Experiment: H2 N-free with 2g/L casaminos 10mM Ammonium chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08840 and MMP_RS08845 are separated by 55 nucleotides MMP_RS08845 and MMP_RS08850 are separated by 170 nucleotides MMP_RS08850 and MMP_RS08855 are separated by 194 nucleotides
MMP_RS08840: MMP_RS08840 - class I SAM-dependent methyltransferase, at 1,653,262 to 1,654,293
_RS08840
MMP_RS08845: MMP_RS08845 - archaellum operon transcriptional activator EarA family protein, at 1,654,349 to 1,654,666
_RS08845
MMP_RS08850: MMP_RS08850 - hypothetical protein, at 1,654,837 to 1,657,491
_RS08850
MMP_RS08855: MMP_RS08855 - hypothetical protein, at 1,657,686 to 1,659,479
_RS08855
Position (kb)
1654
1655
1656
1657
1658 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1654.093 kb on - strand, within MMP_RS08840 at 1654.147 kb on + strand, within MMP_RS08840 at 1654.165 kb on - strand, within MMP_RS08840 at 1654.196 kb on + strand at 1654.222 kb on + strand at 1654.265 kb on - strand at 1654.294 kb on + strand at 1654.336 kb on + strand at 1654.567 kb on + strand, within MMP_RS08845 at 1654.583 kb on - strand, within MMP_RS08845 at 1654.583 kb on - strand, within MMP_RS08845 at 1654.583 kb on - strand, within MMP_RS08845 at 1654.583 kb on - strand, within MMP_RS08845 at 1654.583 kb on - strand, within MMP_RS08845 at 1654.584 kb on + strand, within MMP_RS08845 at 1654.590 kb on - strand, within MMP_RS08845 at 1654.590 kb on - strand, within MMP_RS08845 at 1654.591 kb on + strand, within MMP_RS08845 at 1654.591 kb on + strand, within MMP_RS08845 at 1654.591 kb on + strand, within MMP_RS08845 at 1654.593 kb on + strand, within MMP_RS08845 at 1654.639 kb on - strand at 1654.658 kb on + strand at 1654.662 kb on + strand at 1654.662 kb on + strand at 1654.717 kb on - strand at 1654.737 kb on + strand at 1654.757 kb on + strand at 1654.757 kb on + strand at 1654.994 kb on + strand at 1655.084 kb on - strand at 1655.084 kb on - strand at 1655.132 kb on + strand, within MMP_RS08850 at 1655.173 kb on + strand, within MMP_RS08850 at 1655.230 kb on + strand, within MMP_RS08850 at 1655.230 kb on + strand, within MMP_RS08850 at 1655.268 kb on + strand, within MMP_RS08850 at 1655.287 kb on - strand, within MMP_RS08850 at 1655.287 kb on - strand, within MMP_RS08850 at 1655.321 kb on + strand, within MMP_RS08850 at 1655.321 kb on + strand, within MMP_RS08850 at 1655.350 kb on - strand, within MMP_RS08850 at 1655.351 kb on + strand, within MMP_RS08850 at 1655.353 kb on + strand, within MMP_RS08850 at 1655.356 kb on - strand, within MMP_RS08850 at 1655.416 kb on - strand, within MMP_RS08850 at 1655.416 kb on - strand, within MMP_RS08850 at 1655.427 kb on + strand, within MMP_RS08850 at 1655.452 kb on - strand, within MMP_RS08850 at 1655.452 kb on - strand, within MMP_RS08850 at 1655.498 kb