Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3968

Experiment: Varel_Bryant medium with Dimethyl Sulfoxide 2 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant medium with Dimethyl Sulfoxide 2 vol%
5,163,858	+		BT3967	0.16	+0.0
5,163,936	-		BT3967	0.23	-1.3
5,163,947	+		BT3967	0.24	+2.0
5,163,989	+		BT3967	0.28	-0.0
5,163,995	+		BT3967	0.29	-1.2
5,163,996	-		BT3967	0.29	-1.3
5,164,012	+		BT3967	0.31	+1.0
5,164,045	-		BT3967	0.34	-0.6
5,164,108	+		BT3967	0.40	+1.0
5,164,109	-		BT3967	0.40	-0.6
5,164,109	-		BT3967	0.40	-0.8
5,164,111	-		BT3967	0.40	-1.3
5,164,111	-		BT3967	0.40	-1.3
5,164,139	-		BT3967	0.42	-2.6
5,164,140	+		BT3967	0.43	-1.2
5,164,233	-		BT3967	0.51	-0.0
5,164,312	-		BT3967	0.59	-1.8
5,164,553	+		BT3967	0.82	-1.1
5,164,601	-		BT3967	0.86	-1.6
5,164,717	-				+0.0
5,164,720	+				-0.8
5,164,721	-				-0.4
5,164,726	+				-0.2
5,164,726	+				-0.4
5,164,743	-				-0.8
5,164,759	-				-1.3
5,164,776	+				+0.4
5,164,776	+				-1.5
5,164,777	-				-1.4
5,164,838	+				+1.0
5,164,839	-				-1.6
5,164,886	-				-1.7
5,165,001	+		BT3968	0.21	-1.6
5,165,021	+		BT3968	0.23	-2.3
5,165,025	+		BT3968	0.23	-0.6
5,165,053	-		BT3968	0.26	-0.2
5,165,106	+		BT3968	0.32	-4.0
5,165,364	-		BT3968	0.60	-0.6
5,165,444	-		BT3968	0.68	-1.4
5,165,723	+				+0.4
5,165,729	-				-2.0
5,165,752	-				-1.6
5,165,758	+				-0.7
5,165,779	+				-1.4
5,165,779	+				-0.4
5,165,780	-				-1.2
5,165,825	-				+0.0
5,165,858	+				-1.5
5,165,919	+				-0.5
5,165,919	+				+2.6
5,165,919	+				-1.6
5,165,919	+				-0.3
5,165,920	-				+1.4
5,166,010	+				-1.0
5,166,227	+				+0.4
5,166,228	-				+0.5
5,166,229	+				+2.6
5,166,229	+				-0.7
5,166,230	-				+1.0
5,166,235	-				-2.1
5,166,268	-		BT3969	0.10	-0.6
5,166,353	+		BT3969	0.12	-1.0
5,166,355	+		BT3969	0.12	-0.8
5,166,532	+		BT3969	0.16	-0.7
5,166,586	+		BT3969	0.18	-0.2
5,166,587	-		BT3969	0.18	+0.7
5,166,587	-		BT3969	0.18	-1.2
5,166,611	-		BT3969	0.18	+0.0
5,166,611	-		BT3969	0.18	-1.4
5,166,617	-		BT3969	0.18	-0.6
5,166,617	-		BT3969	0.18	-1.8
5,166,618	+		BT3969	0.18	-1.3
5,166,619	+		BT3969	0.18	-1.0
5,166,677	-		BT3969	0.20	+0.0