Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5109

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
6,059,230	+		Psyr_5107	0.15	-0.2
6,059,230	+		Psyr_5107	0.15	-0.7
6,059,230	+		Psyr_5107	0.15	+3.8
6,059,231	-		Psyr_5107	0.15	+1.0
6,059,355	+		Psyr_5107	0.32	-1.1
6,059,355	+		Psyr_5107	0.32	+0.1
6,059,355	+		Psyr_5107	0.32	+0.6
6,059,438	+		Psyr_5107	0.43	-0.9
6,059,438	+		Psyr_5107	0.43	-0.8
6,059,438	+		Psyr_5107	0.43	-0.7
6,059,438	+		Psyr_5107	0.43	-0.1
6,059,438	+		Psyr_5107	0.43	+1.0
6,059,438	+		Psyr_5107	0.43	+0.1
6,059,438	+		Psyr_5107	0.43	+0.3
6,059,439	-		Psyr_5107	0.43	-0.7
6,059,439	-		Psyr_5107	0.43	+1.7
6,059,439	-		Psyr_5107	0.43	+0.5
6,059,439	-		Psyr_5107	0.43	-1.3
6,059,439	-		Psyr_5107	0.43	-2.4
6,059,439	-		Psyr_5107	0.43	+0.2
6,059,439	-		Psyr_5107	0.43	-1.2
6,059,439	-		Psyr_5107	0.43	+0.2
6,059,482	+		Psyr_5107	0.49	+0.1
6,059,657	+		Psyr_5107	0.72	-0.3
6,059,658	-		Psyr_5107	0.73	-0.0
6,059,658	-		Psyr_5107	0.73	+0.2
6,059,658	-		Psyr_5107	0.73	+1.4
6,059,658	-		Psyr_5107	0.73	-1.0
6,059,658	-		Psyr_5107	0.73	+0.2
6,059,693	+		Psyr_5107	0.77	-0.1
6,059,694	-		Psyr_5107	0.77	+1.0
6,059,754	+		Psyr_5107	0.85	-0.2
6,059,754	+		Psyr_5107	0.85	+0.6
6,059,945	+		Psyr_5108	0.31	-0.8
6,059,945	+		Psyr_5108	0.31	-0.3
6,059,945	+		Psyr_5108	0.31	+0.7
6,059,946	-		Psyr_5108	0.31	-1.5
6,059,946	-		Psyr_5108	0.31	-0.0
6,059,991	-		Psyr_5108	0.47	-0.3
6,060,027	-		Psyr_5108	0.59	+0.6
6,060,027	-		Psyr_5108	0.59	-0.3
6,060,086	+		Psyr_5108	0.80	+1.5
6,060,086	+		Psyr_5108	0.80	+0.7
6,060,086	+		Psyr_5108	0.80	-2.0
6,060,086	+		Psyr_5108	0.80	-0.2
6,060,086	+		Psyr_5108	0.80	+0.5
6,060,086	+		Psyr_5108	0.80	+0.7
6,060,086	+		Psyr_5108	0.80	-0.1
6,060,086	+		Psyr_5108	0.80	-1.3
6,060,086	+		Psyr_5108	0.80	-0.3
6,060,087	-		Psyr_5108	0.80	+0.7
6,060,087	-		Psyr_5108	0.80	-0.7
6,060,087	-		Psyr_5108	0.80	-1.3
6,060,087	-		Psyr_5108	0.80	-1.1
6,060,087	-		Psyr_5108	0.80	-2.9
6,060,087	-		Psyr_5108	0.80	-1.6
6,060,087	-		Psyr_5108	0.80	+0.4
6,060,087	-		Psyr_5108	0.80	-0.1
6,060,095	-		Psyr_5108	0.83	+0.0
6,060,095	-		Psyr_5108	0.83	+2.2
6,060,182	+				+1.0
6,060,203	+				-0.3
6,060,203	+				+1.7
6,060,204	-				+1.1
6,060,328	+		Psyr_5109	0.12	-0.2
6,060,329	-		Psyr_5109	0.12	-0.9
6,060,329	-		Psyr_5109	0.12	-0.5
6,060,406	+		Psyr_5109	0.17	-1.6
6,060,520	+		Psyr_5109	0.25	+0.8
6,060,520	+		Psyr_5109	0.25	+1.0
6,060,521	-		Psyr_5109	0.25	-0.7
6,060,521	-		Psyr_5109	0.25	-2.5
6,060,521	-		Psyr_5109	0.25	-0.6
6,060,529	+		Psyr_5109	0.25	+1.0
