Experiment: Tetracycline 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4049 and Pf6N2E2_4050 overlap by 28 nucleotides Pf6N2E2_4050 and Pf6N2E2_4051 are separated by 155 nucleotides Pf6N2E2_4051 and Pf6N2E2_4052 are separated by 115 nucleotides Pf6N2E2_4052 and Pf6N2E2_4053 are separated by 54 nucleotides
Pf6N2E2_4049 - Glycine cleavage system transcriptional activator, at 4,730,275 to 4,731,192
_4049
Pf6N2E2_4050 - FIG00953718: hypothetical protein, at 4,731,165 to 4,731,491
_4050
Pf6N2E2_4051 - Dodecin (COG3360) Flavin-binding, at 4,731,647 to 4,731,862
_4051
Pf6N2E2_4052 - FIG00955481: hypothetical protein, at 4,731,978 to 4,732,199
_4052
Pf6N2E2_4053 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases, at 4,732,254 to 4,733,255
_4053
Position (kb)
4731
4732 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4730.207 kb on + strand at 4730.207 kb on + strand at 4730.208 kb on - strand at 4730.208 kb on - strand at 4730.343 kb on - strand at 4730.384 kb on + strand, within Pf6N2E2_4049 at 4730.385 kb on - strand, within Pf6N2E2_4049 at 4730.601 kb on + strand, within Pf6N2E2_4049 at 4730.602 kb on - strand, within Pf6N2E2_4049 at 4730.602 kb on - strand, within Pf6N2E2_4049 at 4730.711 kb on + strand, within Pf6N2E2_4049 at 4730.711 kb on + strand, within Pf6N2E2_4049 at 4730.749 kb on + strand, within Pf6N2E2_4049 at 4730.749 kb on + strand, within Pf6N2E2_4049 at 4730.749 kb on + strand, within Pf6N2E2_4049 at 4730.749 kb on + strand, within Pf6N2E2_4049 at 4730.750 kb on - strand, within Pf6N2E2_4049 at 4730.750 kb on - strand, within Pf6N2E2_4049 at 4730.750 kb on - strand, within Pf6N2E2_4049 at 4730.795 kb on - strand, within Pf6N2E2_4049 at 4730.953 kb on + strand, within Pf6N2E2_4049 at 4730.953 kb on + strand, within Pf6N2E2_4049 at 4730.954 kb on - strand, within Pf6N2E2_4049 at 4730.954 kb on - strand, within Pf6N2E2_4049 at 4730.954 kb on - strand, within Pf6N2E2_4049 at 4730.954 kb on - strand, within Pf6N2E2_4049 at 4730.954 kb on - strand, within Pf6N2E2_4049 at 4730.954 kb on - strand, within Pf6N2E2_4049 at 4730.956 kb on + strand, within Pf6N2E2_4049 at 4730.956 kb on + strand, within Pf6N2E2_4049 at 4730.956 kb on + strand, within Pf6N2E2_4049 at 4730.957 kb on - strand, within Pf6N2E2_4049 at 4730.957 kb on - strand, within Pf6N2E2_4049 at 4730.957 kb on - strand, within Pf6N2E2_4049 at 4731.190 kb on + strand at 4731.190 kb on + strand at 4731.190 kb on + strand at 4731.190 kb on + strand at 4731.190 kb on + strand at 4731.190 kb on + strand at 4731.191 kb on - strand at 4731.191 kb on - strand at 4731.191 kb on - strand at 4731.191 kb on - strand at 4731.256 kb on + strand, within Pf6N2E2_4050 at 4731.308 kb on - strand, within Pf6N2E2_4050 at 4731.308 kb on - strand, within Pf6N2E2_4050 at 4731.380 kb on + strand, within Pf6N2E2_4050 at 4731.562 kb on - strand at 4731.597 kb on + strand at 4731.597 kb on + strand at 4731.597 kb on + strand at 4731.597 kb on + strand at 4731.597 kb on + strand at 4731.597 kb on + strand at 4731.597 kb on + strand at 4731.597 kb on + strand at 4731.597 kb on + strand at 4731.597 kb on + strand at 4731.597 kb on + strand at 4731.597 kb on + strand at 4731.598 kb on - strand at 4731.598 kb on - strand at 4731.598 kb on - strand at 4731.598 kb on - strand at 4731.598 kb on - strand at 4731.616 kb on + strand at 4731.616 kb on + strand at 4731.616 