Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1292

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
1,457,701	+				+0.4
1,457,711	-				-0.6
1,457,742	+				+0.5
1,457,743	-				-0.6
1,457,743	-				+1.6
1,457,743	-				+1.5
1,457,743	-				-2.5
1,457,774	+				+0.8
1,457,774	+				+0.7
1,457,775	-				+0.4
1,457,775	-				-0.6
1,457,775	-				-1.8
1,457,792	-				+0.8
1,457,807	+				-0.2
1,457,807	+				+0.5
1,457,807	+				-0.7
1,457,807	+				-0.3
1,457,807	+				-0.6
1,457,807	+				-0.8
1,457,808	-				+1.6
1,457,808	-				-0.7
1,457,808	-				-0.7
1,457,808	-				+1.3
1,457,808	-				+0.3
1,457,808	-				+0.5
1,457,818	+				+1.4
1,457,819	-				+0.5
1,457,819	-				-0.3
1,457,961	-				-1.2
1,458,036	+				+0.4
1,458,036	+				-0.9
1,458,036	+				-0.5
1,458,093	+				+1.2
1,458,190	+		Psyr_1292	0.11	+1.9
1,458,190	+		Psyr_1292	0.11	-0.7
1,458,190	+		Psyr_1292	0.11	+0.6
1,458,191	-		Psyr_1292	0.11	-0.0
1,458,191	-		Psyr_1292	0.11	+0.5
1,458,191	-		Psyr_1292	0.11	+0.6
1,458,191	-		Psyr_1292	0.11	-0.1
1,458,191	-		Psyr_1292	0.11	-1.3
1,458,191	-		Psyr_1292	0.11	-0.0
1,458,191	-		Psyr_1292	0.11	+0.4
1,458,255	+		Psyr_1292	0.12	-1.8
1,458,255	+		Psyr_1292	0.12	-1.0
1,458,255	+		Psyr_1292	0.12	+0.2
1,458,255	+		Psyr_1292	0.12	-0.8
1,458,256	-		Psyr_1292	0.12	+1.8
1,458,256	-		Psyr_1292	0.12	-0.8
1,458,256	-		Psyr_1292	0.12	-0.0
1,458,256	-		Psyr_1292	0.12	+0.4
1,458,256	-		Psyr_1292	0.12	+0.8
1,458,256	-		Psyr_1292	0.12	+1.5
1,458,256	-		Psyr_1292	0.12	+0.2
1,458,334	+		Psyr_1292	0.14	-2.2
1,458,348	+		Psyr_1292	0.15	-0.4
1,458,349	-		Psyr_1292	0.15	+1.3
1,458,349	-		Psyr_1292	0.15	-1.1
1,458,378	+		Psyr_1292	0.16	-0.8
1,458,379	-		Psyr_1292	0.16	+0.2
1,458,399	-		Psyr_1292	0.16	+0.6
1,458,414	+		Psyr_1292	0.17	+0.6
1,458,414	+		Psyr_1292	0.17	-0.6
1,458,415	-		Psyr_1292	0.17	+1.6
1,458,486	+		Psyr_1292	0.19	+1.6
1,458,486	+		Psyr_1292	0.19	+0.9
1,458,486	+		Psyr_1292	0.19	+0.5
1,458,486	+		Psyr_1292	0.19	-1.0
1,458,486	+		Psyr_1292	0.19	+1.1
1,458,486	+		Psyr_1292	0.19	+1.4
1,458,486	+		Psyr_1292	0.19	+1.2
1,458,486	+		Psyr_1292	0.19	+1.5
1,458,487	-		Psyr_1292	0.19	+2.4
1,458,487	-		Psyr_1292	0.19	-1.2
1,458,487	-		Psyr_1292	0.19	-0.4
1,458,771	+		Psyr_1292	0.27	-1.8
1,458,771	+		Psyr_1292	0.27	+0.1
