Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01841

Experiment: PYE 4C survival rep1 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01840 and CCNA_01841 are separated by 165 nucleotidesCCNA_01841 and CCNA_01842 are separated by 33 nucleotidesCCNA_01842 and CCNA_01843 are separated by 80 nucleotides CCNA_01840: CCNA_01840 - MerR-family transcriptional regulator, at 1,970,882 to 1,972,324 _01840 CCNA_01841: CCNA_01841 - isocitrate lyase, at 1,972,490 to 1,974,109 _01841 CCNA_01842: CCNA_01842 - hypothetical protein, at 1,974,143 to 1,974,370 _01842 CCNA_01843: CCNA_01843 - malate synthase, at 1,974,451 to 1,976,028 _01843 Position (kb) 1972 1973 1974 1975Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1971.515 kb on - strand, within CCNA_01840at 1971.571 kb on - strand, within CCNA_01840at 1971.571 kb on - strand, within CCNA_01840at 1971.579 kb on - strand, within CCNA_01840at 1971.587 kb on - strand, within CCNA_01840at 1971.587 kb on - strand, within CCNA_01840at 1971.615 kb on - strand, within CCNA_01840at 1971.662 kb on - strand, within CCNA_01840at 1971.675 kb on - strand, within CCNA_01840at 1971.705 kb on - strand, within CCNA_01840at 1971.712 kb on - strand, within CCNA_01840at 1971.780 kb on + strand, within CCNA_01840at 1971.780 kb on + strand, within CCNA_01840at 1971.788 kb on - strand, within CCNA_01840at 1971.788 kb on - strand, within CCNA_01840at 1971.788 kb on - strand, within CCNA_01840at 1971.788 kb on - strand, within CCNA_01840at 1971.788 kb on - strand, within CCNA_01840at 1971.788 kb on - strand, within CCNA_01840at 1971.903 kb on - strand, within CCNA_01840at 1971.940 kb on - strand, within CCNA_01840at 1971.975 kb on - strand, within CCNA_01840at 1972.067 kb on - strand, within CCNA_01840at 1972.078 kb on - strand, within CCNA_01840at 1972.121 kb on - strand, within CCNA_01840at 1972.197 kb on - strandat 1972.197 kb on - strandat 1972.225 kb on - strandat 1972.227 kb on + strandat 1972.235 kb on - strandat 1972.243 kb on + strandat 1972.243 kb on + strandat 1972.251 kb on - strandat 1972.316 kb on - strandat 1972.384 kb on + strandat 1972.392 kb on - strandat 1972.407 kb on + strandat 1972.415 kb on - strandat 1972.415 kb on - strandat 1972.415 kb on - strandat 1972.477 kb on - strandat 1972.498 kb on + strandat 1972.498 kb on + strandat 1972.506 kb on - strandat 1972.506 kb on - strandat 1972.506 kb on - strandat 1972.506 kb on - strandat 1972.509 kb on + strandat 1972.509 kb on + strandat 1972.512 kb on - strandat 1972.517 kb on - strandat 1972.519 kb on - strandat 1972.551 kb on + strandat 1972.559 kb on - strandat 1972.619 kb on + strandat 1972.621 kb on + strandat 1972.621 kb on + strandat 1972.664 kb on - strand, within CCNA_01841at 1972.665 kb on - strand, within CCNA_01841at 1972.675 kb on - strand, within CCNA_01841at 1972.686 kb on + strand, within CCNA_01841at 1972.692 kb on + strand, within CCNA_01841at 1972.695 kb on - strand, within CCNA_01841at 1972.706 kb on - strand, within CCNA_01841at 1972.735 kb on + strand, within CCNA_01841at 