Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0683

Experiment: apoplastic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0682 and Psyr_0683 are separated by 120 nucleotidesPsyr_0683 and Psyr_0684 are separated by 96 nucleotidesPsyr_0684 and Psyr_0685 overlap by 14 nucleotides Psyr_0682: Psyr_0682 - DNA helicase/exodeoxyribonuclease V, alpha subunit, at 784,699 to 786,792 _0682 Psyr_0683: Psyr_0683 - NUDIX hydrolase, at 786,913 to 787,317 _0683 Psyr_0684: Psyr_0684 - hypothetical protein, at 787,414 to 787,830 _0684 Psyr_0685: Psyr_0685 - PAAR, at 787,817 to 788,956 _0685 Position (kb) 786 787 788Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 786.836 kb on + strandat 786.836 kb on + strandat 786.837 kb on - strandat 786.837 kb on - strandat 786.837 kb on - strandat 786.854 kb on - strandat 786.860 kb on + strandat 786.906 kb on + strandat 786.906 kb on + strandat 786.906 kb on + strandat 786.907 kb on - strandat 787.062 kb on - strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.273 kb on - strand, within Psyr_0683at 787.273 kb on - strand, within Psyr_0683at 787.273 kb on - strand, within Psyr_0683at 787.311 kb on + strandat 787.311 kb on + strandat 787.312 kb on - strandat 787.343 kb on + strandat 787.343 kb on + strandat 787.343 kb on + strandat 787.344 kb on - strandat 787.344 kb on - strandat 787.344 kb on - strandat 787.344 kb on - strandat 787.344 kb on - strandat 787.369 kb on + strandat 787.370 kb on - strandat 787.370 kb on - strandat 787.370 kb on - strandat 787.498 kb on - strand, within Psyr_0684at 787.514 kb on + strand, within Psyr_0684at 787.514 kb on + strand, within Psyr_0684at 787.514 kb on + strand, within Psyr_0684at 787.515 kb on - strand, within Psyr_0684at 787.515 kb on - strand, within Psyr_0684at 787.515 kb on - strand, within Psyr_0684at 787.515 kb on - strand, within Psyr_0684at 787.515 kb on - strand, within Psyr_0684at 787.573 kb on - strand, within Psyr_0684at 787.597 kb on - strand, within Psyr_0684at 787.620 kb on + strand, within Psyr_0684at 787.620 kb on + strand, within Psyr_0684at 787.620 kb on + strand, within Psyr_0684at 787.621 kb on - strand, within Psyr_0684at 787.621 kb on - strand, within Psyr_0684at 787.621 kb on - strand, within Psyr_0684at 787.621 kb on - strand, within Psyr_0684at 787.621 kb on - strand, within Psyr_0684at 787.691 kb on - strand, within Psyr_0684at 787.691 kb on - strand, within Psyr_0684at 787.694 kb on + strand, within Psyr_0684at 787.695 kb on - strand, within Psyr_0684at 787.725 kb on - strand, within Psyr_0684at 787.727 kb on + strand, within Psyr_0684at 787.727 kb on + strand, within Psyr_0684at 787.727 kb on + strand, within Psyr_0684at 787.727 kb on + strand, within Psyr_0684at 787.728 kb on - strand, within Psyr_0684at 787.728 kb on - strand, within Psyr_0684at 787.728 kb on - strand, within Psyr_0684at 787.728 kb on - strand, within Psyr_0684at 787.728 kb on - strand, within Psyr_0684at 787.728 kb on - strand, within Psyr_0684at 787.728 kb on - strand, within Psyr_0684at 787.750 kb on + strand, within Psyr_0684at 787.750 kb on + strand, within Psyr_0684at 787.751 kb on - strand, within Psyr_0684at 787.751 kb on - strand, within Psyr_0684at 787.751 kb on - strand, within Psyr_0684at 787.751 