Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0508 and Psyr_0509 are separated by 296 nucleotides Psyr_0509 and Psyr_0510 are separated by 32 nucleotides Psyr_0510 and Psyr_0511 are separated by 26 nucleotides Psyr_0511 and Psyr_0512 are separated by 7 nucleotides
Psyr_0508: Psyr_0508 - lyase, putative, at 563,658 to 564,329
_0508
Psyr_0509: Psyr_0509 - PAS:GGDEF, at 564,626 to 566,785
_0509
Psyr_0510: Psyr_0510 - conserved hypothetical protein, at 566,818 to 567,342
_0510
Psyr_0511: Psyr_0511 - conserved hypothetical protein, at 567,369 to 567,665
_0511
Psyr_0512: Psyr_0512 - GCN5-related N-acetyltransferase, at 567,673 to 568,131
_0512
Position (kb) 564
565
566
567 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 563.633 kb on - strand at 563.633 kb on - strand at 563.689 kb on + strand at 563.689 kb on + strand at 563.689 kb on + strand at 563.690 kb on - strand at 563.690 kb on - strand at 563.690 kb on - strand at 563.740 kb on + strand, within Psyr_0508 at 563.740 kb on + strand, within Psyr_0508 at 563.740 kb on + strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.758 kb on + strand, within Psyr_0508 at 563.759 kb on - strand, within Psyr_0508 at 563.759 kb on - strand, within Psyr_0508 at 563.759 kb on - strand, within Psyr_0508 at 563.857 kb on + strand, within Psyr_0508 at 563.857 kb on + strand, within Psyr_0508 at 563.857 kb on + strand, within Psyr_0508 at 563.857 kb on + strand, within Psyr_0508 at 563.858 kb on - strand, within Psyr_0508 at 563.858 kb on - strand, within Psyr_0508 at 563.858 kb on - strand, within Psyr_0508 at 563.858 kb on - strand, within Psyr_0508 at 563.890 kb on - strand, within Psyr_0508 at 563.890 kb on - strand, within Psyr_0508 at 563.900 kb on - strand, within Psyr_0508 at 563.974 kb on + strand, within Psyr_0508 at 563.975 kb on - strand, within Psyr_0508 at 563.975 kb on - strand, within Psyr_0508 at 563.975 kb on - strand, within Psyr_0508 at 563.975 kb on - strand, within Psyr_0508 at 564.013 kb on + strand, within Psyr_0508 at 564.014 kb on - strand, within Psyr_0508 at 564.014 kb on - strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.022 kb on - strand, within Psyr_0508 at 564.022 kb on - strand, within Psyr_0508 at 564.022 kb on - strand, within Psyr_0508 at 564.054 kb on + strand, within Psyr_0508 at 564.054 kb on + strand, within Psyr_0508 at 564.055 kb on - strand, within Psyr_0508 at 564.055 kb on - strand, within Psyr_0508 at 564.055 kb on - strand, within Psyr_0508 at 564.113 kb on + strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.160 kb on + strand, within Psyr_0508 at 564.160 kb on + strand, within Psyr_0508 at 564.160 kb on + strand, within Psyr_0508 at 564.179 kb on + strand, within Psyr_0508 at 564.232 kb on + strand, within Psyr_0508 at 564.233 kb on - strand, within