Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01841

Experiment: PYE 4C survival rep1 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 4C survival rep1 28 days
1,971,515	-		CCNA_01840	0.44	+0.8
1,971,571	-		CCNA_01840	0.48	+2.0
1,971,571	-		CCNA_01840	0.48	+1.1
1,971,579	-		CCNA_01840	0.48	+0.6
1,971,587	-		CCNA_01840	0.49	+0.5
1,971,587	-		CCNA_01840	0.49	+2.4
1,971,615	-		CCNA_01840	0.51	+0.3
1,971,662	-		CCNA_01840	0.54	+1.1
1,971,675	-		CCNA_01840	0.55	+1.1
1,971,705	-		CCNA_01840	0.57	+1.6
1,971,712	-		CCNA_01840	0.58	+1.6
1,971,780	+		CCNA_01840	0.62	+1.2
1,971,780	+		CCNA_01840	0.62	+2.8
1,971,788	-		CCNA_01840	0.63	+0.7
1,971,788	-		CCNA_01840	0.63	-0.5
1,971,788	-		CCNA_01840	0.63	-0.7
1,971,788	-		CCNA_01840	0.63	+1.1
1,971,788	-		CCNA_01840	0.63	-1.4
1,971,788	-		CCNA_01840	0.63	+1.2
1,971,903	-		CCNA_01840	0.71	+1.6
1,971,940	-		CCNA_01840	0.73	+0.9
1,971,975	-		CCNA_01840	0.76	-0.1
1,972,067	-		CCNA_01840	0.82	-0.6
1,972,078	-		CCNA_01840	0.83	+0.9
1,972,121	-		CCNA_01840	0.86	-0.6
1,972,197	-				-2.7
1,972,197	-				+1.1
1,972,225	-				-3.7
1,972,227	+				+0.8
1,972,235	-				+0.7
1,972,243	+				+0.2
1,972,243	+				-0.5
1,972,251	-				+1.1
1,972,316	-				+0.5
1,972,384	+				+0.2
1,972,392	-				-1.3
1,972,407	+				-0.9
1,972,415	-				+2.8
1,972,415	-				+0.5
1,972,415	-				-1.4
1,972,477	-				+0.5
1,972,498	+				+2.8
1,972,498	+				-1.6
1,972,506	-				-0.8
1,972,506	-				+0.8
1,972,506	-				-1.5
1,972,506	-				+2.5
1,972,509	+				+2.8
1,972,509	+				+1.2
1,972,512	-				-2.0
1,972,517	-				+1.8
1,972,519	-				+1.2
1,972,551	+				+2.8
1,972,559	-				-0.2
1,972,619	+				-2.7
1,972,621	+				-0.8
1,972,621	+				-2.0
1,972,664	-		CCNA_01841	0.11	-0.7
1,972,665	-		CCNA_01841	0.11	-0.0
1,972,675	-		CCNA_01841	0.11	-0.4
1,972,686	+		CCNA_01841	0.12	-2.3
1,972,692	+		CCNA_01841	0.12	-1.8
1,972,695	-		CCNA_01841	0.13	-2.6
1,972,706	-		CCNA_01841	0.13	-2.0
1,972,735	+		CCNA_01841	0.15	-0.9
1,972,741	+		CCNA_01841	0.15	+1.5
1,972,741	+		CCNA_01841	0.15	+0.5
1,972,757	+		CCNA_01841	0.16	-0.8
1,972,757	+		CCNA_01841	0.16	-2.8
1,972,779	+		CCNA_01841	0.18	-1.1
1,972,779	-		CCNA_01841	0.18	+1.0
1,972,787	-		CCNA_01841	0.18	+0.1
1,972,799	+		CCNA_01841	0.19	-0.2
1,972,817	-		CCNA_01841	0.20	-1.5
1,972,849	+		CCNA_01841	0.22	-0.8
1,972,857	-		CCNA_01841	0.23	-0.0
1,972,872	+		CCNA_01841	0.24	-0.3
1,972,939	+		CCNA_01841	0.28	-2.3
1,972,939	+		CCNA_01841	0.28	+0.5
1,972,947	-		CCNA_01841	0.28	-0.2
1,972,947	-		CCNA_01841	0.28	+0.2
1,973,004	-		CCNA_01841	0.32	-1.0
1,973,079	-		CCNA_01841	0.36	-1.9
1,973,103	-		CCNA_01841	0.38	-0.0
1,973,104	-		CCNA_01841	0.38	-1.5
1,973,283	+		CCNA_01841	0.49	+0.2
1,973,289	+		CCNA_01841	0.49	-0.2
1,973,289	+		CCNA_01841	0.49	-1.5
1,973,297	-		CCNA_01841	0.50	-0.5
1,973,319	+		CCNA_01841	0.51	-0.0
1,973,327	-		CCNA_01841	0.52	+1.8
1,973,327	-		CCNA_01841	0.52	-2.0
1,973,328	-		CCNA_01841	0.52	-0.9
1,973,346	-		CCNA_01841	0.53	+0.6
1,973,359	+		CCNA_01841	0.54	-1.4
1,973,359	+		CCNA_01841	0.54	+2.8
1,973,367	-		CCNA_01841	0.54	-1.7
1,973,440	+		CCNA_01841	0.59	-1.1
1,973,442	-		CCNA_01841	0.59	+1.8
1,973,442	-		CCNA_01841	0.59	-2.8
1,973,442	-		CCNA_01841	0.59	-0.0
1,973,484	-		CCNA_01841	0.61	-1.0
1,973,494	-		CCNA_01841	0.62	+0.5