6,060,529	+		Psyr_5109	0.25	-0.7
6,060,529	+		Psyr_5109	0.25	+0.6
6,060,529	+		Psyr_5109	0.25	+0.4
6,060,529	+		Psyr_5109	0.25	-0.6
6,060,529	+		Psyr_5109	0.25	-3.2
6,060,530	-		Psyr_5109	0.26	-0.4
6,060,530	-		Psyr_5109	0.26	-0.9
6,060,592	+		Psyr_5109	0.30	-0.4
6,060,592	+		Psyr_5109	0.30	-1.3
6,060,592	+		Psyr_5109	0.30	+1.7
6,060,593	-		Psyr_5109	0.30	+0.4
6,060,593	-		Psyr_5109	0.30	+0.2
6,060,640	+		Psyr_5109	0.33	+0.1
6,060,640	+		Psyr_5109	0.33	+0.3
6,060,640	+		Psyr_5109	0.33	+0.5
6,060,640	+		Psyr_5109	0.33	-0.9
6,060,640	+		Psyr_5109	0.33	-2.0
6,060,641	-		Psyr_5109	0.33	+0.2
6,060,641	-		Psyr_5109	0.33	-0.2
6,060,641	-		Psyr_5109	0.33	-1.6
6,060,673	-		Psyr_5109	0.35	-2.3
6,060,724	+		Psyr_5109	0.38	+0.9
6,060,725	-		Psyr_5109	0.38	-1.2
6,060,725	-		Psyr_5109	0.38	+1.1
6,060,803	+		Psyr_5109	0.43	-0.0
6,060,803	+		Psyr_5109	0.43	-1.3
6,060,840	+		Psyr_5109	0.46	+0.2
6,060,840	+		Psyr_5109	0.46	-1.2
6,060,841	-		Psyr_5109	0.46	+0.7
6,060,841	-		Psyr_5109	0.46	-1.0
6,060,841	-		Psyr_5109	0.46	-1.0
6,060,841	-		Psyr_5109	0.46	+0.5
6,060,841	-		Psyr_5109	0.46	+0.4
6,060,881	-		Psyr_5109	0.48	-1.0
6,060,881	-		Psyr_5109	0.48	+1.7
6,060,893	+		Psyr_5109	0.49	+0.2
6,060,893	+		Psyr_5109	0.49	-1.0
6,060,893	+		Psyr_5109	0.49	-0.4
6,060,894	-		Psyr_5109	0.49	-1.3
6,060,894	-		Psyr_5109	0.49	-0.8
6,060,955	+		Psyr_5109	0.53	-1.7
6,061,067	+		Psyr_5109	0.61	-0.0
6,061,132	+		Psyr_5109	0.65	-0.7
6,061,132	+		Psyr_5109	0.65	-2.0
6,061,132	+		Psyr_5109	0.65	-1.4
6,061,132	+		Psyr_5109	0.65	-0.1
6,061,132	+		Psyr_5109	0.65	-0.5
6,061,132	+		Psyr_5109	0.65	+0.9
6,061,132	+		Psyr_5109	0.65	+0.3
6,061,132	+		Psyr_5109	0.65	-0.9
6,061,133	-		Psyr_5109	0.65	-1.6
6,061,133	-		Psyr_5109	0.65	-0.1
6,061,133	-		Psyr_5109	0.65	-0.6
6,061,296	+		Psyr_5109	0.76	-2.3
6,061,296	+		Psyr_5109	0.76	-0.0
6,061,296	+		Psyr_5109	0.76	-1.0
6,061,297	-		Psyr_5109	0.76	+1.1
6,061,297	-		Psyr_5109	0.76	-0.3
6,061,297	-		Psyr_5109	0.76	+1.3
6,061,297	-		Psyr_5109	0.76	-2.2
6,061,297	-		Psyr_5109	0.76	-0.2
6,061,297	-		Psyr_5109	0.76	+1.7
6,061,297	-		Psyr_5109	0.76	+1.0
6,061,298	+		Psyr_5109	0.76	+2.1
6,061,298	+		Psyr_5109	0.76	+1.5
6,061,298	+		Psyr_5109	0.76	-1.5
6,061,298	+		Psyr_5109	0.76	+1.0
6,061,298	+		Psyr_5109	0.76	-0.4
6,061,299	-		Psyr_5109	0.76	+0.5
6,061,299	-		Psyr_5109	0.76	-2.5
6,061,299	-		Psyr_5109	0.76	+0.2
6,061,299	-		Psyr_5109	0.76	+1.3
6,061,299	-		Psyr_5109	0.76	+0.6
6,061,342	+		Psyr_5109	0.79	+0.6
6,061,343	-		Psyr_5109	0.79	+0.1
6,061,343	-		Psyr_5109	0.79	+1.0
