Experiment: PYE 4C survival rep1 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00754 and CCNA_00755 are separated by 147 nucleotides CCNA_00755 and CCNA_00756 overlap by 43 nucleotides CCNA_00756 and CCNA_00757 are separated by 135 nucleotides
CCNA_00754: CCNA_00754 - Nodulin-21 / CCC1-related protein, at 812,595 to 813,296
_00754
CCNA_00755: CCNA_00755 - tellurium resistance protein terB, at 813,444 to 813,884
_00755
CCNA_00756: CCNA_00756 - hypothetical protein, at 813,842 to 814,120
_00756
CCNA_00757: CCNA_00757 - lysyl-tRNA synthetase, at 814,256 to 815,314
_00757
Position (kb) 813
814 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 812.508 kb on - strand at 812.593 kb on + strand at 812.603 kb on - strand at 812.603 kb on - strand at 812.605 kb on + strand at 812.613 kb on - strand at 812.638 kb on + strand at 812.643 kb on + strand at 812.643 kb on + strand at 812.651 kb on - strand at 812.653 kb on + strand at 812.653 kb on + strand at 812.721 kb on - strand, within CCNA_00754 at 812.721 kb on - strand, within CCNA_00754 at 812.721 kb on - strand, within CCNA_00754 at 812.726 kb on - strand, within CCNA_00754 at 812.726 kb on - strand, within CCNA_00754 at 812.726 kb on - strand, within CCNA_00754 at 812.726 kb on - strand, within CCNA_00754 at 812.732 kb on + strand, within CCNA_00754 at 812.736 kb on + strand, within CCNA_00754 at 812.736 kb on - strand, within CCNA_00754 at 812.743 kb on - strand, within CCNA_00754 at 812.743 kb on - strand, within CCNA_00754 at 812.744 kb on - strand, within CCNA_00754 at 812.744 kb on - strand, within CCNA_00754 at 812.776 kb on + strand, within CCNA_00754 at 812.838 kb on + strand, within CCNA_00754 at 812.838 kb on + strand, within CCNA_00754 at 812.838 kb on + strand, within CCNA_00754 at 812.838 kb on + strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.869 kb on - strand, within CCNA_00754 at 812.871 kb on - strand, within CCNA_00754 at 812.923 kb on + strand, within CCNA_00754 at 812.942 kb on + strand, within CCNA_00754 at 813.034 kb on - strand, within CCNA_00754 at 813.055 kb on - strand, within CCNA_00754 at 813.100 kb on - strand, within CCNA_00754 at 813.126 kb on + strand, within CCNA_00754 at 813.154 kb on - strand, within CCNA_00754 at 813.154 kb on - strand, within CCNA_00754 at 813.157 kb on + strand, within CCNA_00754 at 813.178 kb on + strand, within CCNA_00754 at 813.222 kb on + strand, within CCNA_00754 at 813.281 kb on + strand at 813.291 kb on + strand at 813.291 kb on + strand at 813.300 kb on - strand at 813.313 kb on - strand at 813.317 kb on - strand at 813.320 kb on + strand at 813.320 kb on + strand at 813.320 kb on + strand at 813.328 kb on - strand at 813.333 kb on - strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.366 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.386 kb on + strand at 813.427 