Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19140

Experiment: perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19135 and BWI76_RS19140 are separated by 127 nucleotidesBWI76_RS19140 and BWI76_RS19145 are separated by 280 nucleotidesBWI76_RS19145 and BWI76_RS19150 overlap by 4 nucleotides BWI76_RS19135: BWI76_RS19135 - molecular chaperone, at 3,977,957 to 3,979,309 _RS19135 BWI76_RS19140: BWI76_RS19140 - citrate (Si)-synthase, at 3,979,437 to 3,980,723 _RS19140 BWI76_RS19145: BWI76_RS19145 - formate dehydrogenase cytochrome b556 subunit, at 3,981,004 to 3,981,633 _RS19145 BWI76_RS19150: BWI76_RS19150 - formate dehydrogenase subunit beta, at 3,981,630 to 3,982,532 _RS19150 Position (kb) 3979 3980 3981Strain fitness (log2 ratio) -1 0 1at 3978.508 kb on + strand, within BWI76_RS19135at 3978.717 kb on + strand, within BWI76_RS19135at 3978.946 kb on - strand, within BWI76_RS19135at 3978.993 kb on - strand, within BWI76_RS19135at 3979.128 kb on - strand, within BWI76_RS19135at 3979.230 kb on - strandat 3979.335 kb on + strandat 3979.363 kb on + strandat 3979.390 kb on + strandat 3979.391 kb on - strandat 3979.609 kb on + strand, within BWI76_RS19140at 3979.718 kb on - strand, within BWI76_RS19140at 3979.790 kb on + strand, within BWI76_RS19140at 3979.890 kb on - strand, within BWI76_RS19140at 3980.306 kb on + strand, within BWI76_RS19140at 3980.319 kb on + strand, within BWI76_RS19140at 3980.319 kb on + strand, within BWI76_RS19140at 3980.327 kb on - strand, within BWI76_RS19140at 3980.484 kb on - strand, within BWI76_RS19140at 3980.662 kb on + strandat 3981.070 kb on - strand, within BWI76_RS19145

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 100 mM
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3,978,508 + BWI76_RS19135 0.41 -0.4
3,978,717 + BWI76_RS19135 0.56 +0.1
3,978,946 - BWI76_RS19135 0.73 -0.9
3,978,993 - BWI76_RS19135 0.77 +0.0
3,979,128 - BWI76_RS19135 0.87 -0.5
3,979,230 - -0.8
3,979,335 + +0.8
3,979,363 + +0.2
3,979,390 + +0.1
3,979,391 - +0.2
3,979,609 + BWI76_RS19140 0.13 -0.5
3,979,718 - BWI76_RS19140 0.22 -0.5
3,979,790 + BWI76_RS19140 0.27 +0.0
3,979,890 - BWI76_RS19140 0.35 -0.7
3,980,306 + BWI76_RS19140 0.68 +0.1
3,980,319 + BWI76_RS19140 0.69 +1.0
3,980,319 + BWI76_RS19140 0.69 +0.6
3,980,327 - BWI76_RS19140 0.69 -0.1
3,980,484 - BWI76_RS19140 0.81 -0.3
3,980,662 + -0.2
3,981,070 - BWI76_RS19145 0.10 +0.0

Or see this region's nucleotide sequence