Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1994

Experiment: Tetracycline 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1993 and Pf6N2E2_1994 are separated by 4 nucleotidesPf6N2E2_1994 and Pf6N2E2_1995 overlap by 1 nucleotides Pf6N2E2_1993 - putative exported protein, at 2,356,889 to 2,358,316 _1993 Pf6N2E2_1994 - putative lipoprotein, at 2,358,321 to 2,358,719 _1994 Pf6N2E2_1995 - Type IV secretory pathway, VirB4 components, at 2,358,719 to 2,361,568 _1995 Position (kb) 2358 2359Strain fitness (log2 ratio) -2 -1 0 1 2at 2357.421 kb on + strand, within Pf6N2E2_1993at 2357.508 kb on + strand, within Pf6N2E2_1993at 2357.570 kb on + strand, within Pf6N2E2_1993at 2357.570 kb on + strand, within Pf6N2E2_1993at 2357.570 kb on + strand, within Pf6N2E2_1993at 2357.573 kb on - strand, within Pf6N2E2_1993at 2357.677 kb on - strand, within Pf6N2E2_1993at 2357.749 kb on + strand, within Pf6N2E2_1993at 2357.812 kb on - strand, within Pf6N2E2_1993at 2357.975 kb on + strand, within Pf6N2E2_1993at 2358.054 kb on - strand, within Pf6N2E2_1993at 2358.167 kb on + strand, within Pf6N2E2_1993at 2358.192 kb on - strandat 2358.239 kb on - strandat 2358.534 kb on - strand, within Pf6N2E2_1994at 2358.600 kb on + strand, within Pf6N2E2_1994at 2358.600 kb on + strand, within Pf6N2E2_1994at 2358.601 kb on - strand, within Pf6N2E2_1994at 2358.648 kb on + strand, within Pf6N2E2_1994at 2358.684 kb on + strandat 2358.714 kb on + strandat 2358.746 kb on + strandat 2358.746 kb on + strandat 2358.746 kb on + strandat 2358.746 kb on + strandat 2358.747 kb on - strandat 2358.747 kb on - strandat 2358.931 kb on - strandat 2359.111 kb on - strand, within Pf6N2E2_1995at 2359.111 kb on - strand, within Pf6N2E2_1995at 2359.111 kb on - strand, within Pf6N2E2_1995at 2359.111 kb on - strand, within Pf6N2E2_1995at 2359.113 kb on - strand, within Pf6N2E2_1995at 2359.113 kb on - strand, within Pf6N2E2_1995at 2359.113 kb on - strand, within Pf6N2E2_1995at 2359.113 kb on - strand, within Pf6N2E2_1995at 2359.151 kb on - strand, within Pf6N2E2_1995at 2359.164 kb on - strand, within Pf6N2E2_1995at 2359.206 kb on - strand, within Pf6N2E2_1995at 2359.210 kb on - strand, within Pf6N2E2_1995at 2359.536 kb on - strand, within Pf6N2E2_1995

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0002 mg/ml
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2,357,421 + Pf6N2E2_1993 0.37 +0.1
2,357,508 + Pf6N2E2_1993 0.43 -0.4
2,357,570 + Pf6N2E2_1993 0.48 +0.6
2,357,570 + Pf6N2E2_1993 0.48 +0.6
2,357,570 + Pf6N2E2_1993 0.48 -0.1
2,357,573 - Pf6N2E2_1993 0.48 +0.8
2,357,677 - Pf6N2E2_1993 0.55 +0.0
2,357,749 + Pf6N2E2_1993 0.60 +0.4
2,357,812 - Pf6N2E2_1993 0.65 -0.4
2,357,975 + Pf6N2E2_1993 0.76 +0.4
2,358,054 - Pf6N2E2_1993 0.82 -0.2
2,358,167 + Pf6N2E2_1993 0.89 +0.0
2,358,192 - +2.1
2,358,239 - -0.4
2,358,534 - Pf6N2E2_1994 0.53 -0.6
2,358,600 + Pf6N2E2_1994 0.70 -0.3
2,358,600 + Pf6N2E2_1994 0.70 -0.6
2,358,601 - Pf6N2E2_1994 0.70 -1.0
2,358,648 + Pf6N2E2_1994 0.82 -2.2
2,358,684 + -0.8
2,358,714 + -0.2
2,358,746 + -0.1
2,358,746 + +0.2
2,358,746 + +0.3
2,358,746 + +0.2
2,358,747 - -1.4
2,358,747 - -0.8
2,358,931 - +0.8
2,359,111 - Pf6N2E2_1995 0.14 +0.8
2,359,111 - Pf6N2E2_1995 0.14 +0.7
2,359,111 - Pf6N2E2_1995 0.14 +0.6
2,359,111 - Pf6N2E2_1995 0.14 +0.1
2,359,113 - Pf6N2E2_1995 0.14 -0.5
2,359,113 - Pf6N2E2_1995 0.14 -0.0
2,359,113 - Pf6N2E2_1995 0.14 +0.9
2,359,113 - Pf6N2E2_1995 0.14 +0.3
2,359,151 - Pf6N2E2_1995 0.15 +0.5
2,359,164 - Pf6N2E2_1995 0.16 +0.6
2,359,206 - Pf6N2E2_1995 0.17 -0.9
2,359,210 - Pf6N2E2_1995 0.17 -0.8
2,359,536 - Pf6N2E2_1995 0.29 -0.8

Or see this region's nucleotide sequence