kb on + strand at 813.442 kb on + strand at 813.450 kb on - strand at 813.450 kb on - strand at 813.452 kb on + strand at 813.464 kb on + strand at 813.470 kb on + strand at 813.484 kb on - strand at 813.497 kb on - strand, within CCNA_00755 at 813.549 kb on + strand, within CCNA_00755 at 813.549 kb on + strand, within CCNA_00755 at 813.557 kb on - strand, within CCNA_00755 at 813.562 kb on + strand, within CCNA_00755 at 813.562 kb on - strand, within CCNA_00755 at 813.569 kb on + strand, within CCNA_00755 at 813.602 kb on + strand, within CCNA_00755 at 813.610 kb on - strand, within CCNA_00755 at 813.621 kb on - strand, within CCNA_00755 at 813.621 kb on - strand, within CCNA_00755 at 813.621 kb on - strand, within CCNA_00755 at 813.621 kb on - strand, within CCNA_00755 at 813.626 kb on - strand, within CCNA_00755 at 813.678 kb on + strand, within CCNA_00755 at 813.678 kb on + strand, within CCNA_00755 at 813.686 kb on - strand, within CCNA_00755 at 813.686 kb on - strand, within CCNA_00755 at 813.686 kb on - strand, within CCNA_00755 at 813.691 kb on + strand, within CCNA_00755 at 813.693 kb on + strand, within CCNA_00755 at 813.693 kb on + strand, within CCNA_00755 at 813.710 kb on - strand, within CCNA_00755 at 813.866 kb on - strand at 813.866 kb on - strand at 813.866 kb on - strand at 813.866 kb on - strand at 813.879 kb on + strand at 813.884 kb on + strand at 813.913 kb on + strand, within CCNA_00756 at 813.916 kb on - strand, within CCNA_00756 at 814.011 kb on - strand, within CCNA_00756 at 814.013 kb on + strand, within CCNA_00756 at 814.044 kb on - strand, within CCNA_00756 at 814.044 kb on - strand, within CCNA_00756 at 814.044 kb on - strand, within CCNA_00756 at 814.044 kb on - strand, within CCNA_00756 at 814.074 kb on + strand, within CCNA_00756 at 814.126 kb on - strand at 814.146 kb on + strand at 814.148 kb on - strand at 814.164 kb on + strand at 814.164 kb on + strand at 814.172 kb on - strand at 814.172 kb on - strand at 814.181 kb on - strand at 814.212 kb on + strand at 814.253 kb on + strand at 814.259 kb on - strand at 814.259 kb on - strand at 814.325 kb on + strand at 814.331 kb on + strand at 814.331 kb on + strand at 814.331 kb on + strand at 814.339 kb on - strand at 814.339 kb on - strand at 814.339 kb on - strand at 814.374 kb on + strand, within CCNA_00757 at 814.374 kb on + strand, within CCNA_00757 at 814.415 kb on - strand, within CCNA_00757 at 814.421 kb on - strand, within CCNA_00757 at 814.493 kb on - strand, within CCNA_00757 at 814.495 kb on + strand, within CCNA_00757 at 814.498 kb on - strand, within CCNA_00757 at 814.498 kb on - strand, within CCNA_00757 at 814.503 kb on - strand, within CCNA_00757 at 814.503 kb on - strand, within CCNA_00757 at 814.503 kb on - strand, within CCNA_00757 at 814.508 kb on + strand, within CCNA_00757 at 814.516 kb on + strand, within CCNA_00757 at 814.523 kb on + strand, within CCNA_00757 at 814.530 kb on + strand, within CCNA_00757 at 814.559 kb on + strand, within CCNA_00757 at 814.559 kb on + strand, within CCNA_00757 at 814.559 kb on + strand, within CCNA_00757 at 814.559 kb on + strand, within CCNA_00757 at 814.559 kb on + strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.602 kb on - strand, within CCNA_00757 at 814.624 kb on + strand, within CCNA_00757 at 814.631 kb on - strand, within CCNA_00757 at 814.739 kb on - strand, within CCNA_00757 at 814.825 kb on + strand, within CCNA_00757 at 814.833 kb on - strand, within CCNA_00757
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 4C survival rep1 28 days remove 812,508 - +1.2 812,593 + -1.4 812,603 - +1.1 812,603 - +0.4 812,605 + +0.9 812,613 - -4.1 812,638 + +0.6 812,643 + -1.8 812,643 + -1.1 812,651 - +0.8 812,653 + -0.3 812,653 + -0.4 812,721 - CCNA_00754 0.18 +0.8 812,721 - CCNA_00754 0.18 +1.4 812,721 - CCNA_00754 0.18 +1.0 812,726 - CCNA_00754 0.19 +1.4 812,726 - CCNA_00754 0.19 -0.8 812,726 - CCNA_00754 0.19 +0.9 812,726 - CCNA_00754 0.19 -0.7 812,732 + CCNA_00754 0.20 +1.0 812,736 + CCNA_00754 0.20 +0.0 812,736 - CCNA_00754 0.20 -0.2 812,743 - CCNA_00754 0.21 -0.4 812,743 - CCNA_00754 0.21 +0.2 812,744 - CCNA_00754 0.21 -1.8 812,744 - CCNA_00754 0.21 +1.0 812,776 + CCNA_00754 0.26 -0.4 812,838 + CCNA_00754 0.35 +0.3 812,838 + CCNA_00754 0.35 -0.4 812,838 + CCNA_00754 0.35 +0.2 812,838 + CCNA_00754 0.35 -1.3 812,846 - CCNA_00754 0.36 -0.0 812,846 - CCNA_00754 0.36 -0.2 812,846 - CCNA_00754 0.36 -0.3 812,846 - CCNA_00754 0.36 +0.7 812,846 - CCNA_00754 0.36 +0.8 812,846 - CCNA_00754 0.36 +0.3 812,869 - CCNA_00754 0.39 -0.0 812,871 - CCNA_00754 0.39 +0.4 812,923 + CCNA_00754 0.47 -0.2 812,942 + CCNA_00754 0.49 +1.6 813,034 - CCNA_00754 0.63 -1.0 813,055 - CCNA_00754 0.66 -1.9 813,100 - CCNA_00754 0.72 -1.0 813,126 + CCNA_00754 0.76 -1.2 813,154 - CCNA_00754 0.80 -1.0 813,154 - CCNA_00754 0.80 +3.9 813,157 + CCNA_00754 0.80 -0.2 813,178 + CCNA_00754 0.83 -1.7 813,222 + CCNA_00754 0.89 +0.2 813,281 + +0.1 813,291 + +0.3 813,291 + -3.1 813,300 - -1.3 813,313 - +0.4 813,317 - +3.4 813,320 + -2.2 813,320 + -1.5 813,320 + +0.6 813,328 - -1.3 813,333 - -0.8 813,344 + -1.3 813,344 + +2.6 813,344 + -0.6 813,344 + +1.0 813,344 + +0.0 813,344 + -0.3 813,344 + +0.3 813,344 + +0.0 813,344 + -1.3 813,344 + +3.0 813,344 + +0.4 813,344 + -0.8 813,352 - -0.8 813,352 - +0.7 813,352 - +1.2 813,352 - +0.7 813,352 - +0.6 813,352 - -2.2 813,352 - +0.6 813,352 - +0.5 813,366 + -2.6 813,373 + +2.3 813,373 + -0.9 813,373 + -3.2 813,373 + +0.5 813,373 + +0.9 813,373 + +1.6 813,373 + -2.5 813,373 + +0.6 813,373 + +2.8 813,373 + -2.7 813,373 + -1.1 813,373 + +1.1 813,373 + +0.5 813,373 + +0.9 813,373 + +0.6 813,373 + -2.0 813,373 + -1.4 813,381 - +1.8 813,381 - -2.3 813,381 - +0.4 