Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0766

Experiment: apoplastic; Lima bean

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0764 and Psyr_0765 are separated by 20 nucleotidesPsyr_0765 and Psyr_0766 are separated by 56 nucleotidesPsyr_0766 and Psyr_0767 are separated by 132 nucleotides Psyr_0764: Psyr_0764 - gluconolactonase, at 870,682 to 871,698 _0764 Psyr_0765: Psyr_0765 - conserved hypothetical protein, at 871,719 to 872,288 _0765 Psyr_0766: Psyr_0766 - Protein of unknown function DUF1440, at 872,345 to 872,839 _0766 Psyr_0767: Psyr_0767 - transcriptional regulator, LysR family, at 872,972 to 873,892 _0767 Position (kb) 872 873Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 871.374 kb on + strand, within Psyr_0764at 871.375 kb on - strand, within Psyr_0764at 871.375 kb on - strand, within Psyr_0764at 871.652 kb on - strandat 871.698 kb on + strandat 871.698 kb on + strandat 871.698 kb on + strandat 871.698 kb on + strandat 871.698 kb on + strandat 871.699 kb on - strandat 871.699 kb on - strandat 871.699 kb on - strandat 871.699 kb on - strandat 871.699 kb on - strandat 871.699 kb on - strandat 871.699 kb on - strandat 871.699 kb on - strandat 871.742 kb on + strandat 871.742 kb on + strandat 871.742 kb on + strandat 871.742 kb on + strandat 871.742 kb on + strandat 871.742 kb on + strandat 871.742 kb on + strandat 871.743 kb on - strandat 871.767 kb on - strandat 871.824 kb on + strand, within Psyr_0765at 871.987 kb on + strand, within Psyr_0765at 872.071 kb on + strand, within Psyr_0765at 872.071 kb on + strand, within Psyr_0765at 872.071 kb on + strand, within Psyr_0765at 872.071 kb on + strand, within Psyr_0765at 872.072 kb on - strand, within Psyr_0765at 872.072 kb on - strand, within Psyr_0765at 872.072 kb on - strand, within Psyr_0765at 872.072 kb on - strand, within Psyr_0765at 872.149 kb on + strand, within Psyr_0765at 872.149 kb on + strand, within Psyr_0765at 872.150 kb on - strand, within Psyr_0765at 872.150 kb on - strand, within Psyr_0765at 872.150 kb on - strand, within Psyr_0765at 872.196 kb on - strand, within Psyr_0765at 872.275 kb on + strandat 872.275 kb on + strandat 872.275 kb on + strandat 872.275 kb on + strandat 872.275 kb on + strandat 872.275 kb on + strandat 872.275 kb on + strandat 872.276 kb on - strandat 872.276 kb on - strandat 872.278 kb on - strandat 872.278 kb on - strandat 872.278 kb on - strandat 872.278 kb on - strandat 872.303 kb on + strandat 872.576 kb on + strand, within Psyr_0766at 872.577 kb on - strand, within Psyr_0766at 872.577 kb on - strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.590 kb on - strand, within Psyr_0766at 872.590 kb on - strand, within Psyr_0766at 872.590 kb on - strand, within Psyr_0766at 872.590 kb on - strand, within Psyr_0766at 872.641 kb on - strand, within Psyr_0766at 872.661 kb on + strand, within Psyr_0766at 872.661 kb on + strand, within Psyr_0766at 872.662 kb on - strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.859 kb on - strandat 872.859 kb on - strandat 872.905 kb on + strandat 872.905 kb on + strandat 872.905 kb on + strandat 872.905 kb on + strandat 872.905 kb on + strandat 872.906 kb on - strandat 872.906 kb on - strandat 872.906 kb on - strandat 872.906 kb on - strandat 872.928 kb on + strandat 872.956 kb on - strandat 872.999 kb on + strandat 873.312 kb on - strand, within Psyr_0767at 873.439 kb on + strand, within Psyr_0767at 873.446 kb on - strand, within Psyr_0767at 873.753 kb on + strand, within Psyr_0767at 873.754 kb on - strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Lima bean
remove
871,374 + Psyr_0764 0.68 -0.9
871,375 - Psyr_0764 0.68 -1.0
871,375 - Psyr_0764 0.68 +2.7
871,652 - +0.5
871,698 + -0.7
871,698 + -1.5
871,698 + +0.9
871,698 + -0.9
871,698 + -1.1
871,699 - -0.4
871,699 - +1.4
871,699 - +0.8
871,699 - -0.5
871,699 - +1.6
871,699 - +0.4
871,699 - +1.3
871,699 - -0.3
871,742 + +0.1
871,742 + +1.1
871,742 + -0.6
871,742 + -0.7
871,742 + +0.1
871,742 + -1.2
871,742 + +1.5
871,743 - -1.4
871,767 - +0.6
871,824 + Psyr_0765 0.18 -2.9
871,987 + Psyr_0765 0.47 +0.1
872,071 + Psyr_0765 0.62 -1.1
872,071 + Psyr_0765 0.62 -1.0
872,071 + Psyr_0765 0.62 +1.9
872,071 + Psyr_0765 0.62 -0.9
872,072 - Psyr_0765 0.62 +1.0
872,072 - Psyr_0765 0.62 +1.2
872,072 - Psyr_0765 0.62 +0.2
872,072 - Psyr_0765 0.62 -0.3
872,149 + Psyr_0765 0.75 +0.5
872,149 + Psyr_0765 0.75 +1.4
872,150 - Psyr_0765 0.76 +0.2
872,150 - Psyr_0765 0.76 -0.7
872,150 - Psyr_0765 0.76 +0.1
872,196 - Psyr_0765 0.84 +2.5
872,275 + +1.0
872,275 + -1.2
872,275 + +0.1
872,275 + -0.3
872,275 + +1.0
872,275 + -0.6
872,275 + +0.8
872,276 - -0.6
872,276 - +1.6
872,278 - +0.8
872,278 - +0.4
872,278 - +0.9
872,278 - -2.7
872,303 + +2.1
872,576 + Psyr_0766 0.47 -0.3
872,577 - Psyr_0766 0.47 +0.3
872,577 - Psyr_0766 0.47 -0.9
872,589 + Psyr_0766 0.49 -0.5
872,589 + Psyr_0766 0.49 -0.4
872,589 + Psyr_0766 0.49 -0.1
872,589 + Psyr_0766 0.49 +1.6
872,589 + Psyr_0766 0.49 +1.1
872,589 + Psyr_0766 0.49 -0.5
872,589 + Psyr_0766 0.49 +0.6
872,590 - Psyr_0766 0.49 +0.8
872,590 - Psyr_0766 0.49 +1.4
872,590 - Psyr_0766 0.49 +0.4
872,590 - Psyr_0766 0.49 +0.9
872,641 - Psyr_0766 0.60 -1.1
872,661 + Psyr_0766 0.64 +0.3
872,661 + Psyr_0766 0.64 +0.3
872,662 - Psyr_0766 0.64 -1.7