Psyr_0508 at 564.233 kb on - strand, within Psyr_0508 at 564.233 kb on - strand, within Psyr_0508 at 564.236 kb on + strand, within Psyr_0508 at 564.236 kb on + strand, within Psyr_0508 at 564.245 kb on - strand, within Psyr_0508 at 564.252 kb on + strand, within Psyr_0508 at 564.252 kb on + strand, within Psyr_0508 at 564.253 kb on - strand, within Psyr_0508 at 564.253 kb on - strand, within Psyr_0508 at 564.253 kb on - strand, within Psyr_0508 at 564.255 kb on + strand, within Psyr_0508 at 564.255 kb on + strand, within Psyr_0508 at 564.256 kb on - strand, within Psyr_0508 at 564.256 kb on - strand, within Psyr_0508 at 564.256 kb on - strand, within Psyr_0508 at 564.324 kb on + strand at 564.356 kb on + strand at 564.356 kb on + strand at 564.356 kb on + strand at 564.357 kb on - strand at 564.402 kb on + strand at 564.402 kb on + strand at 564.403 kb on - strand at 564.597 kb on + strand at 564.597 kb on + strand at 564.597 kb on + strand at 564.597 kb on + strand at 564.598 kb on - strand at 564.598 kb on - strand at 564.690 kb on + strand at 564.691 kb on - strand at 564.699 kb on + strand at 564.783 kb on + strand at 564.784 kb on - strand at 564.798 kb on + strand at 564.799 kb on - strand at 564.963 kb on - strand, within Psyr_0509 at 564.983 kb on + strand, within Psyr_0509 at 564.983 kb on + strand, within Psyr_0509 at 564.983 kb on + strand, within Psyr_0509 at 564.983 kb on + strand, within Psyr_0509 at 564.983 kb on + strand, within Psyr_0509 at 565.197 kb on + strand, within Psyr_0509 at 565.197 kb on + strand, within Psyr_0509 at 565.198 kb on - strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.245 kb on - strand, within Psyr_0509 at 565.245 kb on - strand, within Psyr_0509 at 565.245 kb on - strand, within Psyr_0509 at 565.245 kb on - strand, within Psyr_0509 at 565.245 kb on - strand, within Psyr_0509 at 565.245 kb on - strand, within Psyr_0509 at 565.263 kb on + strand, within Psyr_0509 at 565.263 kb on + strand, within Psyr_0509 at 565.263 kb on + strand, within Psyr_0509 at 565.264 kb on - strand, within Psyr_0509 at 565.289 kb on + strand, within Psyr_0509 at 565.290 kb on - strand, within Psyr_0509 at 565.317 kb on - strand, within Psyr_0509 at 565.317 kb on - strand, within Psyr_0509 at 565.430 kb on - strand, within Psyr_0509 at 565.451 kb on + strand, within Psyr_0509 at 565.517 kb on + strand, within Psyr_0509 at 565.562 kb on - strand, within Psyr_0509 at 565.562 kb on - strand, within Psyr_0509 at 565.565 kb on + strand, within Psyr_0509 at 565.565 kb on + strand, within Psyr_0509 at 565.566 kb on - strand, within Psyr_0509 at 565.566 kb on - strand, within Psyr_0509 at 565.566 kb on - strand, within Psyr_0509 at 565.566 kb on - strand, within Psyr_0509 at 565.644 kb on + strand, within Psyr_0509 at 565.644 kb on + strand, within Psyr_0509 at 565.645 kb on - strand, within Psyr_0509 at 565.645 kb on - strand, within Psyr_0509 at 565.688 kb on + strand, within Psyr_0509 at 565.689 kb on - strand, within Psyr_0509 at 565.916 kb on + strand, within Psyr_0509 at 565.916 kb on + strand, within Psyr_0509 at 565.916 kb on + strand, within Psyr_0509 at 565.916 kb on + strand, within Psyr_0509 at 565.916 kb on + strand, within Psyr_0509 at 565.916 kb on + strand, within Psyr_0509 at 565.916 kb on + strand, within Psyr_0509 at 565.917 kb on - strand, within Psyr_0509 at 565.917 kb on - strand, within Psyr_0509 at 565.917 kb on - strand, within Psyr_0509 at 565.917 kb on - strand, within Psyr_0509 at 565.917 kb on - strand, within Psyr_0509 at 565.917 kb on - strand, within Psyr_0509 at 565.955 kb on + strand, within Psyr_0509 at 565.956 kb on - strand, within Psyr_0509 at 566.048 kb on + strand, within Psyr_0509 at 566.048 kb on + strand, within Psyr_0509 at 566.048 kb on + strand, within Psyr_0509 at 566.049 kb on - strand, within Psyr_0509 at 566.049 kb on - strand, within Psyr_0509 at 566.049 kb on - strand, within Psyr_0509 at 566.358 kb on + strand, within Psyr_0509 at 566.359 kb on - strand, within Psyr_0509 at 566.359 kb on - strand, within Psyr_0509 at 566.545 kb on + strand, within Psyr_0509 at 566.584 kb on + strand at 566.585 kb on - strand at 566.783 kb on + strand at 566.783 kb on + strand at 566.783 kb on + strand at 566.784 kb on - strand at 566.784 kb on - strand at 566.784 kb on - strand at 566.784 kb on - strand at 566.849 kb on - strand at 566.921 kb on - strand, within Psyr_0510 at 566.974 kb on + strand, within Psyr_0510 at 567.239 kb on - strand, within Psyr_0510 at 567.239 kb on - strand, within Psyr_0510 at 567.239 kb on - strand, within Psyr_0510 at 567.239 kb on - strand, within Psyr_0510 at 567.299 kb on - strand at 567.308 kb on - strand at 567.399 kb on + strand, within Psyr_0511 at 567.411 kb on + strand, within Psyr_0511 at 567.411 kb on + strand, within Psyr_0511 at 567.411 kb on + strand, within Psyr_0511 at 567.412 kb on - strand, within Psyr_0511 at 567.420 kb on + strand, within Psyr_0511 at 567.421 kb on - strand, within Psyr_0511 at 567.503 kb on + strand, within Psyr_0511 at 567.504 kb on - strand, within Psyr_0511 at 567.658 kb on - strand at 567.758 kb on + strand, within Psyr_0512 at 567.761 kb on + strand, within Psyr_0512 at 567.761 kb on + strand, within Psyr_0512 at 567.762 kb on - strand, within Psyr_0512