6,061,343	-		Psyr_5109	0.79	-0.9
6,061,399	+		Psyr_5109	0.82	+0.6
6,061,612	-				-0.3
6,061,771	+				-1.5
6,061,771	+				-0.6
6,061,771	+				-0.3
6,061,772	-				-0.1
6,061,772	-				-0.2
6,061,866	+		Psyr_5110	0.16	+0.5
6,061,867	-		Psyr_5110	0.16	+0.8
6,061,872	+		Psyr_5110	0.17	-3.1
6,061,916	+		Psyr_5110	0.21	+0.7
6,061,916	+		Psyr_5110	0.21	+0.2
6,061,916	+		Psyr_5110	0.21	-0.8
6,061,916	+		Psyr_5110	0.21	+0.6
6,061,917	-		Psyr_5110	0.21	+1.4
6,061,980	-		Psyr_5110	0.28	+0.5
6,061,995	+		Psyr_5110	0.29	+0.8
6,061,996	-		Psyr_5110	0.29	+0.5
6,061,996	-		Psyr_5110	0.29	-0.9
6,061,996	-		Psyr_5110	0.29	+2.1
6,062,077	+		Psyr_5110	0.37	+0.5
6,062,077	+		Psyr_5110	0.37	+0.4
6,062,077	+		Psyr_5110	0.37	+0.5
6,062,077	+		Psyr_5110	0.37	-0.3
6,062,077	+		Psyr_5110	0.37	+1.9
6,062,078	-		Psyr_5110	0.38	+0.6
6,062,078	-		Psyr_5110	0.38	+1.1
6,062,078	-		Psyr_5110	0.38	+1.0
6,062,078	-		Psyr_5110	0.38	-0.3
6,062,078	-		Psyr_5110	0.38	+0.7
6,062,078	-		Psyr_5110	0.38	+0.6
6,062,078	-		Psyr_5110	0.38	+0.3
6,062,078	-		Psyr_5110	0.38	-1.3
6,062,127	+		Psyr_5110	0.43	+1.1
6,062,128	-		Psyr_5110	0.43	-0.9
6,062,128	-		Psyr_5110	0.43	-0.3
6,062,242	+		Psyr_5110	0.54	+0.7
6,062,243	-		Psyr_5110	0.54	-2.4
6,062,258	+		Psyr_5110	0.56	+1.3
6,062,258	+		Psyr_5110	0.56	+2.3
6,062,264	+		Psyr_5110	0.56	-0.6
6,062,264	+		Psyr_5110	0.56	-0.5
6,062,289	+		Psyr_5110	0.59	-0.1
6,062,289	+		Psyr_5110	0.59	-1.2
6,062,289	+		Psyr_5110	0.59	+0.5
6,062,289	+		Psyr_5110	0.59	+1.0
6,062,289	+		Psyr_5110	0.59	-0.6
6,062,289	+		Psyr_5110	0.59	-0.3
6,062,289	+		Psyr_5110	0.59	-1.6
6,062,290	-		Psyr_5110	0.59	+0.4
6,062,290	-		Psyr_5110	0.59	-1.1
6,062,290	-		Psyr_5110	0.59	-0.7
6,062,290	-		Psyr_5110	0.59	+0.9
6,062,290	-		Psyr_5110	0.59	+0.6
6,062,460	+		Psyr_5110	0.76	-0.7
6,062,463	+		Psyr_5110	0.77	+0.2
6,062,463	+		Psyr_5110	0.77	-0.8
6,062,463	+		Psyr_5110	0.77	+0.1
6,062,463	+		Psyr_5110	0.77	+0.4
6,062,464	-		Psyr_5110	0.77	+0.6
6,062,464	-		Psyr_5110	0.77	-1.5
6,062,464	-		Psyr_5110	0.77	-0.0
6,062,485	+		Psyr_5110	0.79	-0.5
6,062,485	+		Psyr_5110	0.79	+0.3
6,062,486	-		Psyr_5110	0.79	+0.6
6,062,486	-		Psyr_5110	0.79	-0.4
6,062,486	-		Psyr_5110	0.79	+1.2
6,062,486	-		Psyr_5110	0.79	+1.0
6,062,567	+		Psyr_5110	0.87	+0.4
6,062,637	+				-0.0
6,062,637	+				-0.1
6,062,637	+				+0.9
6,062,637	+				-1.3
6,062,637	+				+0.5
6,062,637	+				-0.4
6,062,638	-				+1.4
6,062,638	-				+0.0
6,062,638	-				-1.1
6,062,638	-				+1.8
6,062,638	-				-0.6
6,062,664	+				-0.4
6,062,664	+				+1.1
6,062,665	-				-0.6