Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3386

Experiment: Tetracycline 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3385 and Pf6N2E2_3386 are separated by 127 nucleotidesPf6N2E2_3386 and Pf6N2E2_3387 are separated by 674 nucleotides Pf6N2E2_3385 - Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing, at 3,915,154 to 3,917,964 _3385 Pf6N2E2_3386 - hypothetical protein, at 3,918,092 to 3,918,370 _3386 Pf6N2E2_3387 - Phage integrase, at 3,919,045 to 3,920,301 _3387 Position (kb) 3918 3919Strain fitness (log2 ratio) -2 -1 0 1at 3917.121 kb on - strand, within Pf6N2E2_3385at 3917.266 kb on + strand, within Pf6N2E2_3385at 3917.266 kb on + strand, within Pf6N2E2_3385at 3917.266 kb on + strand, within Pf6N2E2_3385at 3917.267 kb on - strand, within Pf6N2E2_3385at 3917.313 kb on + strand, within Pf6N2E2_3385at 3917.314 kb on - strand, within Pf6N2E2_3385at 3917.515 kb on + strand, within Pf6N2E2_3385at 3917.515 kb on + strand, within Pf6N2E2_3385at 3917.516 kb on - strand, within Pf6N2E2_3385at 3917.581 kb on + strand, within Pf6N2E2_3385at 3917.581 kb on + strand, within Pf6N2E2_3385at 3917.581 kb on + strand, within Pf6N2E2_3385at 3917.581 kb on + strand, within Pf6N2E2_3385at 3917.728 kb on - strandat 3917.837 kb on + strandat 3917.837 kb on + strandat 3917.890 kb on - strandat 3917.926 kb on + strandat 3917.926 kb on + strandat 3917.927 kb on - strandat 3917.927 kb on - strandat 3917.927 kb on - strandat 3917.927 kb on - strandat 3917.972 kb on + strandat 3917.972 kb on + strandat 3917.972 kb on + strandat 3917.973 kb on - strandat 3917.973 kb on - strandat 3918.105 kb on + strandat 3918.105 kb on + strandat 3918.105 kb on + strandat 3918.106 kb on - strandat 3918.106 kb on - strandat 3918.106 kb on - strandat 3918.106 kb on - strandat 3918.111 kb on + strandat 3918.111 kb on + strandat 3918.112 kb on - strandat 3918.112 kb on - strandat 3918.172 kb on + strand, within Pf6N2E2_3386at 3918.173 kb on - strand, within Pf6N2E2_3386at 3918.173 kb on - strand, within Pf6N2E2_3386at 3918.173 kb on - strand, within Pf6N2E2_3386at 3918.210 kb on - strand, within Pf6N2E2_3386at 3918.210 kb on - strand, within Pf6N2E2_3386at 3918.210 kb on - strand, within Pf6N2E2_3386at 3918.232 kb on + strand, within Pf6N2E2_3386at 3918.233 kb on - strand, within Pf6N2E2_3386at 3918.358 kb on + strandat 3918.358 kb on + strandat 3918.358 kb on + strandat 3918.359 kb on - strandat 3918.871 kb on - strandat 3918.997 kb on + strandat 3919.050 kb on + strandat 3919.050 kb on + strandat 3919.051 kb on - strandat 3919.105 kb on - strandat 3919.105 kb on - strandat 3919.105 kb on - strandat 3919.105 kb on - strandat 3919.119 kb on + strandat 3919.328 kb on + strand, within Pf6N2E2_3387at 3919.328 kb on + strand, within Pf6N2E2_3387at 3919.328 kb on + strand, within Pf6N2E2_3387at 3919.329 kb on - strand, within Pf6N2E2_3387at 3919.329 kb on - strand, within Pf6N2E2_3387at 3919.329 kb on - strand, within Pf6N2E2_3387

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0002 mg/ml
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3,917,121 - Pf6N2E2_3385 0.70 +0.7
3,917,266 + Pf6N2E2_3385 0.75 +0.1
3,917,266 + Pf6N2E2_3385 0.75 -0.1
3,917,266 + Pf6N2E2_3385 0.75 -1.1
3,917,267 - Pf6N2E2_3385 0.75 +0.1
3,917,313 + Pf6N2E2_3385 0.77 -0.2
3,917,314 - Pf6N2E2_3385 0.77 -0.1
3,917,515 + Pf6N2E2_3385 0.84 -0.1
3,917,515 + Pf6N2E2_3385 0.84 -0.6
3,917,516 - Pf6N2E2_3385 0.84 -0.7
3,917,581 + Pf6N2E2_3385 0.86 -0.4
3,917,581 + Pf6N2E2_3385 0.86 +1.2
3,917,581 + Pf6N2E2_3385 0.86 +0.4
3,917,581 + Pf6N2E2_3385 0.86 -0.4
3,917,728 - -2.2
3,917,837 + -0.6
3,917,837 + -0.1
3,917,890 - -0.9
3,917,926 + -1.7
3,917,926 + -0.1
3,917,927 - -0.1
3,917,927 - +0.9
3,917,927 - -0.2
3,917,927 - -0.5
3,917,972 + +1.5
3,917,972 + +0.4
3,917,972 + -0.8
3,917,973 - +0.7
3,917,973 - -0.1
3,918,105 + -0.6
3,918,105 + -0.3
3,918,105 + +0.0
3,918,106 - +1.3
3,918,106 - +0.6
3,918,106 - -0.2
3,918,106 - -2.3
3,918,111 + +0.8
3,918,111 + +1.7
3,918,112 - -0.2
3,918,112 - +0.3
3,918,172 + Pf6N2E2_3386 0.29 +0.0
3,918,173 - Pf6N2E2_3386 0.29 -0.6
3,918,173 - Pf6N2E2_3386 0.29 -1.8
3,918,173 - Pf6N2E2_3386 0.29 -0.4
3,918,210 - Pf6N2E2_3386 0.42 -2.2
3,918,210 - Pf6N2E2_3386 0.42 -0.1
3,918,210 - Pf6N2E2_3386 0.42 +0.1
3,918,232 + Pf6N2E2_3386 0.50 -0.1
3,918,233 - Pf6N2E2_3386 0.51 -0.2
3,918,358 + +0.3
3,918,358 + +0.6
3,918,358 + +0.4
3,918,359 - -1.5
3,918,871 - -0.2
3,918,997 + -0.7
3,919,050 + +0.1
3,919,050 + +0.2
3,919,051 - +1.2
3,919,105 - +0.7
3,919,105 - -0.9
3,919,105 - -0.1
3,919,105 - -0.0
3,919,119 + -0.3
3,919,328 + Pf6N2E2_3387 0.23 +1.0
3,919,328 + Pf6N2E2_3387 0.23 +0.6
3,919,328 + Pf6N2E2_3387 0.23 -0.0
3,919,329 - Pf6N2E2_3387 0.23 -0.2
3,919,329 - Pf6N2E2_3387 0.23 +1.2
3,919,329 - Pf6N2E2_3387 0.23 +0.2

Or see this region's nucleotide sequence