on + strand, within MMP_RS08850 at 1655.587 kb on - strand, within MMP_RS08850 at 1655.588 kb on + strand, within MMP_RS08850 at 1655.615 kb on + strand, within MMP_RS08850 at 1655.692 kb on - strand, within MMP_RS08850 at 1655.695 kb on + strand, within MMP_RS08850 at 1655.695 kb on + strand, within MMP_RS08850 at 1655.825 kb on + strand, within MMP_RS08850 at 1655.833 kb on - strand, within MMP_RS08850 at 1655.840 kb on + strand, within MMP_RS08850 at 1655.844 kb on - strand, within MMP_RS08850 at 1655.845 kb on + strand, within MMP_RS08850 at 1655.872 kb on + strand, within MMP_RS08850 at 1655.930 kb on + strand, within MMP_RS08850 at 1655.947 kb on - strand, within MMP_RS08850 at 1656.249 kb on - strand, within MMP_RS08850 at 1656.273 kb on + strand, within MMP_RS08850 at 1656.278 kb on - strand, within MMP_RS08850 at 1656.286 kb on + strand, within MMP_RS08850 at 1656.348 kb on + strand, within MMP_RS08850 at 1656.355 kb on + strand, within MMP_RS08850 at 1656.418 kb on - strand, within MMP_RS08850 at 1656.447 kb on + strand, within MMP_RS08850 at 1656.451 kb on + strand, within MMP_RS08850 at 1656.624 kb on - strand, within MMP_RS08850 at 1656.687 kb on + strand, within MMP_RS08850 at 1656.687 kb on + strand, within MMP_RS08850 at 1656.690 kb on - strand, within MMP_RS08850 at 1656.693 kb on + strand, within MMP_RS08850 at 1656.700 kb on + strand, within MMP_RS08850 at 1656.744 kb on - strand, within MMP_RS08850 at 1656.744 kb on - strand, within MMP_RS08850 at 1656.744 kb on - strand, within MMP_RS08850 at 1656.744 kb on - strand, within MMP_RS08850 at 1656.745 kb on + strand, within MMP_RS08850 at 1656.745 kb on + strand, within MMP_RS08850 at 1656.745 kb on + strand, within MMP_RS08850 at 1656.888 kb on + strand, within MMP_RS08850 at 1656.891 kb on + strand, within MMP_RS08850 at 1656.895 kb on + strand, within MMP_RS08850 at 1656.947 kb on + strand, within MMP_RS08850 at 1656.947 kb on + strand, within MMP_RS08850 at 1657.007 kb on + strand, within MMP_RS08850 at 1657.061 kb on - strand, within MMP_RS08850 at 1657.062 kb on + strand, within MMP_RS08850 at 1657.066 kb on + strand, within MMP_RS08850 at 1657.094 kb on + strand, within MMP_RS08850 at 1657.321 kb on - strand at 1657.347 kb on - strand at 1657.359 kb on - strand at 1657.360 kb on + strand at 1657.360 kb on + strand at 1657.361 kb on - strand at 1657.362 kb on + strand at 1657.362 kb on + strand at 1657.491 kb on - strand at 1657.609 kb on - strand at 1657.630 kb on - strand at 1657.652 kb on + strand at 1657.655 kb on - strand at 1657.655 kb on - strand at 1657.713 kb on + strand at 1657.713 kb on + strand at 1657.724 kb on - strand at 1657.724 kb on - strand at 1657.725 kb on + strand at 1657.725 kb on + strand at 1657.725 kb on + strand at 1657.741 kb on - strand at 1657.742 kb on + strand at 