Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1510

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
1,695,114	-				+1.3
1,695,131	+				+1.9
1,695,132	-				-0.4
1,695,132	-				-1.4
1,695,132	-				+0.2
1,695,140	+				+0.8
1,695,140	+				-1.3
1,695,140	+				-1.1
1,695,144	+				+1.3
1,695,144	+				+0.9
1,695,144	+				-0.5
1,695,144	+				+0.8
1,695,145	-				+0.1
1,695,185	+				-0.8
1,695,185	+				-1.7
1,695,186	-				-0.3
1,695,210	+				-0.1
1,695,211	-				-0.4
1,695,211	-				+0.9
1,695,211	-				-1.3
1,695,242	+				-1.2
1,695,242	+				+0.4
1,695,248	+				-2.2
1,695,249	-				-0.5
1,695,249	-				+1.2
1,695,347	+				-2.2
1,695,347	+				+1.5
1,695,347	+				-0.6
1,695,347	+				+0.5
1,695,348	-				+1.8
1,695,348	-				+2.4
1,695,348	-				+0.2
1,695,405	+				-0.4
1,695,414	+				+0.9
1,695,415	-				+0.5
1,695,432	+				+0.4
1,695,433	-				+0.3
1,695,433	-				+0.9
1,695,446	-				-2.4
1,695,494	+				+0.2
1,695,495	-				-0.6
1,695,495	-				+0.3
1,695,554	+				+0.4
1,695,555	-				-0.5
1,695,568	+				+3.3
1,695,569	-				+2.4
1,695,569	-				+0.1
1,695,669	+				+0.4
1,695,814	+		Psyr_1509	0.40	+1.9
1,695,814	+		Psyr_1509	0.40	+0.0
1,695,863	-		Psyr_1509	0.51	-0.8
1,695,922	+		Psyr_1509	0.64	-1.0
1,695,922	+		Psyr_1509	0.64	+1.9
1,695,922	+		Psyr_1509	0.64	-1.2
1,695,923	-		Psyr_1509	0.64	+1.2
1,695,923	-		Psyr_1509	0.64	-0.1
1,695,928	+		Psyr_1509	0.66	-2.3
1,695,950	-		Psyr_1509	0.71	+0.9
1,695,962	+		Psyr_1509	0.73	-2.2
1,695,963	-		Psyr_1509	0.73	+1.7
1,695,963	-		Psyr_1509	0.73	+0.5
1,695,984	+		Psyr_1509	0.78	+0.0
1,696,025	-		Psyr_1509	0.88	+0.1
1,696,046	+				-0.8
1,696,046	+				+0.4
1,696,069	+				+0.9
1,696,082	+				+1.4
1,696,082	+				+3.7
1,696,082	+				-1.5
1,696,083	-				+0.6
1,696,083	-				-0.4
1,696,083	-				+0.1
1,696,083	-				+0.7
1,696,083	-				+0.8
1,696,100	+				-0.4
1,696,100	+				-0.3
1,696,100	+				-0.3
1,696,100	+				+0.8
1,696,100	+				-0.6
1,696,101	-				+0.2
1,696,101	-				+0.8
1,696,101	-				-1.4
1,696,101	-				-0.4
1,696,101	-				-2.8
1,696,101	-				+0.0
1,696,220	+				-0.3
1,696,220	+				-0.3
1,696,238	+				-1.5
1,696,238	+				-3.1
1,696,238	+				-2.8
1,696,238	+				-0.2
1,696,238	+				-3.0
1,696,238	+				-0.1
1,696,239	-				+1.4
1,696,239	-				+0.5
1,696,239	-				+0.1
1,696,242	+				-2.2
1,696,242	+				-0.2
1,696,243	-				+0.3
1,696,369	-		Psyr_1510	0.18	+1.7
1,696,369	-		Psyr_1510	0.18	-0.7
1,696,421	+		Psyr_1510	0.22	+2.5
1,696,422	-		Psyr_1510	0.22	+0.9
1,696,485	-		Psyr_1510	0.27	+0.2
1,696,532	+		Psyr_1510	0.30	-3.0
1,696,532	+		Psyr_1510	0.30	+0.9
1,696,532	+		Psyr_1510	0.30	-1.5
1,696,532	+		Psyr_1510	0.30	-0.6
1,696,532	+		Psyr_1510	0.30	-1.1
1,696,532	+		Psyr_1510	0.30	-0.4
1,696,533	-		Psyr_1510	0.30	-1.4
1,696,533	-		Psyr_1510	0.30	+1.3
1,696,533	-		Psyr_1510	0.30	-1.1
1,696,533	-		Psyr_1510	0.30	-1.2
1,696,533	-		Psyr_1510	0.30	-1.3
1,696,533	-		Psyr_1510	0.30	+0.6
1,696,560	-		Psyr_1510	0.32	+2.3
