Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2932

Experiment: Pyruvate-Sulfate (60-15mM) with Chromate 50uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2931 and DVU2932 are separated by 33 nucleotidesDVU2932 and DVU2933 are separated by 11 nucleotides DVU2931: DVU2931 - sensory box histidine kinase (TIGR), at 3,034,225 to 3,036,426 DVU2931 DVU2932: DVU2932 - conserved hypothetical protein TIGR01777 (TIGR), at 3,036,460 to 3,037,386 DVU2932 DVU2933: DVU2933 - response regulator/sensory box/HDIG domain protein (TIGR), at 3,037,398 to 3,038,774 DVU2933 Position (kb) 3036 3037 3038Strain fitness (log2 ratio) -3 -2 -1 0 1at 3036.436 kb on + strandat 3036.565 kb on - strand, within DVU2932at 3036.614 kb on + strand, within DVU2932at 3036.661 kb on + strand, within DVU2932at 3036.712 kb on + strand, within DVU2932at 3036.802 kb on + strand, within DVU2932at 3036.836 kb on + strand, within DVU2932at 3036.853 kb on + strand, within DVU2932at 3036.939 kb on + strand, within DVU2932at 3037.057 kb on + strand, within DVU2932at 3037.194 kb on + strand, within DVU2932at 3037.194 kb on + strand, within DVU2932at 3037.197 kb on - strand, within DVU2932at 3037.201 kb on + strand, within DVU2932at 3037.206 kb on + strand, within DVU2932at 3037.206 kb on + strand, within DVU2932at 3037.209 kb on - strand, within DVU2932at 3037.209 kb on - strand, within DVU2932at 3037.209 kb on - strand, within DVU2932at 3037.300 kb on - strandat 3037.400 kb on - strandat 3037.459 kb on + strandat 3037.652 kb on - strand, within DVU2933at 3037.653 kb on + strand, within DVU2933at 3037.802 kb on + strand, within DVU2933at 3037.856 kb on + strand, within DVU2933at 3037.896 kb on + strand, within DVU2933at 3037.896 kb on + strand, within DVU2933at 3037.939 kb on + strand, within DVU2933at 3037.945 kb on - strand, within DVU2933at 3037.979 kb on - strand, within DVU2933at 3038.127 kb on + strand, within DVU2933at 3038.230 kb on + strand, within DVU2933at 3038.280 kb on + strand, within DVU2933at 3038.280 kb on + strand, within DVU2933at 3038.343 kb on - strand, within DVU2933at 3038.355 kb on + strand, within DVU2933at 3038.363 kb on - strand, within DVU2933

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Chromate 50uM
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3,036,436 + +0.0
3,036,565 - DVU2932 0.11 +0.2
3,036,614 + DVU2932 0.17 -2.3
3,036,661 + DVU2932 0.22 -3.1
3,036,712 + DVU2932 0.27 -1.5
3,036,802 + DVU2932 0.37 -1.6
3,036,836 + DVU2932 0.41 -2.0
3,036,853 + DVU2932 0.42 -1.9
3,036,939 + DVU2932 0.52 -1.4
3,037,057 + DVU2932 0.64 -2.2
3,037,194 + DVU2932 0.79 -0.5
3,037,194 + DVU2932 0.79 -1.1
3,037,197 - DVU2932 0.80 -2.2
3,037,201 + DVU2932 0.80 -1.0
3,037,206 + DVU2932 0.80 -1.2
3,037,206 + DVU2932 0.80 -0.7
3,037,209 - DVU2932 0.81 +0.1
3,037,209 - DVU2932 0.81 -2.4
3,037,209 - DVU2932 0.81 -3.2
3,037,300 - -2.1
3,037,400 - -1.8
3,037,459 + -2.1
3,037,652 - DVU2933 0.18 -2.2
3,037,653 + DVU2933 0.19 -2.6
3,037,802 + DVU2933 0.29 -2.2
3,037,856 + DVU2933 0.33 -1.1
3,037,896 + DVU2933 0.36 -1.6
3,037,896 + DVU2933 0.36 -0.5
3,037,939 + DVU2933 0.39 -2.8
3,037,945 - DVU2933 0.40 -1.9
3,037,979 - DVU2933 0.42 -1.8
3,038,127 + DVU2933 0.53 -1.7
3,038,230 + DVU2933 0.60 +0.2
3,038,280 + DVU2933 0.64 -2.3
3,038,280 + DVU2933 0.64 -1.4
3,038,343 - DVU2933 0.69 -3.3
3,038,355 + DVU2933 0.69 -1.1
3,038,363 - DVU2933 0.70 -2.0

Or see this region's nucleotide sequence