1972.741 kb on + strand, within CCNA_01841at 1972.741 kb on + strand, within CCNA_01841at 1972.757 kb on + strand, within CCNA_01841at 1972.757 kb on + strand, within CCNA_01841at 1972.779 kb on + strand, within CCNA_01841at 1972.779 kb on - strand, within CCNA_01841at 1972.787 kb on - strand, within CCNA_01841at 1972.799 kb on + strand, within CCNA_01841at 1972.817 kb on - strand, within CCNA_01841at 1972.849 kb on + strand, within CCNA_01841at 1972.857 kb on - strand, within CCNA_01841at 1972.872 kb on + strand, within CCNA_01841at 1972.939 kb on + strand, within CCNA_01841at 1972.939 kb on + strand, within CCNA_01841at 1972.947 kb on - strand, within CCNA_01841at 1972.947 kb on - strand, within CCNA_01841at 1973.004 kb on - strand, within CCNA_01841at 1973.079 kb on - strand, within CCNA_01841at 1973.103 kb on - strand, within CCNA_01841at 1973.104 kb on - strand, within CCNA_01841at 1973.283 kb on + strand, within CCNA_01841at 1973.289 kb on + strand, within CCNA_01841at 1973.289 kb on + strand, within CCNA_01841at 1973.297 kb on - strand, within CCNA_01841at 1973.319 kb on + strand, within CCNA_01841at 1973.327 kb on - strand, within CCNA_01841at 1973.327 kb on - strand, within CCNA_01841at 1973.328 kb on - strand, within CCNA_01841at 1973.346 kb on - strand, within CCNA_01841at 1973.359 kb on + strand, within CCNA_01841at 1973.359 kb on + strand, within CCNA_01841at 1973.367 kb on - strand, within CCNA_01841at 1973.440 kb on + strand, within CCNA_01841at 1973.442 kb on - strand, within CCNA_01841at 1973.442 kb on - strand, within CCNA_01841at 1973.442 kb on - strand, within CCNA_01841at 1973.484 kb on - strand, within CCNA_01841at 1973.494 kb on - strand, within CCNA_01841at 1973.499 kb on + strand, within CCNA_01841at 1973.499 kb on + strand, within CCNA_01841at 1973.501 kb on + strand, within CCNA_01841at 1973.507 kb on - strand, within CCNA_01841at 1973.509 kb on - strand, within CCNA_01841at 1973.517 kb on - strand, within CCNA_01841at 1973.540 kb on + strand, within CCNA_01841at 1973.553 kb on - strand, within CCNA_01841at 1973.565 kb on + strand, within CCNA_01841at 1973.565 kb on + strand, within CCNA_01841at 1973.574 kb on - strand, within CCNA_01841at 1973.595 kb on + strand, within CCNA_01841at 1973.612 kb on + strand, within CCNA_01841at 1973.651 kb on + strand, within CCNA_01841at 1973.651 kb on + strand, within CCNA_01841at 1973.664 kb on + strand, within CCNA_01841at 1973.744 kb on + strand, within CCNA_01841at 1973.749 kb on + strand, within CCNA_01841at 1973.774 kb on + strand, within CCNA_01841at 1973.789 kb on + strand, within CCNA_01841at 1973.851 kb on + strand, within CCNA_01841at 1973.868 kb on + strand, within CCNA_01841at 1973.935 kb on + strand, within CCNA_01841at 1973.941 kb on + strand, within CCNA_01841at 1973.941 kb on + strand, within CCNA_01841at 1973.943 kb on - strand, within CCNA_01841at 1973.946 kb on + strand, within CCNA_01841at 1973.959 kb on - strandat 1974.009 kb on + strandat 1974.017 kb on - strandat 1974.017 kb on - strandat 