Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4609

Experiment: apoplastic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4608 and Psyr_4609 are separated by 239 nucleotidesPsyr_4609 and Psyr_4610 are separated by 70 nucleotidesPsyr_4610 and Psyr_4611 overlap by 4 nucleotides Psyr_4608: Psyr_4608 - Integrase, catalytic region, at 5,465,472 to 5,466,254 _4608 Psyr_4609: Psyr_4609 - anthranilate synthase, component I, at 5,466,494 to 5,467,975 _4609 Psyr_4610: Psyr_4610 - phosphoglycolate phosphatase, at 5,468,046 to 5,468,864 _4610 Psyr_4611: Psyr_4611 - ribulose-5-phosphate 3-epimerase, at 5,468,861 to 5,469,535 _4611 Position (kb) 5466 5467 5468Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5466.259 kb on + strandat 5466.259 kb on + strandat 5466.259 kb on + strandat 5466.259 kb on + strandat 5466.259 kb on + strandat 5466.259 kb on + strandat 5466.259 kb on + strandat 5466.259 kb on + strandat 5466.259 kb on + strandat 5466.259 kb on + strandat 5466.261 kb on + strandat 5466.261 kb on + strandat 5466.261 kb on + strandat 5466.261 kb on + strandat 5466.261 kb on + strandat 5466.434 kb on + strandat 5466.444 kb on + strandat 5466.444 kb on + strandat 5466.444 kb on + strandat 5466.614 kb on + strandat 5466.614 kb on + strandat 5466.614 kb on + strandat 5466.614 kb on + strandat 5466.615 kb on - strandat 5466.615 kb on - strandat 5466.615 kb on - strandat 5466.615 kb on - strandat 5466.615 kb on - strandat 5467.149 kb on + strand, within Psyr_4609at 5467.149 kb on + strand, within Psyr_4609at 5467.149 kb on + strand, within Psyr_4609at 5467.149 kb on + strand, within Psyr_4609at 5467.149 kb on + strand, within Psyr_4609at 5467.149 kb on + strand, within Psyr_4609at 5467.150 kb on - strand, within Psyr_4609at 5467.150 kb on - strand, within Psyr_4609at 5467.150 kb on - strand, within Psyr_4609at 5467.150 kb on - strand, within Psyr_4609at 5467.150 kb on - strand, within Psyr_4609at 5467.150 kb on - strand, within Psyr_4609at 5467.150 kb on - strand, within Psyr_4609at 5467.150 kb on - strand, within Psyr_4609at 5467.150 kb on - strand, within Psyr_4609at 5467.150 kb on - strand, within Psyr_4609at 5467.150 kb on - strand, within Psyr_4609at 5467.150 kb on - strand, within Psyr_4609at 5467.150 kb on - strand, within Psyr_4609at 5467.150 kb on - strand, within Psyr_4609at 5467.150 kb on - strand, within Psyr_4609at 5467.153 kb on + strand, within Psyr_4609at 5467.153 kb on + strand, within Psyr_4609at 5467.153 kb on + strand, within Psyr_4609at 5467.153 kb on + strand, within Psyr_4609at 5467.153 kb on + strand, within Psyr_4609at 5467.153 kb on + strand, within Psyr_4609at 5467.153 kb on + strand, within Psyr_4609at 5467.153 kb on + strand, within Psyr_4609at 5467.153 kb on + strand, within Psyr_4609at 5467.153 kb on + strand, within Psyr_4609at 5467.153 kb on + strand, within Psyr_4609at 5467.153 kb on + strand, within Psyr_4609at 5467.153 kb on + strand, within Psyr_4609at 5467.154 kb on - strand, within Psyr_4609at 5467.154 kb on - strand, within Psyr_4609at 5467.154 kb on - strand, within Psyr_4609at 5467.154 kb on - strand, within Psyr_4609at 5467.154 kb on - strand, within Psyr_4609at 5467.154 kb on - strand, within Psyr_4609at 5467.154 kb on - strand, within Psyr_4609at 5467.154 kb on - strand, within Psyr_4609at 5467.154 kb on - strand, within Psyr_4609at 5467.154 kb