1,973,499	+		CCNA_01841	0.62	+0.5
1,973,499	+		CCNA_01841	0.62	-2.3
1,973,501	+		CCNA_01841	0.62	-1.8
1,973,507	-		CCNA_01841	0.63	-0.8
1,973,509	-		CCNA_01841	0.63	+1.2
1,973,517	-		CCNA_01841	0.63	+1.2
1,973,540	+		CCNA_01841	0.65	+0.8
1,973,553	-		CCNA_01841	0.66	-0.5
1,973,565	+		CCNA_01841	0.66	-1.0
1,973,565	+		CCNA_01841	0.66	+0.8
1,973,574	-		CCNA_01841	0.67	-1.3
1,973,595	+		CCNA_01841	0.68	+0.5
1,973,612	+		CCNA_01841	0.69	-1.3
1,973,651	+		CCNA_01841	0.72	-2.6
1,973,651	+		CCNA_01841	0.72	-1.3
1,973,664	+		CCNA_01841	0.72	+0.8
1,973,744	+		CCNA_01841	0.77	-1.4
1,973,749	+		CCNA_01841	0.78	-2.0
1,973,774	+		CCNA_01841	0.79	-0.2
1,973,789	+		CCNA_01841	0.80	-2.2
1,973,851	+		CCNA_01841	0.84	-0.8
1,973,868	+		CCNA_01841	0.85	+2.8
1,973,935	+		CCNA_01841	0.89	-0.7
1,973,941	+		CCNA_01841	0.90	+0.4
1,973,941	+		CCNA_01841	0.90	+0.5
1,973,943	-		CCNA_01841	0.90	+1.7
1,973,946	+		CCNA_01841	0.90	-1.6
1,973,959	-				+0.8
1,974,009	+				-0.2
1,974,017	-				+2.8
1,974,017	-				+1.2
1,974,017	-				+0.9
1,974,027	+				-0.4
1,974,076	+				+0.8
1,974,084	+				-1.2
1,974,125	+				+0.4
1,974,133	-				-3.6
1,974,216	-		CCNA_01842	0.32	+0.9
1,974,264	+		CCNA_01842	0.53	+0.5
1,974,310	+		CCNA_01842	0.73	-1.2
1,974,310	+		CCNA_01842	0.73	+0.1
1,974,310	+		CCNA_01842	0.73	-0.4
1,974,318	-		CCNA_01842	0.77	+2.4
1,974,328	-		CCNA_01842	0.81	+2.6
1,974,329	+		CCNA_01842	0.82	-0.4
1,974,432	+				-2.2
1,974,473	+				-0.1
1,974,474	+				-0.9
1,974,493	+				-0.9
1,974,519	-				+2.8
1,974,529	-				-1.6
1,974,537	-				+0.6
1,974,537	-				-0.3
1,974,555	-				+0.6
1,974,555	-				+1.9
1,974,555	-				+0.8
1,974,555	-				+0.2
1,974,601	-				+1.9
1,974,601	-				+2.0
1,974,681	-		CCNA_01843	0.15	+0.8
1,974,682	+		CCNA_01843	0.15	+0.3
1,974,760	+		CCNA_01843	0.20	+0.2
1,974,760	+		CCNA_01843	0.20	+1.2
1,974,761	-		CCNA_01843	0.20	-1.6
1,974,768	-		CCNA_01843	0.20	+3.1
1,974,768	-		CCNA_01843	0.20	-0.1
1,974,783	+		CCNA_01843	0.21	-0.4
1,974,791	-		CCNA_01843	0.22	-1.1
1,974,802	-		CCNA_01843	0.22	-2.0
1,974,806	+		CCNA_01843	0.22	-1.7
1,974,811	+		CCNA_01843	0.23	-1.2
1,974,811	+		CCNA_01843	0.23	-0.3
1,974,811	+		CCNA_01843	0.23	-3.2
1,974,811	+		CCNA_01843	0.23	-1.2
1,974,819	-		CCNA_01843	0.23	+0.2
1,974,819	-		CCNA_01843	0.23	+1.0
1,974,819	-		CCNA_01843	0.23	-1.5
1,974,830	-		CCNA_01843	0.24	+2.8
1,974,846	-		CCNA_01843	0.25	+0.2
1,974,897	+		CCNA_01843	0.28	+1.2
1,974,898	+		CCNA_01843	0.28	+0.4
1,974,903	+		CCNA_01843	0.29	+2.3
1,974,903	+		CCNA_01843	0.29	+0.7
1,974,903	+		CCNA_01843	0.29	+0.2
1,974,911	-		CCNA_01843	0.29	-2.6
1,974,911	-		CCNA_01843	0.29	+0.2
1,974,911	-		CCNA_01843	0.29	-0.7
1,974,912	-		CCNA_01843	0.29	-1.2
1,974,916	+		CCNA_01843	0.29	-0.1
1,974,924	-		CCNA_01843	0.30	-0.9
1,974,924	-		CCNA_01843	0.30	+0.9
1,974,926	+		CCNA_01843	0.30	-2.5
1,974,961	-		CCNA_01843	0.32	+0.3
1,974,989	-		CCNA_01843	0.34	-1.6
1,974,994	+		CCNA_01843	0.34	+1.0
1,975,016	+		CCNA_01843	0.36	+0.8
1,975,016	+		CCNA_01843	0.36	+0.1
1,975,024	-		CCNA_01843	0.36	+1.8
1,975,024	-		CCNA_01843	0.36	-1.1
1,975,064	+		CCNA_01843	0.39	+1.3
1,975,070	-		CCNA_01843	0.39	-2.7
1,975,077	-		CCNA_01843	0.40	+1.4
1,975,086	+		CCNA_01843	0.40	-1.1
1,975,094	-		CCNA_01843	0.41	-1.2
1,975,094	-				-1.3
1,975,104	+		CCNA_01843	0.41	-0.2