Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0504 and Psyr_0505 are separated by 22 nucleotides Psyr_0505 and Psyr_0506 are separated by 270 nucleotides
Psyr_0504: Psyr_0504 - conserved domain protein, at 552,941 to 555,589
_0504
Psyr_0505: Psyr_0505 - Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region, at 555,612 to 557,414
_0505
Psyr_0506: Psyr_0506 - L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase, at 557,685 to 561,587
_0506
Position (kb) 555
556
557
558 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 554.626 kb on + strand, within Psyr_0504 at 554.626 kb on + strand, within Psyr_0504 at 554.626 kb on + strand, within Psyr_0504 at 554.627 kb on - strand, within Psyr_0504 at 554.688 kb on + strand, within Psyr_0504 at 554.689 kb on - strand, within Psyr_0504 at 554.689 kb on - strand, within Psyr_0504 at 554.689 kb on - strand, within Psyr_0504 at 554.689 kb on - strand, within Psyr_0504 at 554.689 kb on - strand, within Psyr_0504 at 554.689 kb on - strand, within Psyr_0504 at 554.712 kb on - strand, within Psyr_0504 at 554.847 kb on + strand, within Psyr_0504 at 554.847 kb on + strand, within Psyr_0504 at 554.847 kb on + strand, within Psyr_0504 at 554.848 kb on - strand, within Psyr_0504 at 554.848 kb on - strand, within Psyr_0504 at 554.848 kb on - strand, within Psyr_0504 at 554.849 kb on + strand, within Psyr_0504 at 554.849 kb on + strand, within Psyr_0504 at 554.849 kb on + strand, within Psyr_0504 at 554.849 kb on + strand, within Psyr_0504 at 554.849 kb on + strand, within Psyr_0504 at 554.849 kb on + strand, within Psyr_0504 at 554.849 kb on + strand, within Psyr_0504 at 554.850 kb on - strand, within Psyr_0504 at 554.850 kb on - strand, within Psyr_0504 at 554.850 kb on - strand, within Psyr_0504 at 554.850 kb on - strand, within Psyr_0504 at 554.850 kb on - strand, within Psyr_0504 at 554.850 kb on - strand, within Psyr_0504 at 554.850 kb on - strand, within Psyr_0504 at 554.904 kb on - strand, within Psyr_0504 at 554.904 kb on - strand, within Psyr_0504 at 554.907 kb on - strand, within Psyr_0504 at 554.907 kb on - strand, within Psyr_0504 at 554.927 kb on + strand, within Psyr_0504 at 554.927 kb on + strand, within Psyr_0504 at 554.927 kb on + strand, within Psyr_0504 at 554.927 kb on + strand, within Psyr_0504 at 554.927 kb on + strand, within Psyr_0504 at 554.927 kb on + strand, within Psyr_0504 at 554.927 kb on + strand, within Psyr_0504 at 554.927 kb on + strand, within Psyr_0504 at 554.928 kb on - strand, within Psyr_0504 at 554.928 kb on - strand, within Psyr_0504 at 554.928 kb on - strand, within Psyr_0504 at 554.928 kb on - strand, within Psyr_0504 at 554.928 kb on - strand, within Psyr_0504 at 554.928 kb on - strand, within Psyr_0504 at 555.038 kb on + strand, within Psyr_0504 at 555.059 kb on + strand, within Psyr_0504 at 555.060 kb on - strand, within Psyr_0504 at 555.060 kb on - strand, within Psyr_0504 at 555.173 kb on + strand, within Psyr_0504 at 555.174 kb on - strand, within Psyr_0504 at 555.174 kb on - strand, within Psyr_0504 at 555.174 kb on - strand, within Psyr_0504 at 555.174 kb on - strand, within Psyr_0504 at 555.359 kb on + strand at 555.360 kb on - strand at 555.360 kb on - strand at 555.360 kb on - strand at 555.402 kb on - strand at 555.462 kb on - strand at 555.501 kb on - strand at 555.508 kb on + strand at 555.509 kb on - strand at 555.509 kb on - strand at 555.736 kb on + strand at 555.736 kb on + strand at 555.737 kb on - strand at 555.737 kb on - strand at 555.841 kb on + strand, within Psyr_0505 at 555.841 kb on + strand, within Psyr_0505 at 555.842 kb on - strand, within Psyr_0505 at 555.842 kb on - strand, within Psyr_0505 at 556.120 kb on + strand, within Psyr_0505 at 556.120 kb on + strand, within Psyr_0505 at 556.121 kb on - strand, within Psyr_0505 at 556.123 kb on + strand, within Psyr_0505 at 556.124 kb on - strand, within Psyr_0505 at 556.151 kb on - strand, within Psyr_0505 at 556.315 kb on + strand, within Psyr_0505 at 556.315 kb on + strand, within Psyr_0505 at 556.315 kb on + strand, within Psyr_0505 at 556.315 kb on + strand, within Psyr_0505 at 556.316 kb on - strand, within Psyr_0505 at 556.341 kb on + strand, within Psyr_0505 at 556.341 kb on + strand, within Psyr_0505 at 556.341 kb on + strand, within Psyr_0505 at 556.342 kb on - strand, within Psyr_0505 at 556.342 kb on - strand, within Psyr_0505 at 556.342 kb on - strand, within Psyr_0505 at 556.345 kb on + strand, within Psyr_0505 at 556.345 kb on + strand, within Psyr_0505 at 556.346 kb on - strand, within Psyr_0505 at 556.346 kb on - strand, within Psyr_0505 at 556.346 kb on - strand, within Psyr_0505 at 556.346 kb on - strand, within Psyr_0505 at 556.459 kb on + strand, within Psyr_0505 at 556.459 kb on + strand, within Psyr_0505 at 556.486 kb on + strand, within Psyr_0505 at 556.487 kb on - strand, within Psyr_0505 at 556.549 kb on + strand, within Psyr_0505 at 556.550 kb on - strand, within Psyr_0505 at 556.550 kb on - strand, within Psyr_0505 at 556.632 kb on - strand, within Psyr_0505 at 556.830 kb on + strand, within Psyr_0505 at 556.830 kb on + strand, within Psyr_0505 at 556.831 kb on - strand, within Psyr_0505 at 556.831 kb on - strand, within Psyr_0505 at 556.852 kb on + strand, within Psyr_0505 at 556.856 kb on + strand, within Psyr_0505 at 556.856 kb on + strand, within Psyr_0505 at 556.856 kb on + strand, within Psyr_0505 at 556.856 kb on + strand, within Psyr_0505 at 556.856 kb on + strand, within Psyr_0505 at 556.857 kb on - strand, within Psyr_0505 at 556.857 kb on - strand, within Psyr_0505 at 556.857 kb on - strand, within Psyr_0505 at 556.863 kb on - strand, within Psyr_0505 at 557.099 kb on + strand, within Psyr_0505 at 557.100 kb on - strand, within Psyr_0505 at 557.100 kb on - strand, within