Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3574

Experiment: Tetracycline 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3572 and Pf6N2E2_3573 are separated by 31 nucleotidesPf6N2E2_3573 and Pf6N2E2_3574 are separated by 184 nucleotidesPf6N2E2_3574 and Pf6N2E2_3575 are separated by 138 nucleotides Pf6N2E2_3572 - Urease accessory protein UreG, at 4,162,800 to 4,163,414 _3572 Pf6N2E2_3573 - HupE-UreJ family metal transporter, at 4,163,446 to 4,164,018 _3573 Pf6N2E2_3574 - Mannose-6-phosphate isomerase (EC 5.3.1.8), at 4,164,203 to 4,165,336 _3574 Pf6N2E2_3575 - Oxidoreductase, short chain dehydrogenase/reductase family, at 4,165,475 to 4,166,239 _3575 Position (kb) 4164 4165 4166Strain fitness (log2 ratio) -2 -1 0 1at 4163.246 kb on + strand, within Pf6N2E2_3572at 4163.247 kb on - strand, within Pf6N2E2_3572at 4163.333 kb on - strand, within Pf6N2E2_3572at 4163.441 kb on + strandat 4163.658 kb on + strand, within Pf6N2E2_3573at 4163.659 kb on - strand, within Pf6N2E2_3573at 4163.659 kb on - strand, within Pf6N2E2_3573at 4163.659 kb on - strand, within Pf6N2E2_3573at 4163.872 kb on + strand, within Pf6N2E2_3573at 4164.089 kb on + strandat 4164.089 kb on + strandat 4164.089 kb on + strandat 4164.090 kb on - strandat 4164.090 kb on - strandat 4164.090 kb on - strandat 4164.090 kb on - strandat 4164.160 kb on + strandat 4164.161 kb on - strandat 4164.161 kb on - strandat 4164.161 kb on - strandat 4164.161 kb on - strandat 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.521 kb on + strand, within Pf6N2E2_3574at 4164.521 kb on + strand, within Pf6N2E2_3574at 4164.521 kb on + strand, within Pf6N2E2_3574at 4164.522 kb on - strand, within Pf6N2E2_3574at 4164.569 kb on + strand, within Pf6N2E2_3574at 4164.569 kb on + strand, within Pf6N2E2_3574at 4164.570 kb on - strand, within Pf6N2E2_3574at 4164.570 kb on - strand, within Pf6N2E2_3574at 4164.570 kb on - strand, within Pf6N2E2_3574at 4164.570 kb on - strand, within Pf6N2E2_3574at 4164.570 kb on - strand, within Pf6N2E2_3574at 4164.583 kb on + strand, within Pf6N2E2_3574at 4164.698 kb on + strand, within Pf6N2E2_3574at 4164.699 kb on - strand, within Pf6N2E2_3574at 4164.712 kb on - strand, within Pf6N2E2_3574at 4164.913 kb on + strand, within Pf6N2E2_3574at 4164.947 kb on + strand, within Pf6N2E2_3574at 4164.948 kb on - strand, within Pf6N2E2_3574at 4165.133 kb on + strand, within Pf6N2E2_3574at 4165.133 kb on + strand, within Pf6N2E2_3574at 4165.134 kb on - strand, within Pf6N2E2_3574at 4165.282 kb on + strandat 4165.334 kb on + strandat 4165.334 kb on + strandat 4165.364 kb on - strandat 4165.552 kb on + strand, within Pf6N2E2_3575at 4165.552 kb on + strand, within Pf6N2E2_3575at 4165.627 kb on - strand, within Pf6N2E2_3575at 4165.638 kb on + strand, within Pf6N2E2_3575at 4165.702 kb on + strand, within Pf6N2E2_3575at 4165.785 kb on + strand, within Pf6N2E2_3575at 4165.785 kb on + strand, within Pf6N2E2_3575at 4165.786 kb on - strand, within Pf6N2E2_3575at 4165.786 kb on - strand, within Pf6N2E2_3575at 4165.786 kb on - strand, within Pf6N2E2_3575at 4165.786 kb on - strand, within Pf6N2E2_3575at 4165.810 kb on - strand, within Pf6N2E2_3575at 4165.889 kb on - strand, within Pf6N2E2_3575at 4165.893 kb on + strand, within Pf6N2E2_3575at 4165.893 kb on + strand, within Pf6N2E2_3575at 4165.893 kb on + strand, within Pf6N2E2_3575at 4165.893 kb on + strand, within Pf6N2E2_3575at 4165.893 kb on + strand, within Pf6N2E2_3575at 4165.893 kb on + strand, within Pf6N2E2_3575at 4165.893 kb on + strand, within Pf6N2E2_3575at 4165.893 kb on + strand, within Pf6N2E2_3575at 4165.894 kb on - strand, within Pf6N2E2_3575at 4165.894 kb on - strand, within Pf6N2E2_3575at 4165.894 kb on - strand, within Pf6N2E2_3575at 4165.894 kb on - strand, within Pf6N2E2_3575at 4165.894 kb on - strand, within Pf6N2E2_3575at 4166.222 kb on - strandat 4166.222 kb on - strandat 4166.222 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0002 mg/ml
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4,163,246 + Pf6N2E2_3572 0.73 +0.0
4,163,247 - Pf6N2E2_3572 0.73 +0.0
4,163,333 - Pf6N2E2_3572 0.87 -0.4
4,163,441 + +0.4
4,163,658 + Pf6N2E2_3573 0.37 -0.0
4,163,659 - Pf6N2E2_3573 0.37 +0.2
4,163,659 - Pf6N2E2_3573 0.37 -0.3
4,163,659 - Pf6N2E2_3573 0.37 +0.2
4,163,872 + Pf6N2E2_3573 0.74 -0.1
4,164,089 + +0.2
4,164,089 + +0.9
4,164,089 + +0.7
4,164,090 - +0.2
4,164,090 - -0.2
4,164,090 - -0.2
4,164,090 - +0.8
4,164,160 + +0.9
4,164,161 - +0.3
4,164,161 - +0.7
4,164,161 - -0.2
4,164,161 - -0.4
4,164,410 + Pf6N2E2_3574 0.18 -0.9
4,164,410 + Pf6N2E2_3574 0.18 -1.6
4,164,410 + Pf6N2E2_3574 0.18 -0.3
4,164,410 + Pf6N2E2_3574 0.18 -0.1
4,164,410 + Pf6N2E2_3574 0.18 -0.7
4,164,410 + Pf6N2E2_3574 0.18 -0.5
4,164,410 + Pf6N2E2_3574 0.18 -0.5
4,164,410 + Pf6N2E2_3574 0.18 -0.3
4,164,410 + Pf6N2E2_3574 0.18 -0.5
4,164,410 + Pf6N2E2_3574 0.18 +0.0
4,164,410 + Pf6N2E2_3574 0.18 -0.7
4,164,410 + Pf6N2E2_3574 0.18 -1.4
4,164,410 + Pf6N2E2_3574 0.18 -0.6
4,164,410 + Pf6N2E2_3574 0.18 -0.2
4,164,410 + Pf6N2E2_3574 0.18 +0.4
4,164,410 + Pf6N2E2_3574 0.18 -1.0
