Experiment: PYE 4C survival rep1 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01840 and CCNA_01841 are separated by 165 nucleotides CCNA_01841 and CCNA_01842 are separated by 33 nucleotides CCNA_01842 and CCNA_01843 are separated by 80 nucleotides
CCNA_01840: CCNA_01840 - MerR-family transcriptional regulator, at 1,970,882 to 1,972,324
_01840
CCNA_01841: CCNA_01841 - isocitrate lyase, at 1,972,490 to 1,974,109
_01841
CCNA_01842: CCNA_01842 - hypothetical protein, at 1,974,143 to 1,974,370
_01842
CCNA_01843: CCNA_01843 - malate synthase, at 1,974,451 to 1,976,028
_01843
Position (kb)
1972
1973
1974
1975 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1971.515 kb on - strand, within CCNA_01840 at 1971.571 kb on - strand, within CCNA_01840 at 1971.571 kb on - strand, within CCNA_01840 at 1971.579 kb on - strand, within CCNA_01840 at 1971.587 kb on - strand, within CCNA_01840 at 1971.587 kb on - strand, within CCNA_01840 at 1971.615 kb on - strand, within CCNA_01840 at 1971.662 kb on - strand, within CCNA_01840 at 1971.675 kb on - strand, within CCNA_01840 at 1971.705 kb on - strand, within CCNA_01840 at 1971.712 kb on - strand, within CCNA_01840 at 1971.780 kb on + strand, within CCNA_01840 at 1971.780 kb on + strand, within CCNA_01840 at 1971.788 kb on - strand, within CCNA_01840 at 1971.788 kb on - strand, within CCNA_01840 at 1971.788 kb on - strand, within CCNA_01840 at 1971.788 kb on - strand, within CCNA_01840 at 1971.788 kb on - strand, within CCNA_01840 at 1971.788 kb on - strand, within CCNA_01840 at 1971.903 kb on - strand, within CCNA_01840 at 1971.940 kb on - strand, within CCNA_01840 at 1971.975 kb on - strand, within CCNA_01840 at 1972.067 kb on - strand, within CCNA_01840 at 1972.078 kb on - strand, within CCNA_01840 at 1972.121 kb on - strand, within CCNA_01840 at 1972.197 kb on - strand at 1972.197 kb on - strand at 1972.225 kb on - strand at 1972.227 kb on + strand at 1972.235 kb on - strand at 1972.243 kb on + strand at 1972.243 kb on + strand at 1972.251 kb on - strand at 1972.316 kb on - strand at 1972.384 kb on + strand at 1972.392 kb on - strand at 1972.407 kb on + strand at 1972.415 kb on - strand at 1972.415 kb on - strand at 1972.415 kb on - strand at 1972.477 kb on - strand at 1972.498 kb on + strand at 1972.498 kb on + strand at 1972.506 kb on - strand at 1972.506 kb on - strand at 1972.506 kb on - strand at 1972.506 kb on - strand at 1972.509 kb on + strand at 1972.509 kb on + strand at 1972.512 kb on - strand at 1972.517 kb on - strand at 1972.519 kb on - strand at 1972.551 kb on + strand at 1972.559 kb on - strand at 1972.619 kb on + strand at 1972.621 kb on + strand at 1972.621 kb on + strand at 1972.664 kb on - strand, within CCNA_01841 at 1972.665 kb on - strand, within CCNA_01841 at 1972.675 kb on - strand, within CCNA_01841 at 1972.686 kb on + strand, within CCNA_01841 at 1972.692 kb on + strand, within CCNA_01841 at 1972.695 kb on - strand, within CCNA_01841 at 1972.706 kb on - strand, within CCNA_01841 at 1972.735 kb on + strand, within CCNA_01841 at 1972.741 