Psyr_0505 at 557.100 kb on - strand, within Psyr_0505 at 557.100 kb on - strand, within Psyr_0505 at 557.260 kb on + strand at 557.261 kb on - strand at 557.261 kb on - strand at 557.368 kb on + strand at 557.368 kb on + strand at 557.368 kb on + strand at 557.368 kb on + strand at 557.368 kb on + strand at 557.368 kb on + strand at 557.369 kb on - strand at 557.369 kb on - strand at 557.448 kb on + strand at 557.448 kb on + strand at 557.448 kb on + strand at 557.573 kb on - strand at 557.853 kb on + strand at 557.853 kb on + strand at 557.853 kb on + strand at 557.853 kb on + strand at 557.854 kb on - strand at 557.854 kb on - strand at 557.854 kb on - strand at 557.854 kb on - strand at 557.854 kb on - strand at 557.919 kb on + strand at 557.920 kb on - strand at 557.920 kb on - strand at 558.069 kb on + strand at 558.069 kb on + strand at 558.069 kb on + strand at 558.069 kb on + strand at 558.070 kb on - strand at 558.070 kb on - strand at 558.070 kb on - strand at 558.070 kb on - strand at 558.070 kb on - strand at 558.094 kb on + strand, within Psyr_0506 at 558.095 kb on - strand, within Psyr_0506 at 558.095 kb on - strand, within Psyr_0506 at 558.334 kb on + strand, within Psyr_0506 at 558.340 kb on + strand, within Psyr_0506 at 558.341 kb on - strand, within Psyr_0506 at 558.341 kb on - strand, within Psyr_0506
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 554,626 + Psyr_0504 0.64 +0.1 554,626 + Psyr_0504 0.64 -0.0 554,626 + Psyr_0504 0.64 +0.9 554,627 - Psyr_0504 0.64 +0.2 554,688 + Psyr_0504 0.66 +0.1 554,689 - Psyr_0504 0.66 -0.4 554,689 - Psyr_0504 0.66 -0.5 554,689 - Psyr_0504 0.66 -0.1 554,689 - Psyr_0504 0.66 -1.2 554,689 - Psyr_0504 0.66 +0.8 554,689 - Psyr_0504 0.66 -1.2 554,712 - Psyr_0504 0.67 +0.6 554,847 + Psyr_0504 0.72 +0.1 554,847 + Psyr_0504 0.72 +1.3 554,847 + Psyr_0504 0.72 -0.5 554,848 - Psyr_0504 0.72 -0.1 554,848 - Psyr_0504 0.72 +1.2 554,848 - Psyr_0504 0.72 +0.9 554,849 + Psyr_0504 0.72 +1.2 554,849 + Psyr_0504 0.72 +1.2 554,849 + Psyr_0504 0.72 -1.2 554,849 + Psyr_0504 0.72 -0.8 554,849 + Psyr_0504 0.72 -1.6 554,849 + Psyr_0504 0.72 +0.0 554,849 + Psyr_0504 0.72 -0.7 554,850 - Psyr_0504 0.72 +0.4 554,850 - Psyr_0504 0.72 -1.0 554,850 - Psyr_0504 0.72 +0.8 554,850 - Psyr_0504 0.72 -0.5 554,850 - Psyr_0504 0.72 +0.6 554,850 - Psyr_0504 0.72 +0.8 554,850 - Psyr_0504 0.72 -1.0 554,904 - Psyr_0504 0.74 -1.4 554,904 - Psyr_0504 0.74 -0.8 554,907 - Psyr_0504 0.74 -1.4 554,907 - Psyr_0504 0.74 -3.1 554,927 + Psyr_0504 0.75 +0.8 554,927 + Psyr_0504 0.75 -0.4 554,927 + Psyr_0504 0.75 +1.9 554,927 + Psyr_0504 0.75 -0.2 554,927 + Psyr_0504 0.75 -1.6 554,927 + Psyr_0504 0.75 -1.4 554,927 + Psyr_0504 0.75 +2.4 554,927 + Psyr_0504 0.75 +0.6 554,928 - Psyr_0504 0.75 +0.6 554,928 - Psyr_0504 0.75 +2.0 554,928 - Psyr_0504 0.75 -1.0 554,928 - Psyr_0504 0.75 -0.7 554,928 - Psyr_0504 0.75 -0.1 554,928 - Psyr_0504 0.75 +1.7 