Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4946

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
5,860,026	+				+0.4
5,860,080	+				+1.0
5,860,103	+				+0.7
5,860,104	-				+2.9
5,860,178	+				-0.1
5,860,206	+				+0.9
5,860,206	+				+1.2
5,860,207	-				+0.4
5,860,207	-				-0.3
5,860,212	+				-0.1
5,860,212	+				-0.5
5,860,212	+				+0.6
5,860,213	-				+0.3
5,860,213	-				-2.0
5,860,281	+		Psyr_4945	0.17	-1.9
5,860,281	+		Psyr_4945	0.17	-1.2
5,860,281	+		Psyr_4945	0.17	-1.2
5,860,282	-		Psyr_4945	0.17	+1.3
5,860,282	-		Psyr_4945	0.17	-1.5
5,860,282	-		Psyr_4945	0.17	-1.0
5,860,290	-		Psyr_4945	0.18	+1.0
5,860,389	+		Psyr_4945	0.30	+0.9
5,860,390	-		Psyr_4945	0.30	+0.3
5,860,390	-		Psyr_4945	0.30	-1.2
5,860,825	+		Psyr_4945	0.82	+0.5
5,860,825	+		Psyr_4945	0.82	-1.3
5,860,826	-		Psyr_4945	0.82	+0.7
5,860,826	-		Psyr_4945	0.82	-2.3
5,860,901	+				+0.5
5,860,901	+				-1.0
5,860,912	+				+2.0
5,860,912	+				+0.3
5,860,912	+				+0.9
5,860,912	+				-0.6
5,860,912	+				-1.3
5,860,913	-				-1.1
5,860,913	-				+1.1
5,860,913	-				-0.3
5,860,913	-				+0.3
5,860,913	-				+0.2
5,860,913	-				-2.3
5,860,948	-				-0.5
5,860,948	-				+0.3
5,860,948	-				-2.1
5,860,949	+				+0.0
5,860,950	-				+0.9
5,860,950	-				+1.5
5,861,015	+				-1.9
5,861,016	-				+1.6
5,861,024	+				-1.1
5,861,025	-				+0.7
5,861,345	+		Psyr_4946	0.16	-1.0
5,861,345	+		Psyr_4946	0.16	-1.2
5,861,345	+		Psyr_4946	0.16	-0.0
5,861,345	+		Psyr_4946	0.16	+0.4
5,861,345	+		Psyr_4946	0.16	+1.3
5,861,345	+		Psyr_4946	0.16	-2.2
5,861,346	-		Psyr_4946	0.16	-2.0
5,861,346	-		Psyr_4946	0.16	-1.0
5,861,346	-		Psyr_4946	0.16	+0.0
5,861,346	-		Psyr_4946	0.16	+0.5
5,861,346	-		Psyr_4946	0.16	+0.3
5,861,450	+		Psyr_4946	0.20	+0.5
5,861,450	+		Psyr_4946	0.20	-1.7
5,861,450	+		Psyr_4946	0.20	+1.1
5,861,450	+		Psyr_4946	0.20	-0.0
5,861,451	-		Psyr_4946	0.20	-0.7
5,861,451	-		Psyr_4946	0.20	-0.1
5,861,451	-		Psyr_4946	0.20	-1.2
5,861,451	-		Psyr_4946	0.20	-1.1
5,861,451	-		Psyr_4946	0.20	+0.6
5,861,451	-		Psyr_4946	0.20	+0.3
5,861,451	-		Psyr_4946	0.20	-0.9
5,861,451	-		Psyr_4946	0.20	-0.0
5,861,451	-		Psyr_4946	0.20	+0.2
5,861,483	+		Psyr_4946	0.22	-1.7
5,861,483	+		Psyr_4946	0.22	+0.7
5,861,484	-		Psyr_4946	0.22	+0.2
5,861,489	+		Psyr_4946	0.22	-0.1
5,861,490	-		Psyr_4946	0.22	-2.3
5,861,490	-		Psyr_4946	0.22	-0.1
5,861,490	-		Psyr_4946	0.22	-0.8
5,861,968	-		Psyr_4946	0.43	-0.3
5,861,976	-		Psyr_4946	0.43	-0.8
5,862,065	+		Psyr_4946	0.47	+1.3
5,862,065	+		Psyr_4946	0.47	-0.8
5,862,065	+		Psyr_4946	0.47	-0.1
5,862,065	+		Psyr_4946	0.47	-0.3
5,862,065	+		Psyr_4946	0.47	-0.3
