Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_634

Experiment: Tetracycline 0.0004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_632 and Pf6N2E2_633 are separated by 49 nucleotidesPf6N2E2_633 and Pf6N2E2_634 are separated by 431 nucleotidesPf6N2E2_634 and Pf6N2E2_635 are separated by 179 nucleotidesPf6N2E2_635 and Pf6N2E2_636 are separated by 293 nucleotides Pf6N2E2_632 - hypothetical protein, at 719,743 to 721,851 _632 Pf6N2E2_633 - FIG00954580: hypothetical protein, at 721,901 to 722,254 _633 Pf6N2E2_634 - NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form, at 722,686 to 727,554 _634 Pf6N2E2_635 - hypothetical protein, at 727,734 to 728,138 _635 Pf6N2E2_636 - FIG00954888: hypothetical protein, at 728,432 to 728,725 _636 Position (kb) 722 723 724 725 726 727 728Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 721.730 kb on - strandat 721.772 kb on - strandat 721.775 kb on - strandat 721.913 kb on + strandat 721.913 kb on + strandat 721.913 kb on + strandat 721.913 kb on + strandat 721.913 kb on + strandat 721.914 kb on - strandat 721.914 kb on - strandat 721.914 kb on - strandat 721.915 kb on + strandat 721.915 kb on + strandat 721.915 kb on + strandat 721.915 kb on + strandat 721.915 kb on + strandat 721.915 kb on + strandat 721.915 kb on + strandat 721.915 kb on + strandat 721.915 kb on + strandat 721.916 kb on - strandat 721.916 kb on - strandat 721.916 kb on - strandat 721.917 kb on + strandat 721.917 kb on + strandat 721.917 kb on + strandat 721.917 kb on + strandat 721.917 kb on + strandat 721.917 kb on + strandat 721.917 kb on + strandat 721.917 kb on + strandat 721.917 kb on + strandat 721.917 kb on + strandat 721.917 kb on + strandat 721.918 kb on - strandat 721.918 kb on - strandat 721.918 kb on - strandat 721.918 kb on - strandat 721.918 kb on - strandat 721.918 kb on - strandat 722.415 kb on + strandat 722.415 kb on + strandat 722.416 kb on - strandat 722.529 kb on + strandat 722.530 kb on - strandat 722.530 kb on - strandat 722.530 kb on - strandat 722.923 kb on + strandat 722.923 kb on + strandat 723.445 kb on + strand, within Pf6N2E2_634at 723.445 kb on + strand, within Pf6N2E2_634at 723.524 kb on - strand, within Pf6N2E2_634at 723.524 kb on - strand, within Pf6N2E2_634at 723.591 kb on - strand, within Pf6N2E2_634at 723.613 kb on + strand, within Pf6N2E2_634at 723.614 kb on - strand, within Pf6N2E2_634at 723.614 kb on - strand, within Pf6N2E2_634at 723.679 kb on + strand, within Pf6N2E2_634at 723.679 kb on + strand, within Pf6N2E2_634at 723.679 kb on + strand, within Pf6N2E2_634at 723.680 kb on - strand, within Pf6N2E2_634at 723.695 kb on - strand, within Pf6N2E2_634at 723.721 kb on + strand, within Pf6N2E2_634at 723.721 kb on + strand, within Pf6N2E2_634at 723.955 kb on + strand, within Pf6N2E2_634at 723.955 kb on + strand, within Pf6N2E2_634at 723.955 kb on + strand, within Pf6N2E2_634at 723.973 kb on + strand, within Pf6N2E2_634at 723.974 kb on - strand, within Pf6N2E2_634at 723.974 kb on - strand, within Pf6N2E2_634at 724.007 kb on + strand, within Pf6N2E2_634at 724.079 kb on + strand, within Pf6N2E2_634at 724.079 kb on + strand, within Pf6N2E2_634at 724.080 kb on - strand, within Pf6N2E2_634at 724.355 kb on - strand, within Pf6N2E2_634at 724.405 kb on + strand, within Pf6N2E2_634at 724.748 kb on - strand, within Pf6N2E2_634at 725.011 kb on + strand, within Pf6N2E2_634at 725.012 kb on - strand, within Pf6N2E2_634at 725.012 kb on - strand, within Pf6N2E2_634at 725.012 kb on - strand, within Pf6N2E2_634at 725.078 kb on + strand, within Pf6N2E2_634at 725.086 kb on + strand, within Pf6N2E2_634at 725.171 kb on - strand, within Pf6N2E2_634at 725.419 kb on + strand, within Pf6N2E2_634at 725.488 kb on + strand, within Pf6N2E2_634at 726.004 kb on + strand, within Pf6N2E2_634at 726.005 kb on - strand, within Pf6N2E2_634at 726.005 kb on - strand, within Pf6N2E2_634at 726.340 kb on + strand, within Pf6N2E2_634at 726.341 kb on - strand, within Pf6N2E2_634at 726.401 kb on - strand, within Pf6N2E2_634at 726.598 kb on + strand, within Pf6N2E2_634at 726.599 kb on - strand, within Pf6N2E2_634at 726.796 kb on + strand, within Pf6N2E2_634at 726.796 kb on + strand, within Pf6N2E2_634at 726.796 kb on + strand, within Pf6N2E2_634at 726.797 kb on - strand, within Pf6N2E2_634at 726.797 kb on - strand, within Pf6N2E2_634at 727.075 kb on + strandat 727.075 kb on + strandat 727.135 kb on + strandat 727.486 kb on + strandat 727.486 kb on + strandat 727.856 kb on - strand, within Pf6N2E2_635at 727.876 kb on + strand, within Pf6N2E2_635at 727.877 kb on - strand, within Pf6N2E2_635at 727.877 kb on - strand, within Pf6N2E2_635at 727.930 kb on + strand, within Pf6N2E2_635at 727.930 kb on + strand, within Pf6N2E2_635at 727.930 kb on + strand, within Pf6N2E2_635at 727.930 kb on + strand, within Pf6N2E2_635at 727.931 kb on - strand, within Pf6N2E2_635at 727.931 kb on - strand, within Pf6N2E2_635at 727.931 kb on - strand, within Pf6N2E2_635at 727.931 kb on - strand, within Pf6N2E2_635at 727.931 kb on - strand, within Pf6N2E2_635at 727.984 kb on + strand, within Pf6N2E2_635at 728.046 kb on + strand, within Pf6N2E2_635at 728.046 kb on + strand, within Pf6N2E2_635at 728.046 kb on + strand, within Pf6N2E2_635at 728.047 kb on - strand, within Pf6N2E2_635at 728.083 kb on + strand, within Pf6N2E2_635at 728.084 kb on - strand, within Pf6N2E2_635at 728.196 kb on + strandat 728.196 kb on + strandat 728.197 kb on - strandat 728.244 kb on + strandat 728.424 kb on - strandat 728.449 kb on + strandat 728.450 kb on - strandat 728.450 kb on - strandat 728.450 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml
remove
721,730 - +2.0
721,772 - -3.0
721,775 - +0.7
721,913 + -0.7
721,913 + +0.8
721,913 + +1.1
721,913 + -0.4
721,913 + +0.8
721,914 - -0.8
721,914 - -0.0
721,914 - +0.7
721,915 + +0.0
721,915 + +0.4
721,915 + +0.8
721,915 + +0.4
721,915 + +0.6
721,915 + +0.4
721,915 + +0.3
