942_0839 0.37 -0.7 834,351 + merR Synpcc7942_0839 0.40 -0.4 834,375 + merR Synpcc7942_0839 0.42 -1.7 834,448 + merR Synpcc7942_0839 0.50 +2.0 834,448 + merR Synpcc7942_0839 0.50 +0.0 834,448 + merR Synpcc7942_0839 0.50 -1.0 834,448 + merR Synpcc7942_0839 0.50 -0.0 834,455 + merR Synpcc7942_0839 0.50 -2.2 834,456 - merR Synpcc7942_0839 0.50 +2.3 834,456 - merR Synpcc7942_0839 0.50 +4.7 834,456 - merR Synpcc7942_0839 0.50 +3.0 834,463 - merR Synpcc7942_0839 0.51 +3.5 834,463 - merR Synpcc7942_0839 0.51 +0.4 834,476 + merR Synpcc7942_0839 0.52 -2.4 834,481 + merR Synpcc7942_0839 0.53 +2.2 834,482 + merR Synpcc7942_0839 0.53 +1.8 834,488 + merR Synpcc7942_0839 0.54 -1.5 834,489 - merR Synpcc7942_0839 0.54 +0.1 834,490 - merR Synpcc7942_0839 0.54 +1.0 834,496 - merR Synpcc7942_0839 0.54 -1.0 834,496 - merR Synpcc7942_0839 0.54 +3.5 834,496 - merR Synpcc7942_0839 0.54 +1.0 834,496 - merR Synpcc7942_0839 0.54 -2.2 834,496 - merR Synpcc7942_0839 0.54 +0.0 834,496 - merR Synpcc7942_0839 0.54 -1.2 834,513 + merR Synpcc7942_0839 0.56 -0.7 834,514 + merR Synpcc7942_0839 0.56 +2.0 834,514 + merR Synpcc7942_0839 0.56 -0.5 834,514 + merR Synpcc7942_0839 0.56 +0.2 834,514 + merR Synpcc7942_0839 0.56 -1.2 834,522 - merR Synpcc7942_0839 0.57 +0.5 834,522 - merR Synpcc7942_0839 0.57 -0.5 834,522 - merR Synpcc7942_0839 0.57 -1.7 834,522 - merR Synpcc7942_0839 0.57 -1.8 834,522 - +2.5 834,527 + merR Synpcc7942_0839 0.57 +1.5 834,537 - merR Synpcc7942_0839 0.58 +2.0 834,546 - merR Synpcc7942_0839 0.59 -0.8 834,547 - merR Synpcc7942_0839 0.59 -3.9 834,616 - merR Synpcc7942_0839 0.66 +1.1 834,651 + merR Synpcc7942_0839 0.70 +1.5 834,651 - merR Synpcc7942_0839 0.70 +1.3 834,659 - merR Synpcc7942_0839 0.71 -1.4 834,711 + merR Synpcc7942_0839 0.76 +1.3 834,746 + merR Synpcc7942_0839 0.79 -0.5 834,754 - merR Synpcc7942_0839 0.80 +0.8 834,800 + merR Synpcc7942_0839 0.85 +0.1 834,904 + -0.1 834,912 - -1.2 834,912 - +3.0 834,927 - -1.2
Or see this region's nucleotide sequence