Experiment: perchlorate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26800 and BWI76_RS26805 overlap by 4 nucleotides BWI76_RS26805 and BWI76_RS26810 overlap by 4 nucleotides BWI76_RS26810 and BWI76_RS26815 are separated by 83 nucleotides BWI76_RS26815 and BWI76_RS26820 are separated by 351 nucleotides BWI76_RS26820 and BWI76_RS26825 overlap by 20 nucleotides BWI76_RS26825 and BWI76_RS26830 are separated by 48 nucleotides
BWI76_RS26800: BWI76_RS26800 - cellulose biosynthesis protein BcsE, at 5,557,019 to 5,558,575
_RS26800
BWI76_RS26805: BWI76_RS26805 - cellulose biosynthesis protein BcsF, at 5,558,572 to 5,558,769
_RS26805
BWI76_RS26810: BWI76_RS26810 - cellulose biosynthesis protein BcsG, at 5,558,766 to 5,560,442
_RS26810
BWI76_RS26815: BWI76_RS26815 - small toxic polypeptide ldrD (Modular protein), at 5,560,526 to 5,560,651
_RS26815
BWI76_RS26820: BWI76_RS26820 - small toxic polypeptide ldrD (Modular protein), at 5,561,003 to 5,561,128
_RS26820
BWI76_RS26825: BWI76_RS26825 - hypothetical protein, at 5,561,109 to 5,561,327
_RS26825
BWI76_RS26830: BWI76_RS26830 - endoglucanase, at 5,561,376 to 5,562,380
_RS26830
Position (kb) 5558
5559
5560
5561 Strain fitness (log2 ratio) -1
0
1
2 at 5557.993 kb on - strand, within BWI76_RS26800 at 5558.006 kb on - strand, within BWI76_RS26800 at 5558.006 kb on - strand, within BWI76_RS26800 at 5558.006 kb on - strand, within BWI76_RS26800 at 5558.222 kb on - strand, within BWI76_RS26800 at 5558.226 kb on + strand at 5558.236 kb on + strand, within BWI76_RS26800 at 5558.244 kb on - strand, within BWI76_RS26800 at 5558.244 kb on - strand, within BWI76_RS26800 at 5558.244 kb on - strand, within BWI76_RS26800 at 5558.244 kb on - strand, within BWI76_RS26800 at 5558.244 kb on - strand, within BWI76_RS26800 at 5558.293 kb on + strand, within BWI76_RS26800 at 5558.318 kb on + strand, within BWI76_RS26800 at 5558.326 kb on - strand, within BWI76_RS26800 at 5558.326 kb on - strand, within BWI76_RS26800 at 5558.556 kb on - strand at 5558.610 kb on - strand, within BWI76_RS26805 at 5558.625 kb on - strand, within BWI76_RS26805 at 5558.675 kb on + strand, within BWI76_RS26805 at 5558.727 kb on + strand, within BWI76_RS26805 at 5558.869 kb on + strand at 5558.942 kb on + strand, within BWI76_RS26810 at 5558.942 kb on + strand, within BWI76_RS26810 at 5558.986 kb on + strand, within BWI76_RS26810 at 5558.986 kb on + strand, within BWI76_RS26810 at 5558.986 kb on + strand, within BWI76_RS26810 at 5558.994 kb on - strand, within BWI76_RS26810 at 5559.397 kb on + strand, within BWI76_RS26810 at 5559.405 kb on - strand, within BWI76_RS26810 at 5559.454 kb on + strand, within BWI76_RS26810 at 5559.497 kb on + strand, within BWI76_RS26810 at 5559.722 kb on + strand, within BWI76_RS26810 at 5559.781 kb on + strand, within BWI76_RS26810 at 5559.789 kb on - strand, within BWI76_RS26810 at 5559.789 kb on - strand, within BWI76_RS26810 at 5559.878 kb on - strand, within BWI76_RS26810 at 5559.964 kb on + strand at 5559.977 kb on - strand, within BWI76_RS26810 at 5559.982 kb on - strand, within BWI76_RS26810 at 5560.369 kb on - strand at 5560.399 kb on + strand at 5560.492 kb on - strand at 5560.729 kb on - strand at 5560.964 kb on - strand at 5561.144 kb on + strand, within BWI76_RS26825 at 5561.342 kb on + strand at 5561.398 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 100 mM remove 5,557,993 - BWI76_RS26800 0.63 +0.4 5,558,006 - BWI76_RS26800 0.63 +1.6 5,558,006 - BWI76_RS26800 0.63 +0.4 5,558,006 - BWI76_RS26800 0.63 +0.6 5,558,222 - BWI76_RS26800 0.77 +0.4 5,558,226 + +0.4 5,558,236 + BWI76_RS26800 0.78 +0.2 5,558,244 - BWI76_RS26800 0.79 +1.3 5,558,244 - BWI76_RS26800 0.79 +0.8 5,558,244 - BWI76_RS26800 0.79 +1.6 5,558,244 - BWI76_RS26800 0.79 +0.4 5,558,244 - BWI76_RS26800 0.79 +0.4 5,558,293 + BWI76_RS26800 0.82 +0.3 5,558,318 + BWI76_RS26800 0.83 -0.3 5,558,326 - BWI76_RS26800 0.84 +0.3 5,558,326 - BWI76_RS26800 0.84 +0.8 5,558,556 - +0.6 5,558,610 - BWI76_RS26805 0.19 +0.5 5,558,625 - BWI76_RS26805 0.27 +1.0 5,558,675 + BWI76_RS26805 0.52 -0.1 5,558,727 + BWI76_RS26805 0.78 -0.6 5,558,869 + +0.8 5,558,942 + BWI76_RS26810 0.10 +2.0 5,558,942 + BWI76_RS26810 0.10 +0.9 5,558,986 + BWI76_RS26810 0.13 +0.0 5,558,986 + BWI76_RS26810 0.13 +0.7 5,558,986 + BWI76_RS26810 0.13 +1.1 5,558,994 - BWI76_RS26810 0.14 +0.0 5,559,397 + BWI76_RS26810 0.38 +0.3 5,559,405 - BWI76_RS26810 0.38 -1.2 5,559,454 + BWI76_RS26810 0.41 +1.2 5,559,497 + BWI76_RS26810 0.44 +0.3 5,559,722 + BWI76_RS26810 0.57 +0.2 5,559,781 + BWI76_RS26810 0.61 +0.0 5,559,789 - BWI76_RS26810 0.61 +0.9 5,559,789 - BWI76_RS26810 0.61 -0.0 5,559,878 - BWI76_RS26810 0.66 -0.2 5,559,964 + +1.0 5,559,977 - BWI76_RS26810 0.72 +1.0 5,559,982 - BWI76_RS26810 0.73 +0.5 5,560,369 - -0.1 5,560,399 + +0.5 5,560,492 - -0.6 5,560,729 - -0.5 5,560,964 - -0.3 5,561,144 + BWI76_RS26825 0.16 +1.1 5,561,342 + -0.1 5,561,398 + +0.3
Or see this region's nucleotide sequence