Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt valS and purT are separated by 81 nucleotides purT and Synpcc7942_0589 are separated by 70 nucleotides Synpcc7942_0589 and Synpcc7942_0590 are separated by 46 nucleotides
Synpcc7942_0587: valS - valyl-tRNA synthetase, at 573,854 to 576,583
valS
Synpcc7942_0588: purT - phosphoribosylglycinamide formyltransferase 2, at 576,665 to 577,840
purT
Synpcc7942_0589: Synpcc7942_0589 - Fe-S-cluster oxidoreductase-like, at 577,911 to 578,573
_0589
Synpcc7942_0590: Synpcc7942_0590 - membrane protein-like, at 578,620 to 578,967
_0590
Position (kb) 576
577
578 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 576.578 kb on + strand at 576.578 kb on + strand at 576.585 kb on - strand at 576.604 kb on + strand at 576.622 kb on - strand at 576.622 kb on - strand at 576.624 kb on - strand at 576.637 kb on - strand at 576.686 kb on - strand at 576.713 kb on - strand at 576.737 kb on - strand at 576.754 kb on - strand at 576.804 kb on + strand, within purT at 576.833 kb on - strand, within purT at 576.855 kb on + strand, within purT at 576.863 kb on - strand, within purT at 576.948 kb on - strand, within purT at 577.071 kb on - strand, within purT at 577.086 kb on - strand, within purT at 577.136 kb on - strand, within purT at 577.235 kb on - strand, within purT at 577.299 kb on + strand, within purT at 577.316 kb on + strand, within purT at 577.316 kb on + strand, within purT at 577.324 kb on - strand, within purT at 577.326 kb on + strand, within purT at 577.384 kb on - strand, within purT at 577.496 kb on - strand, within purT at 577.599 kb on + strand, within purT at 577.624 kb on - strand, within purT at 577.688 kb on + strand, within purT at 577.789 kb on + strand at 577.789 kb on + strand at 577.797 kb on - strand at 577.797 kb on - strand at 577.797 kb on - strand at 577.862 kb on - strand at 577.881 kb on + strand at 577.934 kb on + strand at 577.936 kb on + strand at 577.938 kb on + strand at 577.939 kb on + strand at 577.939 kb on + strand at 577.944 kb on + strand at 577.944 kb on + strand at 577.947 kb on - strand at 577.951 kb on + strand at 578.063 kb on - strand, within Synpcc7942_0589 at 578.090 kb on - strand, within Synpcc7942_0589 at 578.165 kb on + strand, within Synpcc7942_0589 at 578.173 kb on - strand, within Synpcc7942_0589 at 578.173 kb on - strand, within Synpcc7942_0589 at 578.181 kb on + strand, within Synpcc7942_0589 at 578.181 kb on + strand, within Synpcc7942_0589 at 578.204 kb on - strand, within Synpcc7942_0589 at 578.555 kb on + strand at 578.555 kb on + strand at 578.555 kb on + strand at 578.575 kb on + strand at 578.575 kb on + strand at 578.575 kb on - strand at 578.666 kb on - strand, within Synpcc7942_0590 at 578.679 kb on + strand, within Synpcc7942_0590 at 578.679 kb on + strand, within Synpcc7942_0590 at 578.693 kb on - strand, within Synpcc7942_0590 at 578.759 kb on - strand, within Synpcc7942_0590 at 578.759 kb on - strand, within Synpcc7942_0590 at 578.763 kb on + strand, within Synpcc7942_0590 at 578.787 kb on + strand, within Synpcc7942_0590 at 578.787 kb on + strand, within Synpcc7942_0590 at 578.795 kb on - strand, within Synpcc7942_0590 at 578.797 kb on + strand, within Synpcc7942_0590 at 578.818 kb on + strand, within Synpcc7942_0590 at 578.818 kb on + strand, within Synpcc7942_0590 at 578.826 kb on - strand, within Synpcc7942_0590 at 578.826 kb on - strand, within Synpcc7942_0590
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 576,578 + +1.7 576,578 + -1.7 576,585 - -0.1 576,604 + -1.2 576,622 - +1.7 576,622 - -1.0 576,624 - -1.7 576,637 - -0.9 576,686 - -0.3 576,713 - +1.6 576,737 - +0.7 576,754 - +0.9 576,804 + purT Synpcc7942_0588 0.12 -1.7 576,833 - purT Synpcc7942_0588 0.14 -2.2 576,855 + purT Synpcc7942_0588 0.16 -1.9 576,863 - purT Synpcc7942_0588 0.17 +1.1 576,948 - purT Synpcc7942_0588 0.24 -2.0 577,071 - purT Synpcc7942_0588 0.35 -1.0 577,086 - purT Synpcc7942_0588 0.36 -1.1 577,136 - purT Synpcc7942_0588 0.40 -1.7 577,235 - purT Synpcc7942_0588 0.48 -0.5 577,299 + purT Synpcc7942_0588 0.54 -1.0 577,316 + purT Synpcc7942_0588 0.55 -0.2 577,316 + purT Synpcc7942_0588 0.55 -0.3 577,324 - purT Synpcc7942_0588 0.56 +0.2 577,326 + purT Synpcc7942_0588 0.56 +1.4 577,384 - purT Synpcc7942_0588 0.61 +0.4 577,496 - purT Synpcc7942_0588 0.71 -2.9 577,599 + purT Synpcc7942_0588 0.79 -0.2 577,624 - purT Synpcc7942_0588 0.82 -1.5 577,688 + purT Synpcc7942_0588 0.87 -0.7 577,789 + -2.2 577,789 + -0.3 577,797 - -2.7 577,797 - -0.5 577,797 - -0.5 577,862 - +1.4 577,881 + +1.4 577,934 + +1.4 577,936 + +1.9 577,938 + -2.5 577,939 + -0.9 577,939 + -1.8 577,944 + +1.4 577,944 + -2.7 577,947 - -1.6 577,951 + -2.8 578,063 - Synpcc7942_0589 0.23 +0.2 578,090 - Synpcc7942_0589 0.27 -2.5 578,165 + Synpcc7942_0589 0.38 +1.0 578,173 - Synpcc7942_0589 0.40 +2.0 578,173 - Synpcc7942_0589 0.40 +1.8 578,181 + Synpcc7942_0589 0.41 -1.4 578,181 + Synpcc7942_0589 0.41 -0.8 578,204 - Synpcc7942_0589 0.44 +1.3 578,555 + +0.2 578,555 + +1.5 578,555 + -1.2 578,575 + +0.1 578,575 + -2.1 578,575 - -1.3 578,666 - Synpcc7942_0590 0.13 -1.3 578,679 + Synpcc7942_0590 0.17 +2.2 578,679 + Synpcc7942_0590 0.17 -1.6 578,693 - Synpcc7942_0590 0.21 -3.1 578,759 - Synpcc7942_0590 0.40 +0.7 578,759 - Synpcc7942_0590 0.40 -0.5 578,763 + Synpcc7942_0590 0.41 -1.1 578,787 + Synpcc7942_0590 0.48 +0.6 578,787 + Synpcc7942_0590 0.48 +2.0 578,795 - Synpcc7942_0590 0.50 +1.4 578,797 + Synpcc7942_0590 0.51 -0.5 578,818 + Synpcc7942_0590 0.57 -1.8 578,818 + Synpcc7942_0590 0.57 -2.6 578,826 - Synpcc7942_0590 0.59 -0.4 578,826 - Synpcc7942_0590 0.59 -0.5
Or see this region's nucleotide sequence