4,164,410 + Pf6N2E2_3574 0.18 +0.8
4,164,410 + Pf6N2E2_3574 0.18 -0.6
4,164,410 + Pf6N2E2_3574 0.18 +0.4
4,164,411 - Pf6N2E2_3574 0.18 -0.3
4,164,411 - Pf6N2E2_3574 0.18 -0.8
4,164,411 - Pf6N2E2_3574 0.18 -1.2
4,164,411 - Pf6N2E2_3574 0.18 +0.2
4,164,411 - Pf6N2E2_3574 0.18 -0.3
4,164,411 - Pf6N2E2_3574 0.18 -1.2
4,164,411 - Pf6N2E2_3574 0.18 -1.0
4,164,411 - Pf6N2E2_3574 0.18 -0.7
4,164,411 - Pf6N2E2_3574 0.18 +0.1
4,164,411 - Pf6N2E2_3574 0.18 -0.7
4,164,411 - Pf6N2E2_3574 0.18 -0.3
4,164,411 - Pf6N2E2_3574 0.18 -2.0
4,164,411 - Pf6N2E2_3574 0.18 -0.5
4,164,411 - Pf6N2E2_3574 0.18 -1.6
4,164,411 - Pf6N2E2_3574 0.18 +0.9
4,164,411 - Pf6N2E2_3574 0.18 -1.0
4,164,411 - Pf6N2E2_3574 0.18 -1.3
4,164,411 - Pf6N2E2_3574 0.18 +0.2
4,164,521 + Pf6N2E2_3574 0.28 -0.6
4,164,521 + Pf6N2E2_3574 0.28 -0.1
4,164,521 + Pf6N2E2_3574 0.28 -0.8
4,164,522 - Pf6N2E2_3574 0.28 +0.1
4,164,569 + Pf6N2E2_3574 0.32 -1.1
4,164,569 + Pf6N2E2_3574 0.32 -0.4
4,164,570 - Pf6N2E2_3574 0.32 +1.0
4,164,570 - Pf6N2E2_3574 0.32 +0.2
4,164,570 - Pf6N2E2_3574 0.32 -1.7
4,164,570 - Pf6N2E2_3574 0.32 +0.3
4,164,570 - Pf6N2E2_3574 0.32 +0.4
4,164,583 + Pf6N2E2_3574 0.34 -0.8
4,164,698 + Pf6N2E2_3574 0.44 -0.4
4,164,699 - Pf6N2E2_3574 0.44 -0.1
4,164,712 - Pf6N2E2_3574 0.45 +0.1
4,164,913 + Pf6N2E2_3574 0.63 -0.4
4,164,947 + Pf6N2E2_3574 0.66 -0.5
4,164,948 - Pf6N2E2_3574 0.66 -0.1
4,165,133 + Pf6N2E2_3574 0.82 +0.2
4,165,133 + Pf6N2E2_3574 0.82 -0.5
4,165,134 - Pf6N2E2_3574 0.82 -0.6
4,165,282 + -1.1
4,165,334 + +0.2
4,165,334 + -0.7
4,165,364 - +0.3
4,165,552 + Pf6N2E2_3575 0.10 -0.4
4,165,552 + Pf6N2E2_3575 0.10 +0.6
4,165,627 - Pf6N2E2_3575 0.20 -0.0
4,165,638 + Pf6N2E2_3575 0.21 -0.7
4,165,702 + Pf6N2E2_3575 0.30 +0.8
4,165,785 + Pf6N2E2_3575 0.41 -0.6
4,165,785 + Pf6N2E2_3575 0.41 -0.1
4,165,786 - Pf6N2E2_3575 0.41 +0.3
4,165,786 - Pf6N2E2_3575 0.41 +0.1
4,165,786 - Pf6N2E2_3575 0.41 +0.5
4,165,786 - Pf6N2E2_3575 0.41 +0.3
4,165,810 - Pf6N2E2_3575 0.44 +0.4
4,165,889 - Pf6N2E2_3575 0.54 +0.0
4,165,893 + Pf6N2E2_3575 0.55 +0.4
4,165,893 + Pf6N2E2_3575 0.55 +0.1
4,165,893 + Pf6N2E2_3575 0.55 -0.2
4,165,893 + Pf6N2E2_3575 0.55 +1.2
4,165,893 + Pf6N2E2_3575 0.55 +0.3
4,165,893 + Pf6N2E2_3575 0.55 +0.5
4,165,893 + Pf6N2E2_3575 0.55 -0.6
4,165,893 + Pf6N2E2_3575 0.55 +0.4
4,165,894 - Pf6N2E2_3575 0.55 +0.7
4,165,894 - Pf6N2E2_3575 0.55 +0.7
4,165,894 - Pf6N2E2_3575 0.55 +0.0
4,165,894 - Pf6N2E2_3575 0.55 +0.7
4,165,894 - Pf6N2E2_3575 0.55 +0.6
4,166,222 - -0.4
4,166,222 - +0.1
4,166,222 - +0.1

Or see this region's nucleotide sequence