5,862,065	+		Psyr_4946	0.47	+0.2
5,862,066	-		Psyr_4946	0.47	+0.9
5,862,066	-		Psyr_4946	0.47	-0.5
5,862,066	-		Psyr_4946	0.47	+1.2
5,862,221	-		Psyr_4946	0.53	-0.3
5,862,221	-		Psyr_4946	0.53	+2.9
5,862,221	-		Psyr_4946	0.53	-1.7
5,862,221	-		Psyr_4946	0.53	+2.7
5,862,462	+		Psyr_4946	0.64	+0.2
5,862,731	+		Psyr_4946	0.75	-0.5
5,862,732	-		Psyr_4946	0.75	-2.8
5,862,732	-		Psyr_4946	0.75	-0.3
5,862,816	-		Psyr_4946	0.79	-0.2
5,862,974	+		Psyr_4946	0.86	-0.8
5,862,974	+		Psyr_4946	0.86	-1.0
5,862,974	+		Psyr_4946	0.86	+1.3
5,862,974	+		Psyr_4946	0.86	-1.4
5,862,974	+		Psyr_4946	0.86	-0.8
5,862,974	+		Psyr_4946	0.86	+2.0
5,862,974	+		Psyr_4946	0.86	-1.0
5,862,974	+		Psyr_4946	0.86	+1.5
5,862,975	-		Psyr_4946	0.86	+0.7
5,862,975	-		Psyr_4946	0.86	-0.4
5,862,990	-		Psyr_4946	0.86	-0.4
5,862,990	-		Psyr_4946	0.86	-1.0
5,862,990	-				+0.3
5,863,188	-				+0.3
5,863,370	-				+0.1
5,863,395	-				-0.7
5,863,465	+				+1.3
5,863,465	+				+0.5
5,863,465	+				+0.8
5,863,465	+				-0.7
5,863,465	+				+0.3
5,863,466	-				-0.9
5,863,466	-				-0.3
5,863,466	-				+1.1
5,863,516	+				+0.0
5,863,516	+				-2.5
5,863,516	+				+0.8
5,863,516	+				-0.4
5,863,516	+				+0.5
5,863,516	+				-0.3
5,863,516	+				-0.2
5,863,517	-				+0.3
5,863,517	-				-0.4
5,863,525	+				+0.7
5,863,525	+				-0.4
5,863,525	+				+2.1
5,863,526	-				-0.4
5,863,526	-				+0.3
5,863,526	-				-0.3
5,863,526	-				-1.0
5,863,535	+				-0.3
5,863,536	-				+0.7
5,863,598	+		Psyr_4947	0.18	+1.2
5,863,729	-		Psyr_4947	0.48	+0.2
5,863,827	-		Psyr_4947	0.70	-0.4
5,863,858	+		Psyr_4947	0.77	-2.5
5,863,858	+		Psyr_4947	0.77	+0.9
5,863,858	+		Psyr_4947	0.77	-0.5
5,863,858	+		Psyr_4947	0.77	-0.2
5,863,858	+		Psyr_4947	0.77	+0.2
5,863,858	+		Psyr_4947	0.77	-0.3
5,863,858	+		Psyr_4947	0.77	+0.2
5,863,858	+		Psyr_4947	0.77	+0.0
5,863,858	+		Psyr_4947	0.77	-1.7
5,863,858	+		Psyr_4947	0.77	-0.0
5,863,858	+		Psyr_4947	0.77	+0.9
5,863,859	-		Psyr_4947	0.77	+0.2
5,863,859	-		Psyr_4947	0.77	-0.4
5,863,859	-		Psyr_4947	0.77	+1.3
5,863,859	-		Psyr_4947	0.77	+0.7
5,863,859	-		Psyr_4947	0.77	-0.1
5,863,859	-		Psyr_4947	0.77	+0.9
5,863,859	-		Psyr_4947	0.77	-1.0
5,863,859	-		Psyr_4947	0.77	+0.1
5,863,859	-		Psyr_4947	0.77	+0.5
5,863,859	-		Psyr_4947	0.77	+1.7
5,863,859	-		Psyr_4947	0.77	-1.3
5,863,960	+				-0.3
5,863,984	-				+0.4
5,863,984	-				+1.3
5,863,984	-				+0.7
5,864,084	+				-0.1
5,864,085	-				-2.0
5,864,085	-				-1.9
5,864,091	-				-1.4
5,864,217	-				+0.1
5,864,259	+				-0.5
5,864,259	+				+0.9
5,864,259	+				+0.8
5,864,259	+				+1.9
5,864,259	+				+0.5
5,864,260	-				+0.9
5,864,260	-				-0.1
5,864,260	-				-0.7