Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00416

Experiment: PYE 4C survival rep1 28 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00415 and CCNA_00416 are separated by 140 nucleotidesCCNA_00416 and CCNA_00417 are separated by 3 nucleotidesCCNA_00417 and CCNA_00419 are separated by 234 nucleotides CCNA_00415: CCNA_00415 - hypothetical protein, at 428,613 to 429,584 _00415 CCNA_00416: CCNA_00416 - hypothetical protein, at 429,725 to 430,123 _00416 CCNA_00417: CCNA_00417 - hypothetical protein, at 430,127 to 430,498 _00417 CCNA_00419: CCNA_00419 - fasciclin domain cell surface protein, at 430,733 to 431,269 _00419 Position (kb) 429 430 431Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 428.774 kb on + strand, within CCNA_00415at 428.779 kb on + strand, within CCNA_00415at 428.786 kb on + strand, within CCNA_00415at 428.860 kb on + strand, within CCNA_00415at 428.885 kb on - strand, within CCNA_00415at 428.898 kb on - strand, within CCNA_00415at 428.975 kb on - strand, within CCNA_00415at 428.976 kb on + strand, within CCNA_00415at 428.976 kb on + strand, within CCNA_00415at 428.976 kb on + strand, within CCNA_00415at 428.984 kb on - strand, within CCNA_00415at 428.984 kb on - strand, within CCNA_00415at 428.984 kb on - strand, within CCNA_00415at 428.984 kb on - strand, within CCNA_00415at 428.995 kb on + strand, within CCNA_00415at 429.000 kb on + strand, within CCNA_00415at 429.003 kb on - strand, within CCNA_00415at 429.008 kb on - strand, within CCNA_00415at 429.012 kb on + strand, within CCNA_00415at 429.020 kb on - strand, within CCNA_00415at 429.030 kb on - strand, within CCNA_00415at 429.031 kb on - strand, within CCNA_00415at 429.032 kb on + strand, within CCNA_00415at 429.062 kb on - strand, within CCNA_00415at 429.113 kb on + strand, within CCNA_00415at 429.179 kb on - strand, within CCNA_00415at 429.179 kb on - strand, within CCNA_00415at 429.206 kb on - strand, within CCNA_00415at 429.266 kb on - strand, within CCNA_00415at 429.269 kb on - strand, within CCNA_00415at 429.329 kb on + strand, within CCNA_00415at 429.336 kb on + strand, within CCNA_00415at 429.355 kb on + strand, within CCNA_00415at 429.407 kb on - strand, within CCNA_00415at 429.452 kb on + strand, within CCNA_00415at 429.475 kb on + strand, within CCNA_00415at 429.492 kb on - strandat 429.499 kb on + strandat 429.526 kb on - strandat 429.550 kb on + strandat 429.553 kb on - strandat 429.564 kb on + strandat 429.579 kb on + strandat 429.579 kb on + strandat 429.579 kb on + strandat 429.587 kb on - strandat 429.587 kb on - strandat 429.587 kb on - strandat 429.602 kb on - strandat 429.618 kb on - strandat 429.645 kb on - strandat 429.663 kb on - strandat 429.677 kb on - strandat 429.708 kb on + strandat 429.716 kb on - strandat 429.731 kb on - strandat 429.735 kb on - strandat 429.779 kb on - strand, within CCNA_00416at 429.827 kb on - strand, within CCNA_00416at 429.845 kb on + strand, within CCNA_00416at 429.872 kb on + strand, within CCNA_00416at 429.907 kb on - strand, within CCNA_00416at 429.917 kb on - strand, within