kb on - strand, within Psyr_0684at 787.751 kb on - strand, within Psyr_0684at 787.754 kb on + strand, within Psyr_0684at 787.754 kb on + strand, within Psyr_0684at 787.754 kb on + strand, within Psyr_0684at 787.754 kb on + strand, within Psyr_0684at 787.755 kb on - strand, within Psyr_0684at 787.786 kb on + strand, within Psyr_0684at 787.786 kb on + strand, within Psyr_0684at 787.786 kb on + strand, within Psyr_0684at 787.786 kb on + strand, within Psyr_0684at 787.787 kb on - strand, within Psyr_0684at 787.787 kb on - strand, within Psyr_0684at 787.787 kb on - strand, within Psyr_0684at 787.787 kb on - strand, within Psyr_0684at 787.789 kb on - strandat 787.789 kb on - strandat 787.806 kb on - strandat 787.860 kb on - strandat 787.860 kb on - strandat 787.861 kb on + strandat 787.861 kb on + strandat 787.861 kb on + strandat 787.861 kb on + strandat 787.861 kb on + strandat 787.861 kb on + strandat 787.862 kb on - strandat 787.862 kb on - strandat 787.862 kb on - strandat 787.862 kb on - strandat 787.862 kb on - strandat 787.862 kb on - strandat 787.862 kb on - strandat 787.862 kb on - strandat 787.862 kb on - strandat 787.865 kb on + strandat 787.865 kb on + strandat 787.926 kb on + strandat 787.927 kb on - strandat 788.036 kb on + strand, within Psyr_0685at 788.036 kb on + strand, within Psyr_0685at 788.037 kb on - strand, within Psyr_0685at 788.037 kb on - strand, within Psyr_0685at 788.037 kb on - strand, within Psyr_0685at 788.107 kb on + strand, within Psyr_0685at 788.108 kb on - strand, within Psyr_0685at 788.125 kb on - strand, within Psyr_0685at 788.149 kb on + strand, within Psyr_0685at 788.150 kb on - strand, within Psyr_0685at 788.150 kb on - strand, within Psyr_0685at 788.155 kb on - strand, within Psyr_0685at 788.155 kb on - strand, within Psyr_0685at 788.155 kb on - strand, within Psyr_0685at 788.160 kb on + strand, within Psyr_0685at 788.161 kb on - strand, within Psyr_0685at 788.161 kb on - strand, within Psyr_0685at 788.161 kb on - strand, within Psyr_0685at 788.210 kb on + strand, within Psyr_0685at 788.294 kb on - strand, within Psyr_0685

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Lima bean
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786,836 + -0.2
786,836 + +0.7
786,837 - -1.4
786,837 - +0.6
786,837 - -0.2
786,854 - -2.0
786,860 + -0.2
786,906 + +0.0
786,906 + +0.9
786,906 + +0.7
786,907 - -0.3
787,062 - Psyr_0683 0.37 +0.8
787,134 + Psyr_0683 0.55 -0.3
787,134 + Psyr_0683 0.55 +0.9
787,134 + Psyr_0683 0.55 -0.2
787,134 + Psyr_0683 0.55 -0.5
787,134 + Psyr_0683 0.55 -1.8
787,134 + Psyr_0683 0.55 +1.2
787,134 + Psyr_0683 0.55 -0.2
787,134 + Psyr_0683 0.55 -0.8
787,134 + Psyr_0683 0.55 -1.2
787,134 + Psyr_0683 0.55 -0.3
787,134 + Psyr_0683 0.55 +2.2
787,134 + Psyr_0683 0.55 +0.8
787,134 + Psyr_0683 0.55 +0.6
787,134 + Psyr_0683 0.55 -2.4
787,134 + Psyr_0683 0.55 +0.6
787,134 + Psyr_0683 0.55 +0.7
787,134 + Psyr_0683 0.55 +0.5
787,134 + Psyr_0683 0.55 +0.2
787,134 + Psyr_0683 0.55 +0.6
787,135 - Psyr_0683 0.55 -0.3
787,135 - Psyr_0683 0.55 +0.2
787,135 - Psyr_0683 0.55 +0.5
787,135 - Psyr_0683 0.55 +0.1
787,135 - Psyr_0683 0.55 +0.8
787,135 - Psyr_0683 0.55 -0.3
787,135 - Psyr_0683 0.55 -0.8
787,135 - Psyr_0683 0.55 +0.9
787,135 - Psyr_0683 0.55 +0.2