on - strand, within Psyr_4609at 5467.154 kb on - strand, within Psyr_4609at 5467.154 kb on - strand, within Psyr_4609at 5467.154 kb on - strand, within Psyr_4609at 5467.154 kb on - strand, within Psyr_4609at 5467.154 kb on - strand, within Psyr_4609at 5467.155 kb on + strand, within Psyr_4609at 5467.155 kb on + strand, within Psyr_4609at 5467.155 kb on + strand, within Psyr_4609at 5467.155 kb on + strand, within Psyr_4609at 5467.155 kb on + strand, within Psyr_4609at 5467.155 kb on + strand, within Psyr_4609at 5467.155 kb on + strand, within Psyr_4609at 5467.155 kb on + strand, within Psyr_4609at 5467.155 kb on + strand, within Psyr_4609at 5467.156 kb on - strand, within Psyr_4609at 5467.156 kb on - strand, within Psyr_4609at 5467.156 kb on - strand, within Psyr_4609at 5467.156 kb on - strand, within Psyr_4609at 5467.156 kb on - strand, within Psyr_4609at 5467.156 kb on - strand, within Psyr_4609at 5467.156 kb on - strand, within Psyr_4609at 5467.238 kb on + strand, within Psyr_4609at 5467.269 kb on + strand, within Psyr_4609at 5467.269 kb on + strand, within Psyr_4609at 5467.269 kb on + strand, within Psyr_4609at 5467.269 kb on + strand, within Psyr_4609at 5467.270 kb on - strand, within Psyr_4609at 5467.270 kb on - strand, within Psyr_4609at 5467.270 kb on - strand, within Psyr_4609at 5467.270 kb on - strand, within Psyr_4609at 5467.270 kb on - strand, within Psyr_4609at 5467.270 kb on - strand, within Psyr_4609at 5467.270 kb on - strand, within Psyr_4609at 5467.283 kb on - strand, within Psyr_4609at 5467.299 kb on + strand, within Psyr_4609at 5467.435 kb on - strand, within Psyr_4609at 5467.587 kb on + strand, within Psyr_4609at 5467.588 kb on - strand, within Psyr_4609at 5467.588 kb on - strand, within Psyr_4609at 5467.665 kb on + strand, within Psyr_4609at 5467.845 kb on + strandat 5467.845 kb on + strandat 5467.845 kb on + strandat 5467.845 kb on + strandat 5467.845 kb on + strandat 5467.845 kb on + strandat 5467.846 kb on - strandat 5467.875 kb on + strandat 5467.876 kb on - strandat 5467.935 kb on + strandat 5467.936 kb on - strandat 5467.936 kb on - strandat 5468.011 kb on - strandat 5468.011 kb on - strandat 5468.157 kb on + strand, within Psyr_4610at 5468.157 kb on + strand, within Psyr_4610at 5468.157 kb on + strand, within Psyr_4610at 5468.157 kb on + strand, within Psyr_4610at 5468.157 kb on + strand, within Psyr_4610at 5468.158 kb on - strand, within Psyr_4610at 5468.158 kb on - strand, within Psyr_4610at 5468.158 kb on - strand, within Psyr_4610at 5468.158 kb on - strand, within Psyr_4610at 5468.254 kb on + strand, within Psyr_4610at 5468.255 kb on - strand, within Psyr_4610at 5468.261 kb on - strand, within Psyr_4610at 5468.588 kb on - strand, within Psyr_4610

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Lima bean
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5,466,259 + -1.0
5,466,259 + +0.3
5,466,259 + +0.1
5,466,259 + -0.6
5,466,259 + +0.3
5,466,259 + -1.0
5,466,259 + -0.2
5,466,259 + +0.7
5,466,259 + +0.2
5,466,259 + -0.6
5,466,261 + -1.4
5,466,261 + -0.9
5,466,261 + +0.9
5,466,261 + +0.4
5,466,261 + -0.6
5,466,434 + +0.9
5,466,444 + -0.8
5,466,444 + -0.3
5,466,444 + +2.3
5,466,614 + -0.8
5,466,614 + -2.4
5,466,614 + -2.1
5,466,614 + -3.1
5,466,615 - -4.2
5,466,615 - -3.5
5,466,615 - -2.2
5,466,615 - -3.4
5,466,615 - -2.4
5,467,149 + Psyr_4609 0.44 -3.5
