Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0602

Experiment: apoplastic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0601 and Psyr_0602 are separated by 720 nucleotidesPsyr_0602 and Psyr_0603 are separated by 35 nucleotides Psyr_0601: Psyr_0601 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 690,101 to 690,817 _0601 Psyr_0602: Psyr_0602 - Short-chain dehydrogenase/reductase SDR, at 691,538 to 692,302 _0602 Psyr_0603: Psyr_0603 - N-acylglucosamine 2-epimerase, at 692,338 to 693,552 _0603 Position (kb) 691 692 693Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 690.669 kb on + strand, within Psyr_0601at 690.669 kb on + strand, within Psyr_0601at 690.670 kb on - strand, within Psyr_0601at 690.670 kb on - strand, within Psyr_0601at 690.670 kb on - strand, within Psyr_0601at 690.722 kb on + strand, within Psyr_0601at 690.722 kb on + strand, within Psyr_0601at 690.722 kb on + strand, within Psyr_0601at 690.722 kb on + strand, within Psyr_0601at 690.723 kb on - strand, within Psyr_0601at 690.723 kb on - strand, within Psyr_0601at 690.723 kb on - strand, within Psyr_0601at 690.778 kb on - strandat 690.778 kb on - strandat 690.789 kb on + strandat 690.918 kb on - strandat 690.929 kb on - strandat 690.999 kb on + strandat 690.999 kb on + strandat 690.999 kb on + strandat 691.011 kb on - strandat 691.014 kb on + strandat 691.015 kb on - strandat 691.164 kb on + strandat 691.165 kb on - strandat 691.165 kb on - strandat 691.433 kb on + strandat 691.434 kb on - strandat 691.434 kb on - strandat 691.494 kb on + strandat 691.494 kb on + strandat 691.494 kb on + strandat 691.495 kb on - strandat 691.495 kb on - strandat 691.551 kb on + strandat 691.551 kb on + strandat 691.551 kb on + strandat 691.552 kb on - strandat 691.552 kb on - strandat 691.552 kb on - strandat 691.552 kb on - strandat 691.552 kb on - strandat 691.552 kb on - strandat 691.552 kb on - strandat 691.552 kb on - strandat 691.696 kb on + strand, within Psyr_0602at 691.696 kb on + strand, within Psyr_0602at 691.713 kb on + strand, within Psyr_0602at 691.713 kb on + strand, within Psyr_0602at 691.713 kb on + strand, within Psyr_0602at 691.713 kb on + strand, within Psyr_0602at 691.713 kb on + strand, within Psyr_0602at 691.713 kb on + strand, within Psyr_0602at 691.714 kb on - strand, within Psyr_0602at 691.714 kb on - strand, within Psyr_0602at 691.714 kb on - strand, within Psyr_0602at 691.714 kb on - strand, within Psyr_0602at 691.714 kb on - strand, within Psyr_0602at 691.714 kb on - strand, within Psyr_0602at 691.883 kb on + strand, within Psyr_0602at 691.883 kb on + strand, within Psyr_0602at 691.883 kb on + strand, within Psyr_0602at 691.883 kb on + strand, within Psyr_0602at 691.883 kb on + strand, within Psyr_0602at 691.884 kb on - strand, within Psyr_0602at 691.884 kb on - strandat 691.967 kb on + strand, within Psyr_0602at 691.974 kb on - strand, within Psyr_0602at 691.992 kb on - strand, within Psyr_0602at 692.138 kb on + strand, within Psyr_0602at 692.138 kb on + strand, within Psyr_0602at 692.138 kb on + strand, within Psyr_0602at 692.139 kb on - strand, within Psyr_0602at 692.139 kb on - strand, within Psyr_0602at 692.139 kb on - strand, within Psyr_0602at 692.139 kb on - strand, within Psyr_0602at 692.150 kb on + strand, within Psyr_0602at 692.150 kb on + strand, within Psyr_0602at 692.150 kb on + strand, within Psyr_0602at 692.151 kb on - strand, within Psyr_0602at 692.151 kb on - strand, within Psyr_0602at 692.151 kb on - strand, within Psyr_0602at 692.411 kb on + strandat 692.412 kb on - strandat 692.412 kb on - strandat 692.412 kb on - strandat 692.412 kb on - strandat 692.412 kb on - strandat 692.412 kb on - strandat 692.412 kb on - strandat 692.586 kb on - strand, within Psyr_0603at 692.586 kb on - strand, within Psyr_0603at 692.604 kb on + strand, within Psyr_0603at 692.605 kb on - strand, within Psyr_0603at 692.693 kb on + strand, within Psyr_0603at 692.871 kb on + strand, within Psyr_0603at 693.015 kb on - strand, within Psyr_0603at 693.107 kb on + strand, within Psyr_0603at 693.126 kb on + strand, within Psyr_0603at 693.143 kb on + strand, within Psyr_0603at 693.144 kb on - strand, within Psyr_0603at 693.191 kb on + strand, within Psyr_0603at 693.191 kb on + strand, within Psyr_0603at 693.192 kb on - strand, within Psyr_0603