872,667 + Psyr_0766 0.65 +2.4
872,667 + Psyr_0766 0.65 +2.0
872,667 + Psyr_0766 0.65 +1.7
872,667 + Psyr_0766 0.65 -0.4
872,667 + Psyr_0766 0.65 -1.7
872,667 + Psyr_0766 0.65 +0.1
872,667 + Psyr_0766 0.65 +1.6
872,667 + Psyr_0766 0.65 -0.7
872,667 + Psyr_0766 0.65 -0.2
872,667 + Psyr_0766 0.65 +0.1
872,667 + Psyr_0766 0.65 +0.5
872,667 + Psyr_0766 0.65 -0.3
872,667 + Psyr_0766 0.65 +0.4
872,667 + Psyr_0766 0.65 -1.4
872,667 + Psyr_0766 0.65 -1.9
872,667 + Psyr_0766 0.65 +1.3
872,667 + Psyr_0766 0.65 -1.2
872,667 + Psyr_0766 0.65 -1.9
872,667 + Psyr_0766 0.65 +1.3
872,667 + Psyr_0766 0.65 +0.7
872,667 + Psyr_0766 0.65 -1.3
872,667 + Psyr_0766 0.65 -0.4
872,667 + Psyr_0766 0.65 -0.3
872,667 + Psyr_0766 0.65 +0.4
872,667 + Psyr_0766 0.65 +2.2
872,667 + Psyr_0766 0.65 +0.6
872,667 + Psyr_0766 0.65 -2.4
872,667 + Psyr_0766 0.65 -0.4
872,667 + Psyr_0766 0.65 -0.3
872,667 + Psyr_0766 0.65 +0.5
872,667 + Psyr_0766 0.65 -0.5
872,667 + Psyr_0766 0.65 +1.5
872,667 + Psyr_0766 0.65 +0.8
872,668 - Psyr_0766 0.65 -2.3
872,668 - Psyr_0766 0.65 +0.7
872,668 - Psyr_0766 0.65 +2.9
872,668 - Psyr_0766 0.65 -2.0
872,668 - Psyr_0766 0.65 +1.6
872,668 - Psyr_0766 0.65 +1.0
872,668 - Psyr_0766 0.65 -0.2
872,668 - Psyr_0766 0.65 +0.7
872,668 - Psyr_0766 0.65 +0.0
872,668 - Psyr_0766 0.65 +1.3
872,668 - Psyr_0766 0.65 -0.9
872,668 - Psyr_0766 0.65 +0.3
872,668 - Psyr_0766 0.65 -0.3
872,668 - Psyr_0766 0.65 -1.7
872,668 - Psyr_0766 0.65 -1.0
872,668 - Psyr_0766 0.65 +0.0
872,668 - Psyr_0766 0.65 +0.1
872,668 - Psyr_0766 0.65 -0.7
872,668 - Psyr_0766 0.65 +0.7
872,668 - Psyr_0766 0.65 -0.2
872,668 - Psyr_0766 0.65 -0.3
872,668 - Psyr_0766 0.65 +0.8
872,668 - Psyr_0766 0.65 +0.6
872,668 - Psyr_0766 0.65 -0.4
872,668 - Psyr_0766 0.65 -2.2
872,668 - Psyr_0766 0.65 +0.4
872,668 - Psyr_0766 0.65 +3.4
872,668 - Psyr_0766 0.65 +1.0
872,859 - -2.3
872,859 - +2.7
872,905 + +0.2
872,905 + +0.3
872,905 + +2.9
872,905 + +2.0
872,905 + -0.0
872,906 - -0.1
872,906 - +0.3
872,906 - +0.1
872,906 - -1.0
872,928 + +0.8
872,956 - +0.6
872,999 + -0.1
873,312 - Psyr_0767 0.37 -1.0
873,439 + Psyr_0767 0.51 -0.2
873,446 - Psyr_0767 0.51 +0.2
873,753 + Psyr_0767 0.85 -0.4
873,754 - Psyr_0767 0.85 +1.5
873,779 + Psyr_0767 0.88 +1.5
873,779 + Psyr_0767 0.88 +0.1
873,779 + Psyr_0767 0.88 +0.1
873,779 + Psyr_0767 0.88 +0.8
873,780 - Psyr_0767 0.88 -0.9
873,780 - Psyr_0767 0.88 +0.1
873,780 - Psyr_0767 0.88 -0.5
873,780 - Psyr_0767 0.88 +0.1
873,780 - Psyr_0767 0.88 +0.5
873,780 - Psyr_0767 0.88 +0.6
873,780 - Psyr_0767 0.88 +0.1
873,780 - Psyr_0767 0.88 +0.4
873,780 - Psyr_0767 0.88 +1.3

Or see this region's nucleotide sequence