5,467,149 + Psyr_4609 0.44 -1.9
5,467,149 + Psyr_4609 0.44 -2.4
5,467,149 + Psyr_4609 0.44 -4.3
5,467,149 + Psyr_4609 0.44 -3.5
5,467,149 + Psyr_4609 0.44 -2.8
5,467,150 - Psyr_4609 0.44 -2.0
5,467,150 - Psyr_4609 0.44 -3.8
5,467,150 - Psyr_4609 0.44 -3.6
5,467,150 - Psyr_4609 0.44 -0.4
5,467,150 - Psyr_4609 0.44 -3.3
5,467,150 - Psyr_4609 0.44 -2.0
5,467,150 - Psyr_4609 0.44 -1.9
5,467,150 - Psyr_4609 0.44 -2.4
5,467,150 - Psyr_4609 0.44 -1.7
5,467,150 - Psyr_4609 0.44 -3.4
5,467,150 - Psyr_4609 0.44 -2.0
5,467,150 - Psyr_4609 0.44 -1.9
5,467,150 - Psyr_4609 0.44 +1.1
5,467,150 - Psyr_4609 0.44 -1.4
5,467,150 - Psyr_4609 0.44 -4.3
5,467,153 + Psyr_4609 0.44 -0.4
5,467,153 + Psyr_4609 0.44 -2.8
5,467,153 + Psyr_4609 0.44 -3.3
5,467,153 + Psyr_4609 0.44 -2.7
5,467,153 + Psyr_4609 0.44 -2.7
5,467,153 + Psyr_4609 0.44 -3.5
5,467,153 + Psyr_4609 0.44 -4.3
5,467,153 + Psyr_4609 0.44 -1.4
5,467,153 + Psyr_4609 0.44 -2.1
5,467,153 + Psyr_4609 0.44 -3.4
5,467,153 + Psyr_4609 0.44 -4.3
5,467,153 + Psyr_4609 0.44 -3.6
5,467,153 + Psyr_4609 0.44 -2.3
5,467,154 - Psyr_4609 0.45 -1.7
5,467,154 - Psyr_4609 0.45 -4.5
5,467,154 - Psyr_4609 0.45 -3.2
5,467,154 - Psyr_4609 0.45 -2.2
5,467,154 - Psyr_4609 0.45 -1.7
5,467,154 - Psyr_4609 0.45 +1.1
5,467,154 - Psyr_4609 0.45 -1.9
5,467,154 - Psyr_4609 0.45 -2.6
5,467,154 - Psyr_4609 0.45 -2.8
5,467,154 - Psyr_4609 0.45 -3.0
5,467,154 - Psyr_4609 0.45 -3.3
5,467,154 - Psyr_4609 0.45 -4.3
5,467,154 - Psyr_4609 0.45 -3.3
5,467,154 - Psyr_4609 0.45 -3.0
5,467,154 - Psyr_4609 0.45 -3.1
5,467,155 + Psyr_4609 0.45 -2.3
5,467,155 + Psyr_4609 0.45 -1.7
5,467,155 + Psyr_4609 0.45 -2.7
5,467,155 + Psyr_4609 0.45 -3.2
5,467,155 + Psyr_4609 0.45 -3.6
5,467,155 + Psyr_4609 0.45 -1.4
5,467,155 + Psyr_4609 0.45 +0.3
5,467,155 + Psyr_4609 0.45 -1.4
5,467,155 + Psyr_4609 0.45 -3.1
5,467,156 - Psyr_4609 0.45 -2.3
5,467,156 - Psyr_4609 0.45 -3.4
5,467,156 - Psyr_4609 0.45 -0.7
5,467,156 - Psyr_4609 0.45 -4.2
5,467,156 - Psyr_4609 0.45 -2.2
5,467,156 - Psyr_4609 0.45 -1.7
5,467,156 - Psyr_4609 0.45 -2.4
5,467,238 + Psyr_4609 0.50 -3.3
5,467,269 + Psyr_4609 0.52 -3.3
5,467,269 + Psyr_4609 0.52 -1.4
5,467,269 + Psyr_4609 0.52 -2.0
5,467,269 + Psyr_4609 0.52 -3.5
5,467,270 - Psyr_4609 0.52 -2.2
5,467,270 - Psyr_4609 0.52 -3.6
5,467,270 - Psyr_4609 0.52 -2.9
5,467,270 - Psyr_4609 0.52 -2.4
5,467,270 - Psyr_4609 0.52 -2.4
5,467,270 - Psyr_4609 0.52 -3.6
5,467,270 - Psyr_4609 0.52 -2.3
5,467,283 - Psyr_4609 0.53 -1.7
5,467,299 + Psyr_4609 0.54 -3.0
5,467,435 - Psyr_4609 0.63 -3.0
5,467,587 + Psyr_4609 0.74 -0.9
5,467,588 - Psyr_4609 0.74 -4.5
5,467,588 - Psyr_4609 0.74 -3.8
5,467,665 + Psyr_4609 0.79 -3.0
5,467,845 + -1.2
5,467,845 + -3.7
5,467,845 + -3.7
5,467,845 + -3.0
5,467,845 + -2.0
5,467,845 + -4.4
5,467,846 - -3.5
5,467,875 + -2.2
5,467,876 - -3.3
5,467,935 + -3.4
5,467,936 - -1.4
5,467,936 - -4.0
5,468,011 - -0.8
5,468,011 - -0.3
5,468,157 + Psyr_4610 0.14 -2.2
5,468,157 + Psyr_4610 0.14 +0.1
5,468,157 + Psyr_4610 0.14 -3.5
5,468,157 + Psyr_4610 0.14 -0.2
5,468,157 + Psyr_4610 0.14 -1.4
5,468,158 - Psyr_4610 0.14 -0.3
5,468,158 - Psyr_4610 0.14 -0.0
5,468,158 - Psyr_4610 0.14 -0.6
5,468,158 - Psyr_4610 0.14 -1.1
5,468,254 + Psyr_4610 0.25 -0.5
5,468,255 - Psyr_4610 0.26 -0.1
5,468,261 - Psyr_4610 0.26 +0.2
5,468,588 - Psyr_4610 0.66 +1.6

Or see this region's nucleotide sequence