721,915 + +0.1
721,915 + +1.5
721,916 - +1.8
721,916 - +1.1
721,916 - -1.0
721,917 + -0.4
721,917 + +0.4
721,917 + +0.3
721,917 + -0.2
721,917 + +0.8
721,917 + +0.0
721,917 + -0.6
721,917 + +0.1
721,917 + +1.6
721,917 + +0.5
721,917 + -0.8
721,918 - +1.6
721,918 - -0.2
721,918 - -1.2
721,918 - -0.7
721,918 - +1.4
721,918 - -1.5
722,415 + -0.8
722,415 + -0.4
722,416 - -0.3
722,529 + +0.5
722,530 - -0.2
722,530 - -1.5
722,530 - -0.2
722,923 + -2.0
722,923 + -1.2
723,445 + Pf6N2E2_634 0.16 +0.3
723,445 + Pf6N2E2_634 0.16 +0.5
723,524 - Pf6N2E2_634 0.17 -0.5
723,524 - Pf6N2E2_634 0.17 -0.2
723,591 - Pf6N2E2_634 0.19 -0.9
723,613 + Pf6N2E2_634 0.19 -0.0
723,614 - Pf6N2E2_634 0.19 +0.4
723,614 - Pf6N2E2_634 0.19 -2.4
723,679 + Pf6N2E2_634 0.20 -0.9
723,679 + Pf6N2E2_634 0.20 -1.5
723,679 + Pf6N2E2_634 0.20 -0.4
723,680 - Pf6N2E2_634 0.20 -1.0
723,695 - Pf6N2E2_634 0.21 -0.9
723,721 + Pf6N2E2_634 0.21 -0.2
723,721 + Pf6N2E2_634 0.21 -0.0
723,955 + Pf6N2E2_634 0.26 -0.2
723,955 + Pf6N2E2_634 0.26 -0.2
723,955 + Pf6N2E2_634 0.26 -0.2
723,973 + Pf6N2E2_634 0.26 -0.9
723,974 - Pf6N2E2_634 0.26 -0.3
723,974 - Pf6N2E2_634 0.26 -1.2
724,007 + Pf6N2E2_634 0.27 -1.7
724,079 + Pf6N2E2_634 0.29 +0.4
724,079 + Pf6N2E2_634 0.29 +1.2
724,080 - Pf6N2E2_634 0.29 -1.5
724,355 - Pf6N2E2_634 0.34 -1.1
724,405 + Pf6N2E2_634 0.35 +1.0
724,748 - Pf6N2E2_634 0.42 -0.2
725,011 + Pf6N2E2_634 0.48 -0.6
725,012 - Pf6N2E2_634 0.48 -0.2
725,012 - Pf6N2E2_634 0.48 -1.6
725,012 - Pf6N2E2_634 0.48 -2.2
725,078 + Pf6N2E2_634 0.49 +0.2
725,086 + Pf6N2E2_634 0.49 -1.7
725,171 - Pf6N2E2_634 0.51 -0.8
725,419 + Pf6N2E2_634 0.56 -0.4
725,488 + Pf6N2E2_634 0.58 -0.3
726,004 + Pf6N2E2_634 0.68 -0.1
726,005 - Pf6N2E2_634 0.68 -2.1
726,005 - Pf6N2E2_634 0.68 +1.2
726,340 + Pf6N2E2_634 0.75 +0.8
726,341 - Pf6N2E2_634 0.75 -1.8
726,401 - Pf6N2E2_634 0.76 -0.2
726,598 + Pf6N2E2_634 0.80 -0.5
726,599 - Pf6N2E2_634 0.80 -0.9
726,796 + Pf6N2E2_634 0.84 -0.0
726,796 + Pf6N2E2_634 0.84 -1.6
726,796 + Pf6N2E2_634 0.84 -2.4
726,797 - Pf6N2E2_634 0.84 +0.1
726,797 - Pf6N2E2_634 0.84 -1.2
727,075 + -0.8
727,075 + -0.8
727,135 + -2.0
727,486 + -1.8
727,486 + -1.2
727,856 - Pf6N2E2_635 0.30 +1.0
727,876 + Pf6N2E2_635 0.35 +1.1
727,877 - Pf6N2E2_635 0.35 +0.9
727,877 - Pf6N2E2_635 0.35 +0.4
727,930 + Pf6N2E2_635 0.48 -0.5
727,930 + Pf6N2E2_635 0.48 -0.3
727,930 + Pf6N2E2_635 0.48 -0.1
727,930 + Pf6N2E2_635 0.48 -0.4
727,931 - Pf6N2E2_635 0.49 +0.8
727,931 - Pf6N2E2_635 0.49 +0.6
727,931 - Pf6N2E2_635 0.49 -0.9
727,931 - Pf6N2E2_635 0.49 -1.6
727,931 - Pf6N2E2_635 0.49 +0.5
727,984 + Pf6N2E2_635 0.62 -0.2
728,046 + Pf6N2E2_635 0.77 +0.1
728,046 + Pf6N2E2_635 0.77 -0.3
728,046 + Pf6N2E2_635 0.77 -2.0
728,047 - Pf6N2E2_635 0.77 -0.6
728,083 + Pf6N2E2_635 0.86 -0.5
728,084 - Pf6N2E2_635 0.86 -0.3
728,196 + -0.3
728,196 + -0.0
728,197 - +1.2
728,244 + +0.5
728,424 - -1.9
728,449 + -0.6
728,450 - -1.9
728,450 - +0.1
728,450 - -0.0

Or see this region's nucleotide sequence