CCNA_00416at 429.929 kb on - strand, within CCNA_00416at 429.931 kb on + strand, within CCNA_00416at 429.931 kb on + strand, within CCNA_00416at 429.956 kb on + strand, within CCNA_00416at 429.961 kb on - strand, within CCNA_00416at 429.961 kb on - strand, within CCNA_00416at 429.962 kb on - strand, within CCNA_00416at 429.962 kb on - strand, within CCNA_00416at 429.974 kb on - strand, within CCNA_00416at 429.974 kb on - strand, within CCNA_00416at 429.976 kb on + strand, within CCNA_00416at 429.976 kb on + strand, within CCNA_00416at 429.984 kb on - strand, within CCNA_00416at 430.009 kb on - strand, within CCNA_00416at 430.025 kb on + strand, within CCNA_00416at 430.025 kb on + strand, within CCNA_00416at 430.033 kb on - strand, within CCNA_00416at 430.051 kb on - strand, within CCNA_00416at 430.066 kb on - strand, within CCNA_00416at 430.067 kb on - strand, within CCNA_00416at 430.074 kb on + strand, within CCNA_00416at 430.081 kb on - strand, within CCNA_00416at 430.085 kb on + strandat 430.103 kb on + strandat 430.124 kb on + strandat 430.132 kb on - strandat 430.133 kb on - strandat 430.133 kb on - strandat 430.147 kb on + strandat 430.147 kb on - strandat 430.147 kb on - strandat 430.152 kb on + strandat 430.152 kb on + strandat 430.152 kb on + strandat 430.157 kb on + strandat 430.160 kb on - strandat 430.160 kb on - strandat 430.160 kb on - strandat 430.160 kb on - strandat 430.160 kb on - strandat 430.160 kb on - strandat 430.207 kb on + strand, within CCNA_00417at 430.207 kb on + strand, within CCNA_00417at 430.207 kb on - strand, within CCNA_00417at 430.209 kb on - strand, within CCNA_00417at 430.249 kb on - strand, within CCNA_00417at 430.256 kb on + strand, within CCNA_00417at 430.263 kb on + strand, within CCNA_00417at 430.263 kb on + strandat 430.266 kb on - strand, within CCNA_00417at 430.269 kb on - strand, within CCNA_00417at 430.271 kb on - strand, within CCNA_00417at 430.299 kb on - strand, within CCNA_00417at 430.315 kb on + strand, within CCNA_00417at 430.319 kb on - strand, within CCNA_00417at 430.361 kb on + strand, within CCNA_00417at 430.374 kb on - strand, within CCNA_00417at 430.385 kb on + strand, within CCNA_00417at 430.436 kb on + strand, within CCNA_00417at 430.436 kb on + strand, within CCNA_00417at 430.444 kb on - strand, within CCNA_00417at 430.486 kb on - strandat 430.501 kb on - strandat 430.510 kb on + strandat 430.548 kb on - strandat 430.577 kb on + strandat 430.664 kb on + strandat 430.672 kb on - strandat 430.679 kb on + strandat 430.697 kb on - strandat 430.697 kb on - strandat 430.697 kb on - strandat 430.704 kb on + strandat 430.723 kb on + strandat 430.728 kb on + strandat 430.740 kb on + strandat 430.753 kb on - strandat 430.793 kb on + strand, within CCNA_00419at 430.813 kb on + strand, within CCNA_00419at 430.823 kb on + strand, within CCNA_00419at 430.861 kb on + strand, within CCNA_00419at 430.863 kb on + strand, within CCNA_00419at 430.876 kb on - strand, within CCNA_00419at 430.898 kb on - strand, within CCNA_00419at 430.900 kb on + strand, within CCNA_00419at 430.900 kb