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 563,633 - +0.5 563,633 - +0.2 563,689 + -2.2 563,689 + -2.6 563,689 + -1.9 563,690 - -1.7 563,690 - -0.0 563,690 - -2.3 563,740 + Psyr_0508 0.12 -0.5 563,740 + Psyr_0508 0.12 -0.2 563,740 + Psyr_0508 0.12 -0.7 563,741 - Psyr_0508 0.12 -0.2 563,741 - Psyr_0508 0.12 -1.2 563,741 - Psyr_0508 0.12 -1.3 563,741 - Psyr_0508 0.12 +0.0 563,741 - Psyr_0508 0.12 +0.2 563,741 - Psyr_0508 0.12 -0.8 563,741 - Psyr_0508 0.12 -1.3 563,758 + Psyr_0508 0.15 -1.4 563,759 - Psyr_0508 0.15 +0.7 563,759 - Psyr_0508 0.15 +0.1 563,759 - Psyr_0508 0.15 +0.4 563,857 + Psyr_0508 0.30 -3.1 563,857 + Psyr_0508 0.30 -1.4 563,857 + Psyr_0508 0.30 -0.8 563,857 + Psyr_0508 0.30 -0.6 563,858 - Psyr_0508 0.30 -1.3 563,858 - Psyr_0508 0.30 -1.7 563,858 - Psyr_0508 0.30 -0.3 563,858 - Psyr_0508 0.30 -1.0 563,890 - Psyr_0508 0.35 -1.9 563,890 - Psyr_0508 0.35 -1.3 563,900 - Psyr_0508 0.36 -1.4 563,974 + Psyr_0508 0.47 -1.0 563,975 - Psyr_0508 0.47 -2.0 563,975 - Psyr_0508 0.47 -2.3 563,975 - Psyr_0508 0.47 +1.7 563,975 - Psyr_0508 0.47 +0.4 564,013 + Psyr_0508 0.53 -1.4 564,014 - Psyr_0508 0.53 -0.3 564,014 - Psyr_0508 0.53 -0.6 564,021 + Psyr_0508 0.54 -0.4 564,021 + Psyr_0508 0.54 -1.2 564,021 + Psyr_0508 0.54 -1.6 564,021 + Psyr_0508 0.54 -2.5 564,021 + Psyr_0508 0.54 -2.9 564,021 + Psyr_0508 0.54 -1.5 564,021 + Psyr_0508 0.54 -1.5 564,021 + Psyr_0508 0.54 -1.1 564,022 - Psyr_0508 0.54 -2.5 564,022 - Psyr_0508 0.54 -1.2 564,022 - Psyr_0508 0.54 -1.5 564,054 + Psyr_0508 0.59 -0.8 564,054 + Psyr_0508 0.59 -2.2 564,055 - Psyr_0508 0.59 +0.2 564,055 - Psyr_0508 0.59 -0.6 564,055 - Psyr_0508 0.59 +0.9 564,113 + Psyr_0508 0.68 -2.2 564,114 - Psyr_0508 0.68 -2.7 564,114 - Psyr_0508 0.68 -2.2 564,114 - Psyr_0508 0.68 -3.4 564,114 - Psyr_0508 0.68 +1.3 564,114 - Psyr_0508 0.68 +0.4 564,114 - Psyr_0508 0.68 +0.8 564,114 - Psyr_0508 0.68 -0.8 564,114 - Psyr_0508 0.68 -2.8 564,160 + Psyr_0508 0.75 -3.0 564,160 + Psyr_0508 0.75 +0.2 564,160 + Psyr_0508 0.75 -1.3 564,179 + Psyr_0508 0.78 -2.5 564,232 + Psyr_0508 0.85 -3.4 564,233 - Psyr_0508 0.86 -2.3 564,233 - Psyr_0508 0.86 -0.1 564,233 - Psyr_0508 0.86 -2.7 564,236 + Psyr_0508 0.86 -3.2 564,236 + Psyr_0508 0.86 -2.5 564,245 - Psyr_0508 0.87 +0.4 564,252 + Psyr_0508 0.88 -2.0 564,252 + Psyr_0508 0.88 -1.2 564,253 - Psyr_0508 0.89 -1.6 564,253 - Psyr_0508 0.89 -0.4 564,253 - Psyr_0508 0.89 +0.9 564,255 + Psyr_0508 0.89 -2.7 564,255 + Psyr_0508 0.89 -2.4 564,256 - Psyr_0508 0.89 -1.8 564,256 - Psyr_0508 0.89 -1.4 564,256 - Psyr_0508 0.89 -0.3 564,324 + -1.7 564,356 + -1.2 564,356 + -1.8 564,356 + -3.4 564,357 - -0.4 564,402 + -2.4 564,402 + -1.5 564,403 - +1.2 564,597 + -1.1 564,597 + -1.2 564,597 + -2.1 564,597 + -1.6 564,598 - -0.1 564,598 - +1.9 564,690 + -0.8 564,691 - +1.2 564,699 + +0.8 564,783 + -1.0 564,784 - -1.2 564,798 + -0.4 564,799 - -1.2 564,963 - Psyr_0509 0.16 +2.7 564,983 + Psyr_0509 0.17 +1.0 564,983 + Psyr_0509 0.17 +0.5 564,983 + Psyr_0509 0.17 +0.4 564,983 + Psyr_0509 0.17 -0.4 564,983 + Psyr_0509 0.17 -0.2 565,197 + Psyr_0509 0.26 +1.1 565,197 + Psyr_0509 0.26 +0.2 565,198 - Psyr_0509 0.26 +2.1 565,244 + Psyr_0509 0.29 +0.8 565,244 + Psyr_0509 0.29 -0.8 565,244 + Psyr_0509 0.29 +0.2 565,244 + Psyr_0509 0.29 +1.0 565,244 + Psyr_0509 0.29 -0.3 565,244 + Psyr_0509 0.29 +1.2 565,244 + Psyr_0509 0.29 +0.7 565,244 + Psyr_0509 0.29 +0.8 565,244 + Psyr_0509 0.29 -0.3 565,244 + Psyr_0509 0.29 -0.4 565,244 + Psyr_0509 0.29 -0.5 565,245 - Psyr_0509 0.29 +1.4 565,245 - Psyr_0509 0.29 +1.2 565,245 - Psyr_0509 0.29 -1.2 565,245 - Psyr_0509 0.29 -0.4 565,245 - Psyr_0509 0.29 -0.4 565,245 - Psyr_0509 0.29 -0.0 565,263 + Psyr_0509 0.29 +1.0 565,263 + Psyr_0509 0.29 -0.6 565,263 + Psyr_0509 0.29 +0.3 565,264 - Psyr_0509 0.30 +1.2 565,289 + Psyr_0509 0.31 +0.0 565,290 - Psyr_0509 0.31 +1.2 565,317 - Psyr_0509 0.32 -0.8 565,317 - Psyr_0509 0.32 +0.8 565,430 - Psyr_0509 0.37 +0.5 565,451 + Psyr_0509 0.38 +2.0 565,517 + Psyr_0509 0.41 -0.4 565,562 - Psyr_0509 0.43 +0.4 565,562 - Psyr_0509 0.43 +0.2 565,565 + Psyr_0509 0.43 +0.6 565,565 + Psyr_0509 0.43 -0.8 565,566 - Psyr_0509 0.44 -0.2 565,566 - Psyr_0509 0.44 -1.0 565,566 - Psyr_0509 0.44 -0.2 565,566 - Psyr_0509 0.44 +0.2 565,644 + Psyr_0509 0.47 -0.2 565,644 + Psyr_0509 0.47 +0.0 565,645 - Psyr_0509 0.47 -0.3 565,645 - Psyr_0509 0.47 +1.0 565,688 + Psyr_0509 0.49 +1.6 565,689 - Psyr_0509 0.49 -0.4 565,916 + Psyr_0509 0.60 -0.8 565,916 + Psyr_0509 0.60 -1.7 565,916 + Psyr_0509 0.60 +0.6 565,916 + Psyr_0509 0.60 -0.3 565,916 + Psyr_0509 0.60 -0.7 565,916 + Psyr_0509 0.60 +0.7 565,916 + Psyr_0509 0.60 -1.0 565,917 - Psyr_0509 0.60 +1.9 565,917 - Psyr_0509 0.60 +0.6 565,917 - Psyr_0509 0.60 +1.1 565,917 - Psyr_0509 0.60 +2.1 565,917 - Psyr_0509 0.60 +1.4 565,917 - Psyr_0509 0.60 +0.7 565,955 + Psyr_0509 0.62 +1.2 565,956 - Psyr_0509 0.62 +1.0 566,048 + Psyr_0509 0.66 -0.6 566,048 + Psyr_0509 0.66 +1.9 566,048 + Psyr_0509 0.66 -1.4 566,049 - Psyr_0509 0.66 -3.2 566,049 - Psyr_0509 0.66 -0.1 566,049 - Psyr_0509 0.66 -0.8 566,358 + Psyr_0509 0.80 -1.2 566,359 - Psyr_0509 0.80 -1.5 566,359 - Psyr_0509 0.80 -1.0 566,545 + Psyr_0509 0.89 +0.1 566,584 + +0.9 566,585 - -2.5 566,783 + -0.7 566,783 + -0.9 566,783 + +0.8 566,784 - -1.3 566,784 - -0.7 566,784 - +1.7 566,784 - +0.1 566,849 - -0.3 566,921 - Psyr_0510 0.20 +1.0 566,974 + Psyr_0510 0.30 -1.2 567,239 - Psyr_0510 0.80 +1.5 567,239 - Psyr_0510 0.80 +0.4 567,239 - Psyr_0510 0.80 +0.9 567,239 - Psyr_0510 0.80 -0.2 567,299 - +0.8 567,308 - +0.2 567,399 + Psyr_0511 0.10 -0.5 567,411 + Psyr_0511 0.14 -0.4 567,411 + Psyr_0511 0.14 +0.2 567,411 + Psyr_0511 0.14 -1.3 567,412 - Psyr_0511 0.14 -0.1 567,420 + Psyr_0511 0.17 -0.2 567,421 - Psyr_0511 0.18 +1.1 567,503 + Psyr_0511 0.45 +0.6 567,504 - Psyr_0511 0.45 -0.0 567,658 - -0.6 567,758 + Psyr_0512 0.19 -0.3 567,761 + Psyr_0512 0.19 +0.2 567,761 + Psyr_0512 0.19 -0.1 567,762 - Psyr_0512 0.19 -1.0
Or see this region's nucleotide sequence