787,135 - Psyr_0683 0.55 +0.6
787,135 - Psyr_0683 0.55 -1.0
787,135 - Psyr_0683 0.55 -2.6
787,135 - Psyr_0683 0.55 +1.3
787,135 - Psyr_0683 0.55 +3.0
787,135 - Psyr_0683 0.55 +2.2
787,135 - Psyr_0683 0.55 +0.8
787,135 - Psyr_0683 0.55 +0.7
787,135 - Psyr_0683 0.55 -0.4
787,273 - Psyr_0683 0.89 +0.3
787,273 - Psyr_0683 0.89 +1.7
787,273 - Psyr_0683 0.89 +0.5
787,311 + +1.5
787,311 + +0.5
787,312 - -1.0
787,343 + +0.3
787,343 + -1.2
787,343 + -0.2
787,344 - +0.1
787,344 - -1.8
787,344 - -2.8
787,344 - -0.9
787,344 - -1.1
787,369 + +0.9
787,370 - -1.3
787,370 - +0.2
787,370 - +0.8
787,498 - Psyr_0684 0.20 +0.3
787,514 + Psyr_0684 0.24 -2.7
787,514 + Psyr_0684 0.24 -0.6
787,514 + Psyr_0684 0.24 -0.4
787,515 - Psyr_0684 0.24 -1.3
787,515 - Psyr_0684 0.24 +0.3
787,515 - Psyr_0684 0.24 -1.3
787,515 - Psyr_0684 0.24 +0.7
787,515 - Psyr_0684 0.24 +0.6
787,573 - Psyr_0684 0.38 -0.6
787,597 - Psyr_0684 0.44 -0.4
787,620 + Psyr_0684 0.49 -1.1
787,620 + Psyr_0684 0.49 -0.8
787,620 + Psyr_0684 0.49 -0.4
787,621 - Psyr_0684 0.50 -0.1
787,621 - Psyr_0684 0.50 -0.2
787,621 - Psyr_0684 0.50 +0.7
787,621 - Psyr_0684 0.50 -0.6
787,621 - Psyr_0684 0.50 +0.2
787,691 - Psyr_0684 0.66 -0.7
787,691 - Psyr_0684 0.66 +1.7
787,694 + Psyr_0684 0.67 +0.0
787,695 - Psyr_0684 0.67 -1.8
787,725 - Psyr_0684 0.75 +0.9
787,727 + Psyr_0684 0.75 -1.6
787,727 + Psyr_0684 0.75 -0.6
787,727 + Psyr_0684 0.75 -0.7
787,727 + Psyr_0684 0.75 -0.3
787,728 - Psyr_0684 0.75 -0.3
787,728 - Psyr_0684 0.75 -1.5
787,728 - Psyr_0684 0.75 -1.0
787,728 - Psyr_0684 0.75 +1.0
787,728 - Psyr_0684 0.75 -0.0
787,728 - Psyr_0684 0.75 +0.1
787,728 - Psyr_0684 0.75 +0.3
787,750 + Psyr_0684 0.81 -0.2
787,750 + Psyr_0684 0.81 +1.2
787,751 - Psyr_0684 0.81 +0.8
787,751 - Psyr_0684 0.81 -0.4
787,751 - Psyr_0684 0.81 +1.2
787,751 - Psyr_0684 0.81 -0.7
787,751 - Psyr_0684 0.81 +0.4
787,754 + Psyr_0684 0.82 +0.9
787,754 + Psyr_0684 0.82 +0.5
787,754 + Psyr_0684 0.82 -1.2
787,754 + Psyr_0684 0.82 +0.4
787,755 - Psyr_0684 0.82 -1.0
787,786 + Psyr_0684 0.89 +0.8
787,786 + Psyr_0684 0.89 +0.5
787,786 + Psyr_0684 0.89 +3.0
787,786 + Psyr_0684 0.89 +1.3
787,787 - Psyr_0684 0.89 -0.8
787,787 - Psyr_0684 0.89 -2.8
787,787 - Psyr_0684 0.89 +0.9
787,787 - Psyr_0684 0.89 +2.2
787,789 - -0.8
787,789 - +0.6
787,806 - -2.6
787,860 - -1.2
787,860 - -0.4
787,861 + +0.6
787,861 + -2.0
787,861 + +1.2
787,861 + +0.8
787,861 + +2.7
787,861 + +1.6
787,862 - -0.4
787,862 - -0.6
787,862 - +0.9
787,862 - +1.3
787,862 - +1.3
787,862 - +1.0
787,862 - +0.0
787,862 - +0.2
787,862 - +0.4
787,865 + +0.1
787,865 + -0.3
787,926 + +1.2
787,927 - +0.9
788,036 + Psyr_0685 0.19 -0.1
788,036 + Psyr_0685 0.19 -1.3
788,037 - Psyr_0685 0.19 -0.1
788,037 - Psyr_0685 0.19 +1.3
788,037 - Psyr_0685 0.19 +0.4
788,107 + Psyr_0685 0.25 +0.8
788,108 - Psyr_0685 0.26 -0.2
788,125 - Psyr_0685 0.27 +1.2
788,149 + Psyr_0685 0.29 -1.4
788,150 - Psyr_0685 0.29 -1.2
788,150 - Psyr_0685 0.29 +0.7
788,155 - Psyr_0685 0.30 -1.3
788,155 - Psyr_0685 0.30 -0.6
788,155 - Psyr_0685 0.30 +0.2
788,160 + Psyr_0685 0.30 -0.8
788,161 - Psyr_0685 0.30 -1.3
788,161 - Psyr_0685 0.30 -1.2
788,161 - Psyr_0685 0.30 -2.1
788,210 + Psyr_0685 0.34 +0.6
788,294 - Psyr_0685 0.42 +0.5

Or see this region's nucleotide sequence