kb on + strand, within CCNA_01841 at 1972.741 kb on + strand, within CCNA_01841 at 1972.757 kb on + strand, within CCNA_01841 at 1972.757 kb on + strand, within CCNA_01841 at 1972.779 kb on + strand, within CCNA_01841 at 1972.779 kb on - strand, within CCNA_01841 at 1972.787 kb on - strand, within CCNA_01841 at 1972.799 kb on + strand, within CCNA_01841 at 1972.817 kb on - strand, within CCNA_01841 at 1972.849 kb on + strand, within CCNA_01841 at 1972.857 kb on - strand, within CCNA_01841 at 1972.872 kb on + strand, within CCNA_01841 at 1972.939 kb on + strand, within CCNA_01841 at 1972.939 kb on + strand, within CCNA_01841 at 1972.947 kb on - strand, within CCNA_01841 at 1972.947 kb on - strand, within CCNA_01841 at 1973.004 kb on - strand, within CCNA_01841 at 1973.079 kb on - strand, within CCNA_01841 at 1973.103 kb on - strand, within CCNA_01841 at 1973.104 kb on - strand, within CCNA_01841 at 1973.283 kb on + strand, within CCNA_01841 at 1973.289 kb on + strand, within CCNA_01841 at 1973.289 kb on + strand, within CCNA_01841 at 1973.297 kb on - strand, within CCNA_01841 at 1973.319 kb on + strand, within CCNA_01841 at 1973.327 kb on - strand, within CCNA_01841 at 1973.327 kb on - strand, within CCNA_01841 at 1973.328 kb on - strand, within CCNA_01841 at 1973.346 kb on - strand, within CCNA_01841 at 1973.359 kb on + strand, within CCNA_01841 at 1973.359 kb on + strand, within CCNA_01841 at 1973.367 kb on - strand, within CCNA_01841 at 1973.440 kb on + strand, within CCNA_01841 at 1973.442 kb on - strand, within CCNA_01841 at 1973.442 kb on - strand, within CCNA_01841 at 1973.442 kb on - strand, within CCNA_01841 at 1973.484 kb on - strand, within CCNA_01841 at 1973.494 kb on - strand, within CCNA_01841 at 1973.499 kb on + strand, within CCNA_01841 at 1973.499 kb on + strand, within CCNA_01841 at 1973.501 kb on + strand, within CCNA_01841 at 1973.507 kb on - strand, within CCNA_01841 at 1973.509 kb on - strand, within CCNA_01841 at 1973.517 kb on - strand, within CCNA_01841 at 1973.540 kb on + strand, within CCNA_01841 at 1973.553 kb on - strand, within CCNA_01841 at 1973.565 kb on + strand, within CCNA_01841 at 1973.565 kb on + strand, within CCNA_01841 at 1973.574 kb on - strand, within CCNA_01841 at 1973.595 kb on + strand, within CCNA_01841 at 1973.612 kb on + strand, within CCNA_01841 at 1973.651 kb on + strand, within CCNA_01841 at 1973.651 kb on + strand, within CCNA_01841 at 1973.664 kb on + strand, within CCNA_01841 at 1973.744 kb on + strand, within CCNA_01841 at 1973.749 kb on + strand, within CCNA_01841 at 1973.774 kb on + strand, within CCNA_01841 at 1973.789 kb on + strand, within CCNA_01841 at 1973.851 kb on + strand, within CCNA_01841 at 1973.868 kb on + strand, within CCNA_01841 at 1973.935 kb on + strand, within CCNA_01841 at 1973.941 kb on + strand, within CCNA_01841 at 1973.941 kb on + strand, within CCNA_01841 at 1973.943 kb on - strand, within CCNA_01841 at 1973.946 kb on + strand, within CCNA_01841 at 1973.959 kb on - strand at 1974.009 kb on + strand at 1974.017 kb on - strand at 