1,696,667	+		Psyr_1510	0.40	+0.6
1,696,667	+		Psyr_1510	0.40	+0.3
1,696,668	-		Psyr_1510	0.40	-0.8
1,696,668	-		Psyr_1510	0.40	-0.5
1,696,669	+		Psyr_1510	0.40	+0.9
1,696,669	+		Psyr_1510	0.40	-2.4
1,696,669	+		Psyr_1510	0.40	-1.8
1,696,669	+		Psyr_1510	0.40	+0.5
1,696,669	+		Psyr_1510	0.40	+0.6
1,696,669	+		Psyr_1510	0.40	-1.2
1,696,669	+		Psyr_1510	0.40	-0.5
1,696,669	+		Psyr_1510	0.40	-0.7
1,696,669	+		Psyr_1510	0.40	+0.1
1,696,669	+		Psyr_1510	0.40	+0.9
1,696,669	+		Psyr_1510	0.40	-1.8
1,696,669	+		Psyr_1510	0.40	-0.3
1,696,670	-		Psyr_1510	0.40	-0.4
1,696,670	-		Psyr_1510	0.40	+1.1
1,696,670	-		Psyr_1510	0.40	-1.1
1,696,670	-		Psyr_1510	0.40	-2.8
1,696,670	-		Psyr_1510	0.40	+0.6
1,696,670	-		Psyr_1510	0.40	-0.7
1,696,670	-		Psyr_1510	0.40	-0.2
1,696,670	-		Psyr_1510	0.40	+2.4
1,696,670	-		Psyr_1510	0.40	+1.1
1,696,670	-		Psyr_1510	0.40	+2.6
1,696,670	-		Psyr_1510	0.40	-1.8
1,696,670	-		Psyr_1510	0.40	-2.2
1,696,670	-		Psyr_1510	0.40	+0.1
1,696,670	-		Psyr_1510	0.40	+0.7
1,696,670	-		Psyr_1510	0.40	+0.6
1,696,670	-		Psyr_1510	0.40	+1.1
1,696,670	-		Psyr_1510	0.40	-1.3
1,696,800	+		Psyr_1510	0.49	-2.0
1,696,800	+		Psyr_1510	0.49	-3.4
1,696,800	+		Psyr_1510	0.49	-2.4
1,696,801	-		Psyr_1510	0.49	-0.4
1,696,801	-		Psyr_1510	0.49	-0.2
1,696,929	-		Psyr_1510	0.58	-1.1
1,697,000	+		Psyr_1510	0.63	-1.2
1,697,000	+		Psyr_1510	0.63	-0.5
1,697,001	-		Psyr_1510	0.63	-1.4
1,697,001	-		Psyr_1510	0.63	+0.5
1,697,032	+		Psyr_1510	0.65	-0.2
1,697,032	+		Psyr_1510	0.65	+0.5
1,697,240	+		Psyr_1510	0.80	+0.8
1,697,240	+		Psyr_1510	0.80	-0.3
1,697,240	+		Psyr_1510	0.80	+0.6
1,697,240	+		Psyr_1510	0.80	-1.1
1,697,240	+		Psyr_1510	0.80	-1.4
1,697,240	+		Psyr_1510	0.80	-0.5
1,697,241	-		Psyr_1510	0.80	+1.3
1,697,241	-		Psyr_1510	0.80	+0.8
1,697,241	-		Psyr_1510	0.80	+0.3
1,697,255	-		Psyr_1510	0.81	-0.2
1,697,304	-		Psyr_1510	0.85	-1.6
1,697,304	-		Psyr_1510	0.85	-0.3
1,697,330	+		Psyr_1510	0.87	+1.4
1,697,330	+		Psyr_1510	0.87	+0.9
1,697,330	+		Psyr_1510	0.87	+0.3
1,697,331	-		Psyr_1510	0.87	-1.3
1,697,334	+		Psyr_1510	0.87	-0.1
1,697,335	-		Psyr_1510	0.87	+0.2
1,697,381	+				-0.6
1,697,382	-				+2.1
1,697,382	-				+0.2
1,697,382	-				+0.5
1,697,382	-				-2.4
1,697,382	-				+0.2
1,697,422	+				+0.3
1,697,423	-				-0.2
1,697,423	-				+0.2
1,697,682	+		Psyr_1511	0.18	-1.1
1,697,682	+		Psyr_1511	0.18	-1.9
1,697,683	-		Psyr_1511	0.18	-0.1
1,697,683	-		Psyr_1511	0.18	+0.6
1,697,683	-		Psyr_1511	0.18	-2.2
1,697,689	-		Psyr_1511	0.19	+0.4
1,697,689	-		Psyr_1511	0.19	+0.5
1,698,031	-		Psyr_1511	0.55	+1.4
1,698,031	-		Psyr_1511	0.55	+1.7
1,698,069	-		Psyr_1511	0.59	-0.2
1,698,120	-		Psyr_1511	0.65	-2.9
1,698,319	-		Psyr_1511	0.86	-0.8
1,698,384	+				-0.9
1,698,384	+				+3.7
1,698,384	+				+1.0
1,698,384	+				-0.8
1,698,384	+				+0.4
1,698,385	-				+0.1
1,698,385	-				-1.1
1,698,410	-				-0.1
1,698,419	+				-1.1
1,698,478	+				+0.1
1,698,484	+				-0.6
1,698,484	+				+1.6