1,458,771	+		Psyr_1292	0.27	+1.2
1,458,771	+		Psyr_1292	0.27	-0.0
1,458,771	+		Psyr_1292	0.27	+0.9
1,458,771	+		Psyr_1292	0.27	-0.0
1,458,772	-		Psyr_1292	0.27	-1.3
1,458,772	-		Psyr_1292	0.27	-0.6
1,458,772	-		Psyr_1292	0.27	+1.4
1,458,772	-		Psyr_1292	0.27	-3.0
1,458,772	-		Psyr_1292	0.27	-2.0
1,458,772	-		Psyr_1292	0.27	-1.0
1,458,772	-		Psyr_1292	0.27	+0.6
1,458,772	-		Psyr_1292	0.27	-0.6
1,458,772	-		Psyr_1292	0.27	+0.6
1,458,773	+		Psyr_1292	0.27	+1.5
1,458,773	+		Psyr_1292	0.27	-0.1
1,458,774	-		Psyr_1292	0.27	+0.4
1,458,774	-		Psyr_1292	0.27	-0.8
1,458,774	-		Psyr_1292	0.27	+1.5
1,458,777	+		Psyr_1292	0.27	+1.0
1,458,777	+		Psyr_1292	0.27	+0.7
1,458,777	+		Psyr_1292	0.27	+1.5
1,458,777	+		Psyr_1292	0.27	-1.0
1,458,778	-		Psyr_1292	0.27	+1.0
1,458,778	-		Psyr_1292	0.27	+1.4
1,458,778	-		Psyr_1292	0.27	-0.2
1,458,778	-		Psyr_1292	0.27	+0.5
1,458,778	-		Psyr_1292	0.27	+0.4
1,458,778	-		Psyr_1292	0.27	-0.7
1,458,778	-		Psyr_1292	0.27	+0.5
1,458,778	-		Psyr_1292	0.27	-1.6
1,458,778	-		Psyr_1292	0.27	-1.5
1,458,778	-		Psyr_1292	0.27	-1.3
1,458,778	-		Psyr_1292	0.27	-0.2
1,458,778	-		Psyr_1292	0.27	-0.4
1,458,830	+		Psyr_1292	0.28	+1.1
1,458,830	+		Psyr_1292	0.28	+0.8
1,458,830	+		Psyr_1292	0.28	+1.0
1,458,830	+				+1.4
1,458,831	-		Psyr_1292	0.28	-0.0
1,458,831	-		Psyr_1292	0.28	+1.6
1,458,831	-		Psyr_1292	0.28	-0.8
1,458,831	-		Psyr_1292	0.28	-1.3
1,458,831	-		Psyr_1292	0.28	+1.0
1,458,971	+		Psyr_1292	0.32	+1.6
1,458,971	+		Psyr_1292	0.32	-0.1
1,458,971	+		Psyr_1292	0.32	+1.0
1,458,976	-		Psyr_1292	0.32	+1.5
1,458,976	-		Psyr_1292	0.32	-0.0
1,458,992	+		Psyr_1292	0.33	+0.9
1,458,993	-		Psyr_1292	0.33	-0.7
1,458,993	-		Psyr_1292	0.33	-0.3
1,459,060	+		Psyr_1292	0.34	+0.2
1,459,140	-		Psyr_1292	0.37	+1.6
1,459,140	-		Psyr_1292	0.37	+1.5
1,459,143	+		Psyr_1292	0.37	-1.0
1,459,143	+		Psyr_1292	0.37	+1.2
1,459,143	+		Psyr_1292	0.37	-1.3
1,459,143	+		Psyr_1292	0.37	-1.8
1,459,144	-		Psyr_1292	0.37	+0.1
1,459,144	-		Psyr_1292	0.37	-0.3
1,459,144	-		Psyr_1292	0.37	+0.6
1,459,144	-		Psyr_1292	0.37	+1.3
1,459,144	-		Psyr_1292	0.37	-0.5
1,459,213	-		Psyr_1292	0.39	-1.8
1,459,213	-		Psyr_1292	0.39	+0.5
1,459,590	+		Psyr_1292	0.49	-0.3
1,459,590	+		Psyr_1292	0.49	+1.2
1,459,590	+		Psyr_1292	0.49	-0.0
1,459,590	+		Psyr_1292	0.49	-1.0