1974.017 kb on - strand at 1974.017 kb on - strand at 1974.027 kb on + strand at 1974.076 kb on + strand at 1974.084 kb on + strand at 1974.125 kb on + strand at 1974.133 kb on - strand at 1974.216 kb on - strand, within CCNA_01842 at 1974.264 kb on + strand, within CCNA_01842 at 1974.310 kb on + strand, within CCNA_01842 at 1974.310 kb on + strand, within CCNA_01842 at 1974.310 kb on + strand, within CCNA_01842 at 1974.318 kb on - strand, within CCNA_01842 at 1974.328 kb on - strand, within CCNA_01842 at 1974.329 kb on + strand, within CCNA_01842 at 1974.432 kb on + strand at 1974.473 kb on + strand at 1974.474 kb on + strand at 1974.493 kb on + strand at 1974.519 kb on - strand at 1974.529 kb on - strand at 1974.537 kb on - strand at 1974.537 kb on - strand at 1974.555 kb on - strand at 1974.555 kb on - strand at 1974.555 kb on - strand at 1974.555 kb on - strand at 1974.601 kb on - strand at 1974.601 kb on - strand at 1974.681 kb on - strand, within CCNA_01843 at 1974.682 kb on + strand, within CCNA_01843 at 1974.760 kb on + strand, within CCNA_01843 at 1974.760 kb on + strand, within CCNA_01843 at 1974.761 kb on - strand, within CCNA_01843 at 1974.768 kb on - strand, within CCNA_01843 at 1974.768 kb on - strand, within CCNA_01843 at 1974.783 kb on + strand, within CCNA_01843 at 1974.791 kb on - strand, within CCNA_01843 at 1974.802 kb on - strand, within CCNA_01843 at 1974.806 kb on + strand, within CCNA_01843 at 1974.811 kb on + strand, within CCNA_01843 at 1974.811 kb on + strand, within CCNA_01843 at 1974.811 kb on + strand, within CCNA_01843 at 1974.811 kb on + strand, within CCNA_01843 at 1974.819 kb on - strand, within CCNA_01843 at 1974.819 kb on - strand, within CCNA_01843 at 1974.819 kb on - strand, within CCNA_01843 at 1974.830 kb on - strand, within CCNA_01843 at 1974.846 kb on - strand, within CCNA_01843 at 1974.897 kb on + strand, within CCNA_01843 at 1974.898 kb on + strand, within CCNA_01843 at 1974.903 kb on + strand, within CCNA_01843 at 1974.903 kb on + strand, within CCNA_01843 at 1974.903 kb on + strand, within CCNA_01843 at 1974.911 kb on - strand, within CCNA_01843 at 1974.911 kb on - strand, within CCNA_01843 at 1974.911 kb on - strand, within CCNA_01843 at 1974.912 kb on - strand, within CCNA_01843 at 1974.916 kb on + strand, within CCNA_01843 at 1974.924 kb on - strand, within CCNA_01843 at 1974.924 kb on - strand, within CCNA_01843 at 1974.926 kb on + strand, within CCNA_01843 at 1974.961 kb on - strand, within CCNA_01843 at 1974.989 kb on - strand, within CCNA_01843 at 1974.994 kb on + strand, within CCNA_01843 at 1975.016 kb on + strand, within CCNA_01843 at 1975.016 kb on + strand, within CCNA_01843 at 1975.024 kb on - strand, within CCNA_01843 at 1975.024 kb on - strand, within CCNA_01843 at 1975.064 kb on + strand, within CCNA_01843 at 1975.070 kb on - strand, within CCNA_01843 at 1975.077 kb on - strand, within CCNA_01843 at 1975.086 kb on + strand, within CCNA_01843 at 1975.094 kb on - strand, within CCNA_01843 at 1975.094 kb on - strand at 1975.104 kb on + strand, within CCNA_01843