813,381 - +0.8 813,381 - -1.1 813,381 - -1.5 813,381 - -1.5 813,381 - -1.9 813,381 - -1.4 813,381 - -2.9 813,381 - -0.4 813,381 - +0.4 813,381 - -1.8 813,381 - -1.5 813,386 + +0.7 813,427 + +0.0 813,442 + -0.2 813,450 - +2.4 813,450 - -0.4 813,452 + -0.7 813,464 + -2.8 813,470 + +0.0 813,484 - +0.3 813,497 - CCNA_00755 0.12 +0.8 813,549 + CCNA_00755 0.24 -2.3 813,549 + CCNA_00755 0.24 +0.4 813,557 - CCNA_00755 0.26 +1.1 813,562 + CCNA_00755 0.27 -1.5 813,562 - CCNA_00755 0.27 +0.0 813,569 + CCNA_00755 0.28 +0.5 813,602 + CCNA_00755 0.36 +0.6 813,610 - CCNA_00755 0.38 -2.2 813,621 - CCNA_00755 0.40 -1.5 813,621 - CCNA_00755 0.40 -3.7 813,621 - CCNA_00755 0.40 -0.0 813,621 - CCNA_00755 0.40 +0.0 813,626 - CCNA_00755 0.41 -2.7 813,678 + CCNA_00755 0.53 -1.3 813,678 + CCNA_00755 0.53 +0.6 813,686 - CCNA_00755 0.55 -1.7 813,686 - CCNA_00755 0.55 -1.4 813,686 - CCNA_00755 0.55 -4.0 813,691 + CCNA_00755 0.56 -1.5 813,693 + CCNA_00755 0.56 -1.2 813,693 + CCNA_00755 0.56 +0.4 813,710 - CCNA_00755 0.60 +1.0 813,866 - +1.3 813,866 - +0.3 813,866 - +6.0 813,866 - +0.3 813,879 + -1.8 813,884 + -1.7 813,913 + CCNA_00756 0.25 -2.6 813,916 - CCNA_00756 0.27 +0.2 814,011 - CCNA_00756 0.61 +2.1 814,013 + CCNA_00756 0.61 -2.3 814,044 - CCNA_00756 0.72 +2.1 814,044 - CCNA_00756 0.72 +2.3 814,044 - CCNA_00756 0.72 +1.7 814,044 - CCNA_00756 0.72 +2.1 814,074 + CCNA_00756 0.83 +0.3 814,126 - +0.9 814,146 + +1.2 814,148 - +1.3 814,164 + +0.8 814,164 + -0.4 814,172 - +2.1 814,172 - +1.4 814,181 - +1.7 814,212 + +1.0 814,253 + -0.1 814,259 - -2.4 814,259 - +1.6 814,325 + -0.4 814,331 + -0.5 814,331 + +4.2 814,331 + -1.1 814,339 - +3.4 814,339 - +0.0 814,339 - +0.6 814,374 + CCNA_00757 0.11 +1.0 814,374 + CCNA_00757 0.11 +1.3 814,415 - CCNA_00757 0.15 -0.8 814,421 - CCNA_00757 0.16 -0.4 814,493 - CCNA_00757 0.22 +0.3 814,495 + CCNA_00757 0.23 +1.6 814,498 - CCNA_00757 0.23 -1.7 814,498 - CCNA_00757 0.23 -0.4 814,503 - CCNA_00757 0.23 +0.3 814,503 - CCNA_00757 0.23 -1.1 814,503 - CCNA_00757 0.23 +0.8 814,508 + CCNA_00757 0.24 +1.0 814,516 + CCNA_00757 0.25 +1.6 814,523 + CCNA_00757 0.25 +2.6 814,530 + CCNA_00757 0.26 +2.2 814,559 + CCNA_00757 0.29 +0.3 814,559 + CCNA_00757 0.29 +2.6 814,559 + CCNA_00757 0.29 -0.7 814,559 + CCNA_00757 0.29 -1.0 814,559 + CCNA_00757 0.29 +0.6 814,567 - CCNA_00757 0.29 +0.8 814,567 - CCNA_00757 0.29 -1.4 814,567 - CCNA_00757 0.29 +1.6 814,567 - CCNA_00757 0.29 +4.6 814,567 - CCNA_00757 0.29 +2.0 814,567 - CCNA_00757 0.29 -0.5 814,567 - CCNA_00757 0.29 -1.5 814,567 - CCNA_00757 0.29 -1.0 814,567 - CCNA_00757 0.29 -2.0 814,567 - CCNA_00757 0.29 +3.5 814,567 - CCNA_00757 0.29 -2.0 814,602 - CCNA_00757 0.33 +2.6 814,624 + CCNA_00757 0.35 -0.7 814,631 - CCNA_00757 0.35 +2.6 814,739 - CCNA_00757 0.46 -0.7 814,825 + CCNA_00757 0.54 +2.6 814,833 - CCNA_00757 0.54 +0.3
Or see this region's nucleotide sequence