kb on + strand at 4731.616 kb on + strand at 4731.617 kb on - strand at 4731.617 kb on - strand at 4731.617 kb on - strand at 4731.617 kb on - strand at 4731.617 kb on - strand at 4731.665 kb on + strand at 4731.666 kb on - strand at 4731.856 kb on + strand at 4731.856 kb on + strand at 4731.856 kb on + strand at 4731.856 kb on + strand at 4731.857 kb on - strand at 4731.857 kb on - strand at 4731.857 kb on - strand at 4731.857 kb on - strand at 4731.896 kb on + strand at 4731.914 kb on + strand at 4731.920 kb on - strand at 4731.920 kb on - strand at 4731.920 kb on - strand at 4731.941 kb on + strand at 4731.942 kb on - strand at 4731.994 kb on + strand at 4731.995 kb on - strand at 4732.153 kb on + strand, within Pf6N2E2_4052 at 4732.286 kb on - strand at 4732.286 kb on - strand at 4732.286 kb on - strand at 4732.286 kb on - strand at 4732.286 kb on - strand at 4732.312 kb on + strand at 4732.313 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0002 mg/ml remove 4,730,207 + +0.3 4,730,207 + -0.5 4,730,208 - -0.2 4,730,208 - +0.2 4,730,343 - +0.8 4,730,384 + Pf6N2E2_4049 0.12 +0.5 4,730,385 - Pf6N2E2_4049 0.12 +0.6 4,730,601 + Pf6N2E2_4049 0.36 -0.3 4,730,602 - Pf6N2E2_4049 0.36 -0.0 4,730,602 - Pf6N2E2_4049 0.36 -0.7 4,730,711 + Pf6N2E2_4049 0.47 +0.7 4,730,711 + Pf6N2E2_4049 0.47 +0.9 4,730,749 + Pf6N2E2_4049 0.52 -0.3 4,730,749 + Pf6N2E2_4049 0.52 -0.1 4,730,749 + Pf6N2E2_4049 0.52 -0.7 4,730,749 + Pf6N2E2_4049 0.52 -0.5 4,730,750 - Pf6N2E2_4049 0.52 -0.3 4,730,750 - Pf6N2E2_4049 0.52 +0.1 4,730,750 - Pf6N2E2_4049 0.52 +0.3 4,730,795 - Pf6N2E2_4049 0.57 -0.4 4,730,953 + Pf6N2E2_4049 0.74 +0.4 4,730,953 + Pf6N2E2_4049 0.74 +0.8 4,730,954 - Pf6N2E2_4049 0.74 -0.2 4,730,954 - Pf6N2E2_4049 0.74 -0.2 4,730,954 - Pf6N2E2_4049 0.74 -0.0 4,730,954 - Pf6N2E2_4049 0.74 +0.2 4,730,954 - Pf6N2E2_4049 0.74 -0.0 4,730,954 - Pf6N2E2_4049 0.74 +0.2 4,730,956 + Pf6N2E2_4049 0.74 +0.7 4,730,956 + Pf6N2E2_4049 0.74 +0.2 4,730,956 + Pf6N2E2_4049 0.74 -0.5 4,730,957 - Pf6N2E2_4049 0.74 +1.0 4,730,957 - Pf6N2E2_4049 0.74 +0.7 4,730,957 - Pf6N2E2_4049 0.74 +0.7 4,731,190 + -0.3 4,731,190 + +0.3 4,731,190 + +0.9 4,731,190 + -0.4 4,731,190 + -0.2 4,731,190 + -0.6 4,731,191 - +0.2 4,731,191 - +0.9 4,731,191 - +0.3 4,731,191 - +0.0 4,731,256 + Pf6N2E2_4050 0.28 -0.7 4,731,308 - Pf6N2E2_4050 0.44 -0.4 4,731,308 - Pf6N2E2_4050 0.44 -0.4 4,731,380 + Pf6N2E2_4050 0.66 -0.1 4,731,562 - +0.6 4,731,597 + -2.1 4,731,597 + +0.0 4,731,597 + +0.0 4,731,597 + +0.2 4,731,597 + +0.5 4,731,597 + -0.2 4,731,597 + +0.2 4,731,597 + +0.4 4,731,597 + +1.2 4,731,597 + -1.3 4,731,597 + +0.4 4,731,597 + -0.7 4,731,598 - -0.4 4,731,598 - -0.1 4,731,598 - +0.0 4,731,598 - +0.3 4,731,598 - +0.9 4,731,616 + +0.2 4,731,616 + -1.0 4,731,616 + -0.1 4,731,616 + +0.7 4,731,617 - -0.3 4,731,617 - -0.8 4,731,617 - +0.8 4,731,617 - +0.9 4,731,617 - +0.1 4,731,665 + -0.5 4,731,666 - +0.1 4,731,856 + +0.3 4,731,856 + -0.2 4,731,856 + +0.3 4,731,856 + +1.9 4,731,857 - +0.7 4,731,857 - +0.9 4,731,857 - +0.8 4,731,857 - +0.5 4,731,896 + +0.4 4,731,914 + -0.2 4,731,920 - -0.7 4,731,920 - -0.6 4,731,920 - -0.7 4,731,941 + +0.5 4,731,942 - +0.1 4,731,994 + +0.3 4,731,995 - -0.3 4,732,153 + Pf6N2E2_4052 0.79 +0.1 4,732,286 - +0.2 4,732,286 - +0.6 4,732,286 - +0.9 4,732,286 - +0.5 4,732,286 - -0.0 4,732,312 + +0.5 4,732,313 - +0.2
Or see this region's nucleotide sequence