on + strand, within CCNA_00419at 430.900 kb on + strand, within CCNA_00419at 430.905 kb on + strand, within CCNA_00419at 430.908 kb on - strand, within CCNA_00419at 430.912 kb on + strand, within CCNA_00419at 430.927 kb on + strand, within CCNA_00419at 430.935 kb on - strand, within CCNA_00419at 430.977 kb on + strand, within CCNA_00419at 430.977 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.989 kb on + strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 431.005 kb on + strand, within CCNA_00419at 431.013 kb on - strand, within CCNA_00419at 431.027 kb on + strand, within CCNA_00419at 431.027 kb on + strand, within CCNA_00419at 431.035 kb on - strand, within CCNA_00419at 431.035 kb on - strand, within CCNA_00419at 431.047 kb on + strand, within CCNA_00419at 431.056 kb on + strand, within CCNA_00419at 431.063 kb on + strand, within CCNA_00419at 431.068 kb on + strand, within CCNA_00419at 431.069 kb on + strand, within CCNA_00419at 431.077 kb on - strand, within CCNA_00419at 431.084 kb on + strand, within CCNA_00419at 431.092 kb on - strand, within CCNA_00419at 431.116 kb on - strand, within CCNA_00419

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep1 28 days
remove
428,774 + CCNA_00415 0.17 -1.4
428,779 + CCNA_00415 0.17 +0.1
428,786 + CCNA_00415 0.18 +0.1
428,860 + CCNA_00415 0.25 +5.6
428,885 - CCNA_00415 0.28 -0.3
428,898 - CCNA_00415 0.29 +2.1
428,975 - CCNA_00415 0.37 +0.4
428,976 + CCNA_00415 0.37 +0.6
428,976 + CCNA_00415 0.37 -2.4
428,976 + CCNA_00415 0.37 +0.3
428,984 - CCNA_00415 0.38 -3.0
428,984 - CCNA_00415 0.38 +0.8
428,984 - CCNA_00415 0.38 +0.7
428,984 - CCNA_00415 0.38 +1.1
428,995 + CCNA_00415 0.39 +0.8
429,000 + CCNA_00415 0.40 -1.3
429,003 - CCNA_00415 0.40 +1.2
429,008 - CCNA_00415 0.41 -0.7
429,012 + CCNA_00415 0.41 +0.3
429,020 - CCNA_00415 0.42 +0.5
429,030 - CCNA_00415 0.43 +0.9
429,031 - CCNA_00415 0.43 -1.1
429,032 + CCNA_00415 0.43 -1.4
429,062 - CCNA_00415 0.46 -1.9
429,113 + CCNA_00415 0.51 -1.8
429,179 - CCNA_00415 0.58 +0.9
429,179 - CCNA_00415 0.58 +0.6
429,206 - CCNA_00415 0.61 -0.1
429,266 - CCNA_00415 0.67 -2.5
429,269 - CCNA_00415 0.67 -0.3
429,329 + CCNA_00415 0.74 -1.7
429,336 + CCNA_00415 0.74 +0.6
429,355 + CCNA_00415 0.76 -1.6
429,407 - CCNA_00415 0.82 +1.3
429,452 + CCNA_00415 0.86 -2.3
429,475 + CCNA_00415 0.89 -2.3
429,492 - -3.5
429,499 + -1.5
429,526 - +0.8
429,550 + -1.2
429,553 - -0.3
429,564 + +0.2
429,579 + -0.2
429,579 + +2.1
429,579 + -0.6
429,587 - -0.6
429,587 - -1.9
429,587 - +1.0
429,602 - +0.5
429,618 - +0.4
429,645 - -2.4
429,663 - +3.2
429,677 - -0.2
429,708 + -2.1
429,716 - +0.6
429,731 - +1.2
429,735 - +0.7
429,779 - CCNA_00416 0.14 -2.9
429,827 - CCNA_00416 0.26 -2.7
429,845 + CCNA_00416 0.30 -1.5
429,872 + CCNA_00416 0.37 -1.9
429,907 - CCNA_00416 0.46 -2.7
429,917 - CCNA_00416 0.48 +1.1
429,929 - CCNA_00416 0.51 -2.5
429,931 + CCNA_00416 0.52 -2.4
429,931 + CCNA_00416 0.52 -1.6
429,956 + CCNA_00416 0.58 +1.4
429,961 - CCNA_00416 0.59 +0.6
429,961 - CCNA_00416 0.59 -0.8
429,962 - CCNA_00416 0.59 +0.4
429,962 - CCNA_00416 0.59 -1.3