555,038 + Psyr_0504 0.79 -0.4 555,059 + Psyr_0504 0.80 +1.5 555,060 - Psyr_0504 0.80 +1.7 555,060 - Psyr_0504 0.80 -1.8 555,173 + Psyr_0504 0.84 +0.1 555,174 - Psyr_0504 0.84 +0.2 555,174 - Psyr_0504 0.84 -0.1 555,174 - Psyr_0504 0.84 -0.2 555,174 - Psyr_0504 0.84 -1.2 555,359 + +1.0 555,360 - -0.3 555,360 - +0.1 555,360 - +0.9 555,402 - -1.7 555,462 - -0.5 555,501 - +1.5 555,508 + +0.3 555,509 - -2.0 555,509 - +0.7 555,736 + +1.2 555,736 + -0.5 555,737 - +1.2 555,737 - +0.5 555,841 + Psyr_0505 0.13 -0.1 555,841 + Psyr_0505 0.13 +1.0 555,842 - Psyr_0505 0.13 +0.7 555,842 - Psyr_0505 0.13 -1.8 556,120 + Psyr_0505 0.28 +0.8 556,120 + Psyr_0505 0.28 -0.8 556,121 - Psyr_0505 0.28 -0.0 556,123 + Psyr_0505 0.28 -1.3 556,124 - Psyr_0505 0.28 -0.0 556,151 - Psyr_0505 0.30 -0.0 556,315 + Psyr_0505 0.39 +0.2 556,315 + Psyr_0505 0.39 +0.8 556,315 + Psyr_0505 0.39 -0.3 556,315 + Psyr_0505 0.39 +1.0 556,316 - Psyr_0505 0.39 -0.1 556,341 + Psyr_0505 0.40 +0.8 556,341 + Psyr_0505 0.40 -1.2 556,341 + Psyr_0505 0.40 -0.4 556,342 - Psyr_0505 0.40 +0.2 556,342 - Psyr_0505 0.40 -1.2 556,342 - Psyr_0505 0.40 +0.6 556,345 + Psyr_0505 0.41 -0.5 556,345 + Psyr_0505 0.41 +0.6 556,346 - Psyr_0505 0.41 +1.8 556,346 - Psyr_0505 0.41 -1.3 556,346 - Psyr_0505 0.41 -0.8 556,346 - Psyr_0505 0.41 +1.1 556,459 + Psyr_0505 0.47 -1.4 556,459 + Psyr_0505 0.47 -0.3 556,486 + Psyr_0505 0.48 +1.7 556,487 - Psyr_0505 0.49 -0.9 556,549 + Psyr_0505 0.52 -3.4 556,550 - Psyr_0505 0.52 +3.0 556,550 - Psyr_0505 0.52 -0.4 556,632 - Psyr_0505 0.57 -0.9 556,830 + Psyr_0505 0.68 +2.6 556,830 + Psyr_0505 0.68 +1.8 556,831 - Psyr_0505 0.68 +0.8 556,831 - Psyr_0505 0.68 -1.0 556,852 + Psyr_0505 0.69 +0.2 556,856 + Psyr_0505 0.69 -2.8 556,856 + Psyr_0505 0.69 +2.3 556,856 + Psyr_0505 0.69 +0.7 556,856 + Psyr_0505 0.69 +0.1 556,856 + Psyr_0505 0.69 +1.2 556,857 - Psyr_0505 0.69 +0.6 556,857 - Psyr_0505 0.69 -1.4 556,857 - Psyr_0505 0.69 +0.5 556,863 - Psyr_0505 0.69 +0.7 557,099 + Psyr_0505 0.82 -0.2 557,100 - Psyr_0505 0.83 +1.3 557,100 - Psyr_0505 0.83 -0.5 557,100 - Psyr_0505 0.83 +2.2 557,100 - Psyr_0505 0.83 +0.3 557,260 + +0.8 557,261 - -0.5 557,261 - -1.2 557,368 + +0.7 557,368 + -0.6 557,368 + -0.4 557,368 + +1.8 557,368 + -0.5 557,368 + +0.8 557,369 - +1.0 557,369 - +0.8 557,448 + -1.2 557,448 + +0.5 557,448 + -0.5 557,573 - -1.8 557,853 + +1.2 557,853 + -0.2 557,853 + +1.6 557,853 + -0.5 557,854 - +1.8 557,854 - +1.2 557,854 - -0.5 557,854 - -0.8 557,854 - -1.2 557,919 + -0.1 557,920 - -0.6 557,920 - -1.5 558,069 + +0.8 558,069 + -0.4 558,069 + +0.7 558,069 + +1.2 558,070 - -1.1 558,070 - +1.7 558,070 - -0.2 558,070 - -0.7 558,070 - -2.9 558,094 + Psyr_0506 0.10 -1.2 558,095 - Psyr_0506 0.11 +0.1 558,095 - Psyr_0506 0.11 +0.3 558,334 + Psyr_0506 0.17 -0.8 558,340 + Psyr_0506 0.17 +0.0 558,341 - Psyr_0506 0.17 -2.9 558,341 - Psyr_0506 0.17 +0.6
Or see this region's nucleotide sequence