1,459,591	-		Psyr_1292	0.49	-1.3
1,459,591	-		Psyr_1292	0.49	+0.1
1,459,591	-		Psyr_1292	0.49	+0.5
1,459,635	+		Psyr_1292	0.50	+1.0
1,459,635	+		Psyr_1292	0.50	+0.4
1,459,636	-		Psyr_1292	0.50	-1.2
1,459,737	+		Psyr_1292	0.53	-0.6
1,459,805	+		Psyr_1292	0.55	+1.2
1,459,805	+		Psyr_1292	0.55	-0.0
1,459,805	+		Psyr_1292	0.55	-0.1
1,459,806	-		Psyr_1292	0.55	-0.0
1,459,806	-		Psyr_1292	0.55	+0.1
1,459,806	-		Psyr_1292	0.55	-1.1
1,460,255	-		Psyr_1292	0.67	+1.0
1,460,476	+		Psyr_1292	0.73	-0.5
1,460,477	-		Psyr_1292	0.74	-0.2
1,460,702	+		Psyr_1292	0.80	+0.8
1,460,702	+		Psyr_1292	0.80	+0.2
1,460,703	-		Psyr_1292	0.80	+0.7
1,460,749	+		Psyr_1292	0.81	-0.9
1,460,865	-		Psyr_1292	0.84	+0.9
1,461,311	-				-1.0
1,461,353	-				+1.2
1,461,464	+				-0.6
1,461,501	+				-1.6
1,461,501	+				-0.3
1,461,501	+				-0.1
1,461,501	+				-1.5
1,461,501	+				-0.4
1,461,502	-				-0.6
1,461,502	-				-1.0
1,461,507	+				-0.0
1,461,508	-				+0.1
1,461,508	-				-1.1
1,461,571	+				+1.6
1,461,571	+				+0.7
1,461,572	-				+2.3
1,461,872	+		Psyr_1293	0.30	+0.3
1,461,872	+		Psyr_1293	0.30	+0.9
1,461,872	+		Psyr_1293	0.30	-2.8
1,461,906	-		Psyr_1293	0.32	+1.0
1,461,906	-		Psyr_1293	0.32	+0.6
1,461,906	-		Psyr_1293	0.32	+1.8
1,461,946	+		Psyr_1293	0.35	-2.6
1,461,946	+		Psyr_1293	0.35	+0.2
1,461,946	+		Psyr_1293	0.35	+1.0
1,461,946	+		Psyr_1293	0.35	+0.3
1,461,946	+		Psyr_1293	0.35	+0.4
1,461,946	+		Psyr_1293	0.35	-1.2
1,461,946	+		Psyr_1293	0.35	-0.5
1,461,947	-		Psyr_1293	0.35	+0.2
1,461,947	-		Psyr_1293	0.35	-0.0
1,461,947	-		Psyr_1293	0.35	-1.9
1,461,947	-		Psyr_1293	0.35	+0.9
1,461,947	-		Psyr_1293	0.35	+0.3
1,461,947	-		Psyr_1293	0.35	+1.1
1,461,947	-		Psyr_1293	0.35	+0.3
1,461,947	-		Psyr_1293	0.35	-0.3
1,461,947	-		Psyr_1293	0.35	-1.2
1,461,948	+		Psyr_1293	0.35	-0.1
1,461,948	+		Psyr_1293	0.35	+1.1
1,461,948	+		Psyr_1293	0.35	-0.5
1,461,948	+		Psyr_1293	0.35	+1.0
1,461,949	-		Psyr_1293	0.35	+0.5
1,461,949	-		Psyr_1293	0.35	+1.6
1,461,949	-		Psyr_1293	0.35	+1.0
1,462,026	+		Psyr_1293	0.41	-1.4
1,462,061	+		Psyr_1293	0.43	+1.3
1,462,061	+		Psyr_1293	0.43	-0.9
1,462,061	+		Psyr_1293	0.43	-0.6
1,462,061	+		Psyr_1293	0.43	-0.1
1,462,061	+		Psyr_1293	0.43	-0.0
1,462,137	-		Psyr_1293	0.49	-0.8
1,462,137	-		Psyr_1293	0.49	+0.5