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Lima bean
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690,669 + Psyr_0601 0.79 -1.3
690,669 + Psyr_0601 0.79 +0.2
690,670 - Psyr_0601 0.79 -0.4
690,670 - Psyr_0601 0.79 -2.8
690,670 - Psyr_0601 0.79 +0.4
690,722 + Psyr_0601 0.87 -1.1
690,722 + Psyr_0601 0.87 -0.2
690,722 + Psyr_0601 0.87 +0.2
690,722 + Psyr_0601 0.87 -0.6
690,723 - Psyr_0601 0.87 +2.0
690,723 - Psyr_0601 0.87 -0.8
690,723 - Psyr_0601 0.87 +0.8
690,778 - -0.3
690,778 - +0.2
690,789 + +0.4
690,918 - +0.1
690,929 - -0.5
690,999 + -0.2
690,999 + +0.5
690,999 + -1.2
691,011 - +0.2
691,014 + +1.0
691,015 - -0.0
691,164 + -0.5
691,165 - -0.1
691,165 - -0.0
691,433 + -1.6
691,434 - +0.6
691,434 - +0.9
691,494 + -1.0
691,494 + -0.4
691,494 + -0.8
691,495 - -0.4
691,495 - -0.6
691,551 + +1.0
691,551 + +0.6
691,551 + -0.3
691,552 - -2.5
691,552 - -0.3
691,552 - +0.2
691,552 - -1.4
691,552 - +0.3
691,552 - -1.2
691,552 - +0.4
691,552 - -0.5
691,696 + Psyr_0602 0.21 +0.2
691,696 + Psyr_0602 0.21 -0.8
691,713 + Psyr_0602 0.23 +0.9
691,713 + Psyr_0602 0.23 +1.1
691,713 + Psyr_0602 0.23 +0.6
691,713 + Psyr_0602 0.23 +0.9
691,713 + Psyr_0602 0.23 -0.3
691,713 + Psyr_0602 0.23 +1.3
691,714 - Psyr_0602 0.23 -0.3
691,714 - Psyr_0602 0.23 +0.2
691,714 - Psyr_0602 0.23 +0.4
691,714 - Psyr_0602 0.23 +1.7
691,714 - Psyr_0602 0.23 -0.3
691,714 - Psyr_0602 0.23 -0.4
691,883 + Psyr_0602 0.45 -1.4
691,883 + Psyr_0602 0.45 -2.8
691,883 + Psyr_0602 0.45 -0.9
691,883 + Psyr_0602 0.45 -0.8
691,883 + Psyr_0602 0.45 -2.0
691,884 - Psyr_0602 0.45 -0.7
691,884 - -0.4
691,967 + Psyr_0602 0.56 +0.2
691,974 - Psyr_0602 0.57 -0.4
691,992 - Psyr_0602 0.59 +0.2
692,138 + Psyr_0602 0.78 -0.1
692,138 + Psyr_0602 0.78 -0.8
692,138 + Psyr_0602 0.78 +0.1
692,139 - Psyr_0602 0.79 -2.5
692,139 - Psyr_0602 0.79 -0.5
692,139 - Psyr_0602 0.79 -1.8
692,139 - Psyr_0602 0.79 -1.2
692,150 + Psyr_0602 0.80 +0.1
692,150 + Psyr_0602 0.80 -0.5
692,150 + Psyr_0602 0.80 -1.6
692,151 - Psyr_0602 0.80 -0.3
692,151 - Psyr_0602 0.80 -2.0
692,151 - Psyr_0602 0.80 +0.2
692,411 + -0.2
692,412 - +0.3
692,412 - +0.9
692,412 - -1.1
692,412 - -0.4
692,412 - +0.6
692,412 - -0.1
692,412 - +0.3
692,586 - Psyr_0603 0.20 -1.0
692,586 - Psyr_0603 0.20 -0.9
692,604 + Psyr_0603 0.22 +0.3
692,605 - Psyr_0603 0.22 +0.4
692,693 + Psyr_0603 0.29 -2.2
692,871 + Psyr_0603 0.44 +0.8
693,015 - Psyr_0603 0.56 +1.4
693,107 + Psyr_0603 0.63 -1.7
693,126 + Psyr_0603 0.65 +0.7
693,143 + Psyr_0603 0.66 +1.2
693,144 - Psyr_0603 0.66 +0.2
693,191 + Psyr_0603 0.70 +0.3
693,191 + Psyr_0603 0.70 -1.5
693,192 - Psyr_0603 0.70 +0.0

Or see this region's nucleotide sequence