1657.755 kb on - strand at 1657.781 kb on - strand at 1657.785 kb on - strand at 1657.786 kb on + strand at 1657.804 kb on - strand at 1657.804 kb on - strand at 1657.804 kb on - strand at 1657.805 kb on + strand at 1657.805 kb on + strand at 1657.805 kb on + strand at 1657.812 kb on + strand at 1657.847 kb on - strand at 1657.847 kb on - strand at 1657.848 kb on + strand at 1657.848 kb on + strand at 1657.855 kb on - strand at 1657.856 kb on + strand at 1657.856 kb on + strand at 1657.856 kb on + strand at 1657.858 kb on - strand at 1657.859 kb on + strand at 1657.859 kb on + strand at 1657.859 kb on + strand at 1657.859 kb on + strand at 1657.859 kb on + strand at 1657.860 kb on - strand at 1657.861 kb on + strand at 1657.861 kb on + strand at 1657.861 kb on + strand at 1657.947 kb on + strand, within MMP_RS08855 at 1658.243 kb on - strand, within MMP_RS08855 at 1658.244 kb on + strand, within MMP_RS08855 at 1658.399 kb on + strand, within MMP_RS08855 at 1658.445 kb on - strand, within MMP_RS08855 at 1658.446 kb on + strand, within MMP_RS08855 at 1658.446 kb on + strand, within MMP_RS08855 at 1658.446 kb on + strand, within MMP_RS08855 at 1658.446 kb on + strand, within MMP_RS08855 at 1658.474 kb on - strand, within MMP_RS08855
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 2g/L casaminos 10mM Ammonium chloride remove 1,654,093 - MMP_RS08840 0.81 -0.8 1,654,147 + MMP_RS08840 0.86 -1.6 1,654,165 - MMP_RS08840 0.88 -0.6 1,654,196 + -2.3 1,654,222 + -1.4 1,654,265 - -0.9 1,654,294 + -1.2 1,654,336 + -0.7 1,654,567 + MMP_RS08845 0.69 +0.9 1,654,583 - MMP_RS08845 0.74 +2.5 1,654,583 - MMP_RS08845 0.74 +0.2 1,654,583 - MMP_RS08845 0.74 +2.7 1,654,583 - MMP_RS08845 0.74 +2.2 1,654,583 - MMP_RS08845 0.74 +1.2 1,654,584 + MMP_RS08845 0.74 +1.7 1,654,590 - MMP_RS08845 0.76 +0.9 1,654,590 - MMP_RS08845 0.76 +0.8 1,654,591 + MMP_RS08845 0.76 -0.4 1,654,591 + MMP_RS08845 0.76 +0.3 1,654,591 + MMP_RS08845 0.76 -0.3 1,654,593 + MMP_RS08845 0.77 +1.4 1,654,639 - +1.8 1,654,658 + +2.8 1,654,662 + +2.8 1,654,662 + +2.5 1,654,717 - +1.2 1,654,737 + +0.8 1,654,757 + +1.6 1,654,757 + +1.5 1,654,994 + +2.0 1,655,084 - +1.2 1,655,084 - +2.1 1,655,132 + MMP_RS08850 0.11 +1.4 1,655,173 + MMP_RS08850 0.13 +1.9 1,655,230 + MMP_RS08850 0.15 -0.5 1,655,230 + MMP_RS08850 0.15 +0.2 1,655,268 + MMP_RS08850 0.16 +1.5 1,655,287 - MMP_RS08850 0.17 +1.8 1,655,287 - MMP_RS08850 0.17 +2.1 1,655,321 + MMP_RS08850 0.18 +2.6 1,655,321 + MMP_RS08850 0.18 +1.0 1,655,350 - MMP_RS08850 0.19 +2.8 1,655,351 + MMP_RS08850 0.19 +1.7 1,655,353 + MMP_RS08850 0.19 +1.5 1,655,356 - MMP_RS08850 0.20 +1.5 1,655,416 - MMP_RS08850 0.22 +0.5 1,655,416 - MMP_RS08850 0.22 +2.8 1,655,427 + MMP_RS08850 0.22 +0.9 1,655,452 - MMP_RS08850 0.23 +1.6 1,655,452 - MMP_RS08850 0.23 +0.1 1,655,498 + MMP_RS08850 0.25 +2.2 1,655,587 - MMP_RS08850 0.28 +0.1 1,655,588 + MMP_RS08850 0.28 +0.1 1,655,615 + MMP_RS08850 0.29 +1.7 1,655,692 - MMP_RS08850 0.32 +2.8 1,655,695 + MMP_RS08850 0.32 +2.2 1,655,695 + MMP_RS08850 0.32 +1.1 1,655,825 + MMP_RS08850 0.37 +2.2 1,655,833 - MMP_RS08850 0.38 +3.4 1,655,840 + MMP_RS08850 0.38 +2.7 1,655,844 - MMP_RS08850 0.38 +2.0 1,655,845 + MMP_RS08850 0.38 +0.5 1,655,872 + MMP_RS08850 0.39 +2.0 1,655,930 + MMP_RS08850 0.41 +1.7 1,655,947 - MMP_RS08850 0.42 +1.3 1,656,249 - MMP_RS08850 0.53 +2.0 1,656,273 + MMP_RS08850 0.54 -0.1 1,656,278 - MMP_RS08850 0.54 +3.5 1,656,286 + MMP_RS08850 0.55 +2.3 1,656,348 + MMP_RS08850 0.57 +1.2 1,656,355 + MMP_RS08850 0.57 +1.8 1,656,418 - MMP_RS08850 0.60 +2.4 1,656,447 + MMP_RS08850 0.61 +2.7 1,656,451 + MMP_RS08850 0.61 -0.6 1,656,624 - MMP_RS08850 0.67 +2.4 1,656,687 + MMP_RS08850 0.70 +1.8 1,656,687 + MMP_RS08850 0.70 +2.0 1,656,690 - MMP_RS08850 0.70 +0.5 1,656,693 + MMP_RS08850 0.70 +2.1 1,656,700 + MMP_RS08850 0.70 +2.1 1,656,744 - MMP_RS08850 0.72 +3.2 1,656,744 - MMP_RS08850 0.72 +1.7 1,656,744 - MMP_RS08850 0.72 +1.1 1,656,744 - MMP_RS08850 0.72 +1.7 1,656,745 + MMP_RS08850 0.72 +0.8 1,656,745 + MMP_RS08850 0.72 +1.1 1,656,745 + MMP_RS08850 0.72 +2.4 1,656,888 + MMP_RS08850 0.77 +1.0 1,656,891 + MMP_RS08850 0.77 +0.1 1,656,895 + MMP_RS08850 0.78 -0.2 1,656,947 + MMP_RS08850 0.79 +1.5 1,656,947 + MMP_RS08850 0.79 +1.5 1,657,007 + MMP_RS08850 0.82 +1.7 1,657,061 - MMP_RS08850 0.84 +1.7 1,657,062 + MMP_RS08850 0.84 +0.7 1,657,066 + MMP_RS08850 0.84 +0.2 1,657,094 + MMP_RS08850 0.85 +0.9 1,657,321 - +1.2 1,657,347 - +2.1 1,657,359 - +1.4 1,657,360 + +2.0 1,657,360 + +2.0 1,657,361 - +1.2 1,657,362 + +1.1 1,657,362 + +0.9 1,657,491 - +1.8 1,657,609 - +0.9 1,657,630 - +0.3 1,657,652 + -0.5 1,657,655 - +0.3 1,657,655 - -0.7 1,657,713 + -0.3 1,657,713 + +0.1 1,657,724 - -0.3 1,657,724 - -0.6 1,657,725 + -0.8 1,657,725 + -0.1 1,657,725 + +0.1 1,657,741 - -0.3 1,657,742 + +0.3 1,657,755 - -0.1 1,657,781 - -0.3 1,657,785 - -1.0 1,657,786 + -0.0 1,657,804 - -0.2 1,657,804 - +0.0 1,657,804 - -0.8 1,657,805 + -0.4 1,657,805 + +0.4 1,657,805 + -1.1 1,657,812 + -0.4 1,657,847 - -0.4 1,657,847 - -0.1 1,657,848 + +0.4 1,657,848 + -0.7 1,657,855 - +0.4 1,657,856 + -0.0 1,657,856 + -0.7 1,657,856 + +0.8 1,657,858 - +0.2 1,657,859 + -0.1 1,657,859 + +0.0 1,657,859 + -0.1 1,657,859 + -0.9 1,657,859 + +0.2 1,657,860 - -0.5 1,657,861 + +0.0 1,657,861 + -1.4 1,657,861 + +0.4 1,657,947 + MMP_RS08855 0.15 +0.3 1,658,243 - MMP_RS08855 0.31 +0.3 1,658,244 + MMP_RS08855 0.31 +0.4 1,658,399 + MMP_RS08855 0.40 +0.2 1,658,445 - MMP_RS08855 0.42 -0.8 1,658,446 + MMP_RS08855 0.42 -0.5 1,658,446 + MMP_RS08855 0.42 -0.5 1,658,446 + MMP_RS08855 0.42 +0.0 1,658,446 + MMP_RS08855 0.42 +0.5 1,658,474 - MMP_RS08855 0.44 +0.1
Or see this region's nucleotide sequence