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 4C survival rep1 28 days remove 1,971,515 - CCNA_01840 0.44 +0.8 1,971,571 - CCNA_01840 0.48 +2.0 1,971,571 - CCNA_01840 0.48 +1.1 1,971,579 - CCNA_01840 0.48 +0.6 1,971,587 - CCNA_01840 0.49 +0.5 1,971,587 - CCNA_01840 0.49 +2.4 1,971,615 - CCNA_01840 0.51 +0.3 1,971,662 - CCNA_01840 0.54 +1.1 1,971,675 - CCNA_01840 0.55 +1.1 1,971,705 - CCNA_01840 0.57 +1.6 1,971,712 - CCNA_01840 0.58 +1.6 1,971,780 + CCNA_01840 0.62 +1.2 1,971,780 + CCNA_01840 0.62 +2.8 1,971,788 - CCNA_01840 0.63 +0.7 1,971,788 - CCNA_01840 0.63 -0.5 1,971,788 - CCNA_01840 0.63 -0.7 1,971,788 - CCNA_01840 0.63 +1.1 1,971,788 - CCNA_01840 0.63 -1.4 1,971,788 - CCNA_01840 0.63 +1.2 1,971,903 - CCNA_01840 0.71 +1.6 1,971,940 - CCNA_01840 0.73 +0.9 1,971,975 - CCNA_01840 0.76 -0.1 1,972,067 - CCNA_01840 0.82 -0.6 1,972,078 - CCNA_01840 0.83 +0.9 1,972,121 - CCNA_01840 0.86 -0.6 1,972,197 - -2.7 1,972,197 - +1.1 1,972,225 - -3.7 1,972,227 + +0.8 1,972,235 - +0.7 1,972,243 + +0.2 1,972,243 + -0.5 1,972,251 - +1.1 1,972,316 - +0.5 1,972,384 + +0.2 1,972,392 - -1.3 1,972,407 + -0.9 1,972,415 - +2.8 1,972,415 - +0.5 1,972,415 - -1.4 1,972,477 - +0.5 1,972,498 + +2.8 1,972,498 + -1.6 1,972,506 - -0.8 1,972,506 - +0.8 1,972,506 - -1.5 1,972,506 - +2.5 1,972,509 + +2.8 1,972,509 + +1.2 1,972,512 - -2.0 1,972,517 - +1.8 1,972,519 - +1.2 1,972,551 + +2.8 1,972,559 - -0.2 1,972,619 + -2.7 1,972,621 + -0.8 1,972,621 + -2.0 1,972,664 - CCNA_01841 0.11 -0.7 1,972,665 - CCNA_01841 0.11 -0.0 1,972,675 - CCNA_01841 0.11 -0.4 1,972,686 + CCNA_01841 0.12 -2.3 1,972,692 + CCNA_01841 0.12 -1.8 1,972,695 - CCNA_01841 0.13 -2.6 1,972,706 - CCNA_01841 0.13 -2.0 1,972,735 + CCNA_01841 0.15 -0.9 1,972,741 + CCNA_01841 0.15 +1.5 1,972,741 + CCNA_01841 0.15 +0.5 1,972,757 + CCNA_01841 0.16 -0.8 1,972,757 + CCNA_01841 0.16 -2.8 1,972,779 + CCNA_01841 0.18 -1.1 1,972,779 - CCNA_01841 0.18 +1.0 1,972,787 - CCNA_01841 0.18 +0.1 1,972,799 + CCNA_01841 0.19 -0.2 1,972,817 - CCNA_01841 0.20 -1.5 1,972,849 + CCNA_01841 0.22 -0.8 1,972,857 - CCNA_01841 0.23 -0.0 1,972,872 + CCNA_01841 0.24 -0.3 1,972,939 + CCNA_01841 0.28 -2.3 1,972,939 + CCNA_01841 0.28 +0.5 1,972,947 - CCNA_01841 0.28 -0.2 1,972,947 - CCNA_01841 0.28 +0.2 1,973,004 - CCNA_01841 0.32 -1.0 1,973,079 - CCNA_01841 0.36 -1.9 1,973,103 - CCNA_01841 0.38 -0.0 1,973,104 - CCNA_01841 0.38 -1.5 1,973,283 + CCNA_01841 0.49 +0.2 1,973,289 + CCNA_01841 0.49 -0.2 1,973,289 + CCNA_01841 0.49 -1.5 1,973,297 - CCNA_01841 0.50 -0.5 1,973,319 + CCNA_01841 0.51 -0.0 1,973,327 - CCNA_01841 0.52 +1.8 1,973,327 - CCNA_01841 0.52 -2.0 1,973,328 - CCNA_01841 0.52 -0.9 1,973,346 - CCNA_01841 0.53 +0.6 1,973,359 + CCNA_01841 0.54 -1.4 1,973,359 + CCNA_01841 0.54 +2.8 1,973,367 - CCNA_01841 0.54 -1.7 1,973,440 + CCNA_01841 0.59 -1.1 1,973,442 - CCNA_01841 0.59 +1.8 1,973,442 - CCNA_01841 0.59 -2.8 1,973,442 - CCNA_01841 0.59 -0.0 1,973,484 - CCNA_01841 0.61 -1.0 1,973,494 - CCNA_01841 0.62 +0.5 1,973,499 + CCNA_01841 0.62 +0.5 1,973,499 + CCNA_01841 0.62 -2.3 1,973,501 + CCNA_01841 0.62 -1.8 1,973,507 - CCNA_01841 0.63 -0.8 1,973,509 - CCNA_01841 0.63 +1.2 1,973,517 - CCNA_01841 0.63 +1.2 1,973,540 + CCNA_01841 0.65 +0.8 1,973,553 - CCNA_01841 0.66 -0.5 1,973,565 + CCNA_01841 0.66 -1.0 1,973,565 + CCNA_01841 0.66 +0.8 1,973,574 - CCNA_01841 0.67 -1.3 1,973,595 + CCNA_01841 0.68 +0.5 1,973,612 + CCNA_01841 0.69 -1.3 1,973,651 + CCNA_01841 0.72 -2.6 1,973,651 + CCNA_01841 0.72 -1.3 1,973,664 + CCNA_01841 0.72 +0.8 1,973,744 + CCNA_01841 0.77 -1.4 1,973,749 + CCNA_01841 0.78 -2.0 1,973,774 + CCNA_01841 0.79 -0.2 1,973,789 + CCNA_01841 0.80 -2.2 1,973,851 + CCNA_01841 0.84 -0.8 1,973,868 + CCNA_01841 0.85 +2.8 1,973,935 + CCNA_01841 0.89 -0.7 1,973,941 + CCNA_01841 0.90 +0.4 1,973,941 + CCNA_01841 0.90 +0.5 1,973,943 - CCNA_01841 0.90 +1.7 1,973,946 + CCNA_01841 0.90 -1.6 1,973,959 - +0.8 1,974,009 + -0.2 1,974,017 - +2.8 1,974,017 - +1.2 1,974,017 - +0.9 1,974,027 + -0.4 1,974,076 + +0.8 1,974,084 + -1.2 1,974,125 + +0.4 1,974,133 - -3.6 1,974,216 - CCNA_01842 0.32 +0.9 1,974,264 + CCNA_01842 0.53 +0.5 1,974,310 + CCNA_01842 0.73 -1.2 1,974,310 + CCNA_01842 0.73 +0.1 1,974,310 + CCNA_01842 0.73 -0.4 1,974,318 - CCNA_01842 0.77 +2.4 1,974,328 - CCNA_01842 0.81 +2.6 1,974,329 + CCNA_01842 0.82 -0.4 1,974,432 + -2.2 1,974,473 + -0.1 1,974,474 + -0.9 1,974,493 + -0.9 1,974,519 - +2.8 1,974,529 - -1.6 1,974,537 - +0.6 1,974,537 - -0.3 1,974,555 - +0.6 1,974,555 - +1.9 1,974,555 - +0.8 1,974,555 - +0.2 1,974,601 - +1.9 1,974,601 - +2.0 1,974,681 - CCNA_01843 0.15 +0.8 1,974,682 + CCNA_01843 0.15 +0.3 1,974,760 + CCNA_01843 0.20 +0.2 1,974,760 + CCNA_01843 0.20 +1.2 1,974,761 - CCNA_01843 0.20 -1.6 1,974,768 - CCNA_01843 0.20 +3.1 1,974,768 - CCNA_01843 0.20 -0.1 1,974,783 + CCNA_01843 0.21 -0.4 1,974,791 - CCNA_01843 0.22 -1.1 1,974,802 - CCNA_01843 0.22 -2.0 1,974,806 + CCNA_01843 0.22 -1.7 1,974,811 + CCNA_01843 0.23 -1.2 1,974,811 + CCNA_01843 0.23 -0.3 1,974,811 + CCNA_01843 0.23 -3.2 1,974,811 + CCNA_01843 0.23 -1.2 1,974,819 - CCNA_01843 0.23 +0.2 1,974,819 - CCNA_01843 0.23 +1.0 1,974,819 - CCNA_01843 0.23 -1.5 1,974,830 - CCNA_01843 0.24 +2.8 1,974,846 - CCNA_01843 0.25 +0.2 1,974,897 + CCNA_01843 0.28 +1.2 1,974,898 + CCNA_01843 0.28 +0.4 1,974,903 + CCNA_01843 0.29 +2.3 1,974,903 + CCNA_01843 0.29 +0.7 1,974,903 + CCNA_01843 0.29 +0.2 1,974,911 - CCNA_01843 0.29 -2.6 1,974,911 - CCNA_01843 0.29 +0.2 1,974,911 - CCNA_01843 0.29 -0.7 1,974,912 - CCNA_01843 0.29 -1.2 1,974,916 + CCNA_01843 0.29 -0.1 1,974,924 - CCNA_01843 0.30 -0.9 1,974,924 - CCNA_01843 0.30 +0.9 1,974,926 + CCNA_01843 0.30 -2.5 1,974,961 - CCNA_01843 0.32 +0.3 1,974,989 - CCNA_01843 0.34 -1.6 1,974,994 + CCNA_01843 0.34 +1.0 1,975,016 + CCNA_01843 0.36 +0.8 1,975,016 + CCNA_01843 0.36 +0.1 1,975,024 - CCNA_01843 0.36 +1.8 1,975,024 - CCNA_01843 0.36 -1.1 1,975,064 + CCNA_01843 0.39 +1.3 1,975,070 - CCNA_01843 0.39 -2.7 1,975,077 - CCNA_01843 0.40 +1.4 1,975,086 + CCNA_01843 0.40 -1.1 1,975,094 - CCNA_01843 0.41 -1.2 1,975,094 - -1.3 1,975,104 + CCNA_01843 0.41 -0.2
Or see this region's nucleotide sequence