Experiment: Tetracycline 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1993 and Pf6N2E2_1994 are separated by 4 nucleotides Pf6N2E2_1994 and Pf6N2E2_1995 overlap by 1 nucleotides
Pf6N2E2_1993 - putative exported protein, at 2,356,889 to 2,358,316
_1993
Pf6N2E2_1994 - putative lipoprotein, at 2,358,321 to 2,358,719
_1994
Pf6N2E2_1995 - Type IV secretory pathway, VirB4 components, at 2,358,719 to 2,361,568
_1995
Position (kb)
2358
2359 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2357.421 kb on + strand, within Pf6N2E2_1993 at 2357.508 kb on + strand, within Pf6N2E2_1993 at 2357.570 kb on + strand, within Pf6N2E2_1993 at 2357.570 kb on + strand, within Pf6N2E2_1993 at 2357.570 kb on + strand, within Pf6N2E2_1993 at 2357.573 kb on - strand, within Pf6N2E2_1993 at 2357.677 kb on - strand, within Pf6N2E2_1993 at 2357.749 kb on + strand, within Pf6N2E2_1993 at 2357.812 kb on - strand, within Pf6N2E2_1993 at 2357.975 kb on + strand, within Pf6N2E2_1993 at 2358.054 kb on - strand, within Pf6N2E2_1993 at 2358.167 kb on + strand, within Pf6N2E2_1993 at 2358.192 kb on - strand at 2358.239 kb on - strand at 2358.534 kb on - strand, within Pf6N2E2_1994 at 2358.600 kb on + strand, within Pf6N2E2_1994 at 2358.600 kb on + strand, within Pf6N2E2_1994 at 2358.601 kb on - strand, within Pf6N2E2_1994 at 2358.648 kb on + strand, within Pf6N2E2_1994 at 2358.684 kb on + strand at 2358.714 kb on + strand at 2358.746 kb on + strand at 2358.746 kb on + strand at 2358.746 kb on + strand at 2358.746 kb on + strand at 2358.747 kb on - strand at 2358.747 kb on - strand at 2358.931 kb on - strand at 2359.111 kb on - strand, within Pf6N2E2_1995 at 2359.111 kb on - strand, within Pf6N2E2_1995 at 2359.111 kb on - strand, within Pf6N2E2_1995 at 2359.111 kb on - strand, within Pf6N2E2_1995 at 2359.113 kb on - strand, within Pf6N2E2_1995 at 2359.113 kb on - strand, within Pf6N2E2_1995 at 2359.113 kb on - strand, within Pf6N2E2_1995 at 2359.113 kb on - strand, within Pf6N2E2_1995 at 2359.151 kb on - strand, within Pf6N2E2_1995 at 2359.164 kb on - strand, within Pf6N2E2_1995 at 2359.206 kb on - strand, within Pf6N2E2_1995 at 2359.210 kb on - strand, within Pf6N2E2_1995 at 2359.536 kb on - strand, within Pf6N2E2_1995
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0002 mg/ml remove 2,357,421 + Pf6N2E2_1993 0.37 +0.1 2,357,508 + Pf6N2E2_1993 0.43 -0.4 2,357,570 + Pf6N2E2_1993 0.48 +0.6 2,357,570 + Pf6N2E2_1993 0.48 +0.6 2,357,570 + Pf6N2E2_1993 0.48 -0.1 2,357,573 - Pf6N2E2_1993 0.48 +0.8 2,357,677 - Pf6N2E2_1993 0.55 +0.0 2,357,749 + Pf6N2E2_1993 0.60 +0.4 2,357,812 - Pf6N2E2_1993 0.65 -0.4 2,357,975 + Pf6N2E2_1993 0.76 +0.4 2,358,054 - Pf6N2E2_1993 0.82 -0.2 2,358,167 + Pf6N2E2_1993 0.89 +0.0 2,358,192 - +2.1 2,358,239 - -0.4 2,358,534 - Pf6N2E2_1994 0.53 -0.6 2,358,600 + Pf6N2E2_1994 0.70 -0.3 2,358,600 + Pf6N2E2_1994 0.70 -0.6 2,358,601 - Pf6N2E2_1994 0.70 -1.0 2,358,648 + Pf6N2E2_1994 0.82 -2.2 2,358,684 + -0.8 2,358,714 + -0.2 2,358,746 + -0.1 2,358,746 + +0.2 2,358,746 + +0.3 2,358,746 + +0.2 2,358,747 - -1.4 2,358,747 - -0.8 2,358,931 - +0.8 2,359,111 - Pf6N2E2_1995 0.14 +0.8 2,359,111 - Pf6N2E2_1995 0.14 +0.7 2,359,111 - Pf6N2E2_1995 0.14 +0.6 2,359,111 - Pf6N2E2_1995 0.14 +0.1 2,359,113 - Pf6N2E2_1995 0.14 -0.5 2,359,113 - Pf6N2E2_1995 0.14 -0.0 2,359,113 - Pf6N2E2_1995 0.14 +0.9 2,359,113 - Pf6N2E2_1995 0.14 +0.3 2,359,151 - Pf6N2E2_1995 0.15 +0.5 2,359,164 - Pf6N2E2_1995 0.16 +0.6 2,359,206 - Pf6N2E2_1995 0.17 -0.9 2,359,210 - Pf6N2E2_1995 0.17 -0.8 2,359,536 - Pf6N2E2_1995 0.29 -0.8
Or see this region's nucleotide sequence