1974.017 kb on - strandat 1974.027 kb on + strandat 1974.076 kb on + strandat 1974.084 kb on + strandat 1974.125 kb on + strandat 1974.133 kb on - strandat 1974.216 kb on - strand, within CCNA_01842at 1974.264 kb on + strand, within CCNA_01842at 1974.310 kb on + strand, within CCNA_01842at 1974.310 kb on + strand, within CCNA_01842at 1974.310 kb on + strand, within CCNA_01842at 1974.318 kb on - strand, within CCNA_01842at 1974.328 kb on - strand, within CCNA_01842at 1974.329 kb on + strand, within CCNA_01842at 1974.432 kb on + strandat 1974.473 kb on + strandat 1974.474 kb on + strandat 1974.493 kb on + strandat 1974.519 kb on - strandat 1974.529 kb on - strandat 1974.537 kb on - strandat 1974.537 kb on - strandat 1974.555 kb on - strandat 1974.555 kb on - strandat 1974.555 kb on - strandat 1974.555 kb on - strandat 1974.601 kb on - strandat 1974.601 kb on - strandat 1974.681 kb on - strand, within CCNA_01843at 1974.682 kb on + strand, within CCNA_01843at 1974.760 kb on + strand, within CCNA_01843at 1974.760 kb on + strand, within CCNA_01843at 1974.761 kb on - strand, within CCNA_01843at 1974.768 kb on - strand, within CCNA_01843at 1974.768 kb on - strand, within CCNA_01843at 1974.783 kb on + strand, within CCNA_01843at 1974.791 kb on - strand, within CCNA_01843at 1974.802 kb on - strand, within CCNA_01843at 1974.806 kb on + strand, within CCNA_01843at 1974.811 kb on + strand, within CCNA_01843at 1974.811 kb on + strand, within CCNA_01843at 1974.811 kb on + strand, within CCNA_01843at 1974.811 kb on + strand, within CCNA_01843at 1974.819 kb on - strand, within CCNA_01843at 1974.819 kb on - strand, within CCNA_01843at 1974.819 kb on - strand, within CCNA_01843at 1974.830 kb on - strand, within CCNA_01843at 1974.846 kb on - strand, within CCNA_01843at 1974.897 kb on + strand, within CCNA_01843at 1974.898 kb on + strand, within CCNA_01843at 1974.903 kb on + strand, within CCNA_01843at 1974.903 kb on + strand, within CCNA_01843at 1974.903 kb on + strand, within CCNA_01843at 1974.911 kb on - strand, within CCNA_01843at 1974.911 kb on - strand, within CCNA_01843at 1974.911 kb on - strand, within CCNA_01843at 1974.912 kb on - strand, within CCNA_01843at 1974.916 kb on + strand, within CCNA_01843at 1974.924 kb on - strand, within CCNA_01843at 1974.924 kb on - strand, within CCNA_01843at 1974.926 kb on + strand, within CCNA_01843at 1974.961 kb on - strand, within CCNA_01843at 1974.989 kb on - strand, within CCNA_01843at 1974.994 kb on + strand, within CCNA_01843at 1975.016 kb on + strand, within CCNA_01843at 1975.016 kb on + strand, within CCNA_01843at 1975.024 kb on - strand, within CCNA_01843at 1975.024 kb on - strand, within CCNA_01843at 1975.064 kb on + strand, within CCNA_01843at 1975.070 kb on - strand, within CCNA_01843at 1975.077 kb on - strand, within CCNA_01843at 1975.086 kb on + strand, within CCNA_01843at 1975.094 kb on - strand, within CCNA_01843at 1975.094 kb on - strandat 1975.104 kb on + strand, within CCNA_01843

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep1 28 days