429,974 - CCNA_00416 0.62 -2.4
429,974 - CCNA_00416 0.62 +2.9
429,976 + CCNA_00416 0.63 -0.2
429,976 + CCNA_00416 0.63 +1.7
429,984 - CCNA_00416 0.65 -2.7
430,009 - CCNA_00416 0.71 -1.2
430,025 + CCNA_00416 0.75 -0.4
430,025 + CCNA_00416 0.75 -2.9
430,033 - CCNA_00416 0.77 -0.4
430,051 - CCNA_00416 0.82 -2.7
430,066 - CCNA_00416 0.85 +2.0
430,067 - CCNA_00416 0.86 -1.9
430,074 + CCNA_00416 0.87 +0.1
430,081 - CCNA_00416 0.89 -1.5
430,085 + +1.0
430,103 + -3.4
430,124 + +0.4
430,132 - -0.8
430,133 - -1.2
430,133 - +0.6
430,147 + -3.9
430,147 - +0.6
430,147 - -0.2
430,152 + -2.8
430,152 + -2.8
430,152 + -1.9
430,157 + -0.8
430,160 - -3.2
430,160 - -0.1
430,160 - -1.5
430,160 - +0.8
430,160 - +1.4
430,160 - -1.2
430,207 + CCNA_00417 0.22 -1.9
430,207 + CCNA_00417 0.22 -1.3
430,207 - CCNA_00417 0.22 -1.3
430,209 - CCNA_00417 0.22 +0.1
430,249 - CCNA_00417 0.33 +0.2
430,256 + CCNA_00417 0.35 -3.9
430,263 + CCNA_00417 0.37 -3.4
430,263 + -1.9
430,266 - CCNA_00417 0.37 -1.0
430,269 - CCNA_00417 0.38 -1.2
430,271 - CCNA_00417 0.39 -0.4
430,299 - CCNA_00417 0.46 -0.7
430,315 + CCNA_00417 0.51 -0.8
430,319 - CCNA_00417 0.52 +1.3
430,361 + CCNA_00417 0.63 -0.5
430,374 - CCNA_00417 0.66 +0.1
430,385 + CCNA_00417 0.69 +1.3
430,436 + CCNA_00417 0.83 -2.5
430,436 + CCNA_00417 0.83 -0.6
430,444 - CCNA_00417 0.85 -0.9
430,486 - -0.1
430,501 - -1.6
430,510 + -2.0
430,548 - +2.6
430,577 + -2.3
430,664 + -0.3
430,672 - -1.6
430,679 + -0.6
430,697 - +0.4
430,697 - -0.4
430,697 - +0.1
430,704 + -0.8
430,723 + +0.4
430,728 + -1.7
430,740 + -1.5
430,753 - -0.4
430,793 + CCNA_00419 0.11 -0.6
430,813 + CCNA_00419 0.15 -1.1
430,823 + CCNA_00419 0.17 -0.4
430,861 + CCNA_00419 0.24 +0.3
430,863 + CCNA_00419 0.24 +0.4
430,876 - CCNA_00419 0.27 -2.6
430,898 - CCNA_00419 0.31 -1.7
430,900 + CCNA_00419 0.31 +0.9
430,900 + CCNA_00419 0.31 -0.2
430,900 + CCNA_00419 0.31 +1.7
430,905 + CCNA_00419 0.32 -2.7
430,908 - CCNA_00419 0.33 -2.5
430,912 + CCNA_00419 0.33 +1.5
430,927 + CCNA_00419 0.36 -0.5
430,935 - CCNA_00419 0.38 -2.1
430,977 + CCNA_00419 0.45 +0.8
430,977 + CCNA_00419 0.45 +0.5
430,982 + CCNA_00419 0.46 -2.4
430,982 + CCNA_00419 0.46 -0.6
430,982 + CCNA_00419 0.46 -0.1
430,982 + CCNA_00419 0.46 +0.8
430,982 + CCNA_00419 0.46 -0.6
430,982 + CCNA_00419 0.46 -0.3
430,989 + CCNA_00419 0.48 +1.9
430,990 - CCNA_00419 0.48 -0.4
430,990 - CCNA_00419 0.48 -0.4
430,990 - CCNA_00419 0.48 -1.2
430,990 - CCNA_00419 0.48 -0.6
430,990 - CCNA_00419 0.48 +0.7
430,990 - CCNA_00419 0.48 -1.5
430,990 - CCNA_00419 0.48 -1.0
430,990 - CCNA_00419 0.48 -2.7
430,990 - CCNA_00419 0.48 -3.2
431,005 + CCNA_00419 0.51 -3.7
431,013 - CCNA_00419 0.52 -3.0
431,027 + CCNA_00419 0.55 -0.1
431,027 + CCNA_00419 0.55 -1.4
431,035 - CCNA_00419 0.56 +0.4
431,035 - CCNA_00419 0.56 -3.4
431,047 + CCNA_00419 0.58 +1.3
431,056 + CCNA_00419 0.60 +0.1
431,063 + CCNA_00419 0.61 +1.3
431,068 + CCNA_00419 0.62 -0.2
431,069 + CCNA_00419 0.63 -0.9
431,077 - CCNA_00419 0.64 -2.9
431,084 + CCNA_00419 0.65 +1.3
431,092 - CCNA_00419 0.67 +1.3
431,116 - CCNA_00419 0.71 +3.8

Or see this region's nucleotide sequence