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1,971,515 - CCNA_01840 0.44 +0.8
1,971,571 - CCNA_01840 0.48 +2.0
1,971,571 - CCNA_01840 0.48 +1.1
1,971,579 - CCNA_01840 0.48 +0.6
1,971,587 - CCNA_01840 0.49 +0.5
1,971,587 - CCNA_01840 0.49 +2.4
1,971,615 - CCNA_01840 0.51 +0.3
1,971,662 - CCNA_01840 0.54 +1.1
1,971,675 - CCNA_01840 0.55 +1.1
1,971,705 - CCNA_01840 0.57 +1.6
1,971,712 - CCNA_01840 0.58 +1.6
1,971,780 + CCNA_01840 0.62 +1.2
1,971,780 + CCNA_01840 0.62 +2.8
1,971,788 - CCNA_01840 0.63 +0.7
1,971,788 - CCNA_01840 0.63 -0.5
1,971,788 - CCNA_01840 0.63 -0.7
1,971,788 - CCNA_01840 0.63 +1.1
1,971,788 - CCNA_01840 0.63 -1.4
1,971,788 - CCNA_01840 0.63 +1.2
1,971,903 - CCNA_01840 0.71 +1.6
1,971,940 - CCNA_01840 0.73 +0.9
1,971,975 - CCNA_01840 0.76 -0.1
1,972,067 - CCNA_01840 0.82 -0.6
1,972,078 - CCNA_01840 0.83 +0.9
1,972,121 - CCNA_01840 0.86 -0.6
1,972,197 - -2.7
1,972,197 - +1.1
1,972,225 - -3.7
1,972,227 + +0.8
1,972,235 - +0.7
1,972,243 + +0.2
1,972,243 + -0.5
1,972,251 - +1.1
1,972,316 - +0.5
1,972,384 + +0.2
1,972,392 - -1.3
1,972,407 + -0.9
1,972,415 - +2.8
1,972,415 - +0.5
1,972,415 - -1.4
1,972,477 - +0.5
1,972,498 + +2.8
1,972,498 + -1.6
1,972,506 - -0.8
1,972,506 - +0.8
1,972,506 - -1.5
1,972,506 - +2.5
1,972,509 + +2.8
1,972,509 + +1.2
1,972,512 - -2.0
1,972,517 - +1.8
1,972,519 - +1.2
1,972,551 + +2.8
1,972,559 - -0.2
1,972,619 + -2.7
1,972,621 + -0.8
1,972,621 + -2.0
1,972,664 - CCNA_01841 0.11 -0.7
1,972,665 - CCNA_01841 0.11 -0.0
1,972,675 - CCNA_01841 0.11 -0.4
1,972,686 + CCNA_01841 0.12 -2.3
1,972,692 + CCNA_01841 0.12 -1.8
1,972,695 - CCNA_01841 0.13 -2.6
1,972,706 - CCNA_01841 0.13 -2.0
1,972,735 + CCNA_01841 0.15 -0.9
1,972,741 + CCNA_01841 0.15 +1.5
1,972,741 + CCNA_01841 0.15 +0.5
1,972,757 + CCNA_01841 0.16 -0.8
1,972,757 + CCNA_01841 0.16 -2.8
1,972,779 + CCNA_01841 0.18 -1.1
1,972,779 - CCNA_01841 0.18 +1.0
1,972,787 - CCNA_01841 0.18 +0.1
1,972,799 + CCNA_01841 0.19 -0.2
1,972,817 - CCNA_01841 0.20 -1.5
1,972,849 + CCNA_01841 0.22 -0.8
1,972,857 - CCNA_01841 0.23 -0.0
1,972,872 + CCNA_01841 0.24 -0.3
1,972,939 + CCNA_01841 0.28 -2.3
1,972,939 + CCNA_01841 0.28 +0.5
1,972,947 - CCNA_01841 0.28 -0.2
1,972,947 - CCNA_01841 0.28 +0.2
1,973,004 - CCNA_01841 0.32 -1.0
1,973,079 - CCNA_01841 0.36 -1.9
1,973,103 - CCNA_01841 0.38 -0.0
1,973,104 - CCNA_01841 0.38 -1.5
1,973,283 + CCNA_01841 0.49 +0.2
1,973,289 + CCNA_01841 0.49 -0.2
1,973,289 + CCNA_01841 0.49 -1.5
1,973,297 - CCNA_01841 0.50 -0.5
1,973,319 + CCNA_01841 0.51 -0.0
1,973,327 - CCNA_01841 0.52 +1.8
1,973,327 - CCNA_01841 0.52 -2.0
1,973,328 - CCNA_01841 0.52 -0.9
1,973,346 - CCNA_01841 0.53 +0.6
1,973,359 + CCNA_01841 0.54 -1.4
1,973,359 + CCNA_01841 0.54 +2.8
1,973,367 - CCNA_01841 0.54 -1.7
1,973,440 + CCNA_01841 0.59 -1.1
1,973,442 - CCNA_01841 0.59 +1.8
1,973,442 - CCNA_01841 0.59 -2.8
1,973,442 - CCNA_01841 0.59 -0.0
1,973,484 - CCNA_01841 0.61 -1.0
1,973,494 - CCNA_01841 0.62 +0.5
1,973,499 + CCNA_01841 0.62 +0.5
1,973,499 + CCNA_01841 0.62 -2.3
1,973,501 + CCNA_01841 0.62 -1.8
1,973,507 - CCNA_01841 0.63 -0.8
1,973,509 - CCNA_01841 0.63 +1.2
1,973,517 - CCNA_01841 0.63 +1.2
1,973,540 + CCNA_01841 0.65 +0.8
1,973,553 - CCNA_01841 0.66 -0.5
1,973,565 + CCNA_01841 0.66 -1.0
1,973,565 + CCNA_01841 0.66 +0.8
1,973,574 - CCNA_01841 0.67 -1.3
1,973,595 + CCNA_01841 0.68 +0.5
1,973,612 + CCNA_01841 0.69 -1.3
1,973,651 + CCNA_01841 0.72 -2.6
1,973,651 + CCNA_01841 0.72 -1.3
1,973,664 + CCNA_01841 0.72 +0.8
1,973,744 + CCNA_01841 0.77 -1.4
1,973,749 + CCNA_01841 0.78 -2.0
1,973,774 + CCNA_01841 0.79 -0.2
1,973,789 + CCNA_01841 0.80 -2.2
1,973,851 + CCNA_01841 0.84 -0.8
1,973,868 + CCNA_01841 0.85 +2.8
1,973,935 + CCNA_01841 0.89 -0.7
1,973,941 + CCNA_01841 0.90 +0.4
1,973,941 + CCNA_01841 0.90 +0.5
1,973,943 - CCNA_01841 0.90 +1.7
1,973,946 + CCNA_01841 0.90 -1.6
1,973,959 - +0.8
1,974,009 + -0.2
1,974,017 - +2.8
1,974,017 - +1.2
1,974,017 - +0.9
1,974,027 + -0.4
1,974,076 + +0.8
1,974,084 + -1.2
1,974,125 + +0.4
1,974,133 - -3.6
1,974,216 - CCNA_01842 0.32 +0.9
1,974,264 + CCNA_01842 0.53 +0.5
1,974,310 + CCNA_01842 0.73 -1.2
1,974,310 + CCNA_01842 0.73 +0.1
1,974,310 + CCNA_01842 0.73 -0.4
1,974,318 - CCNA_01842 0.77 +2.4
1,974,328 - CCNA_01842 0.81 +2.6
1,974,329 + CCNA_01842 0.82 -0.4
1,974,432 + -2.2
1,974,473 + -0.1
1,974,474 + -0.9
1,974,493 + -0.9
1,974,519 - +2.8
1,974,529 - -1.6
1,974,537 - +0.6
1,974,537 - -0.3
1,974,555 - +0.6
1,974,555 - +1.9
1,974,555 - +0.8
1,974,555 - +0.2
1,974,601 - +1.9
1,974,601 - +2.0
1,974,681 - CCNA_01843 0.15 +0.8
1,974,682 + CCNA_01843 0.15 +0.3
1,974,760 + CCNA_01843 0.20 +0.2
1,974,760 + CCNA_01843 0.20 +1.2
1,974,761 - CCNA_01843 0.20 -1.6
1,974,768 - CCNA_01843 0.20 +3.1
1,974,768 - CCNA_01843 0.20 -0.1
1,974,783 + CCNA_01843 0.21 -0.4
1,974,791 - CCNA_01843 0.22 -1.1
1,974,802 - CCNA_01843 0.22 -2.0
1,974,806 + CCNA_01843 0.22 -1.7
1,974,811 + CCNA_01843 0.23 -1.2
1,974,811 + CCNA_01843 0.23 -0.3
1,974,811 + CCNA_01843 0.23 -3.2
1,974,811 + CCNA_01843 0.23 -1.2
1,974,819 - CCNA_01843 0.23 +0.2
1,974,819 - CCNA_01843 0.23 +1.0
1,974,819 - CCNA_01843 0.23 -1.5
1,974,830 - CCNA_01843 0.24 +2.8
1,974,846 - CCNA_01843 0.25 +0.2
1,974,897 + CCNA_01843 0.28 +1.2
1,974,898 + CCNA_01843 0.28 +0.4
1,974,903 + CCNA_01843 0.29 +2.3
1,974,903 + CCNA_01843 0.29 +0.7
1,974,903 + CCNA_01843 0.29 +0.2
1,974,911 - CCNA_01843 0.29 -2.6
1,974,911 - CCNA_01843 0.29 +0.2
1,974,911 - CCNA_01843 0.29 -0.7
1,974,912 - CCNA_01843 0.29 -1.2
1,974,916 + CCNA_01843 0.29 -0.1
1,974,924 - CCNA_01843 0.30 -0.9
1,974,924 - CCNA_01843 0.30 +0.9
1,974,926 + CCNA_01843 0.30 -2.5
1,974,961 - CCNA_01843 0.32 +0.3
1,974,989 - CCNA_01843 0.34 -1.6
1,974,994 + CCNA_01843 0.34 +1.0
1,975,016 + CCNA_01843 0.36 +0.8
1,975,016 + CCNA_01843 0.36 +0.1
1,975,024 - CCNA_01843 0.36 +1.8
1,975,024 - CCNA_01843 0.36 -1.1
1,975,064 + CCNA_01843 0.39 +1.3
1,975,070 - CCNA_01843 0.39 -2.7
1,975,077 - CCNA_01843 0.40 +1.4
1,975,086 + CCNA_01843 0.40 -1.1
1,975,094 - CCNA_01843 0.41 -1.2
1,975,094 - -1.3
1,975,104 + CCNA_01843 0.41 -0.2

Or see this region's nucleotide sequence