Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16225

Experiment: perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16215 and BWI76_RS16220 overlap by 23 nucleotidesBWI76_RS16220 and BWI76_RS16225 overlap by 1 nucleotidesBWI76_RS16225 and BWI76_RS16230 are separated by 36 nucleotidesBWI76_RS16230 and BWI76_RS16235 overlap by 4 nucleotides BWI76_RS16215: BWI76_RS16215 - hypothetical protein, at 3,364,338 to 3,365,288 _RS16215 BWI76_RS16220: BWI76_RS16220 - hypothetical protein, at 3,365,266 to 3,365,468 _RS16220 BWI76_RS16225: BWI76_RS16225 - arginine:ornithine antiporter, at 3,365,468 to 3,366,850 _RS16225 BWI76_RS16230: BWI76_RS16230 - dihydromonapterin reductase, at 3,366,887 to 3,367,612 _RS16230 BWI76_RS16235: BWI76_RS16235 - membrane protein, at 3,367,609 to 3,367,944 _RS16235 Position (kb) 3365 3366 3367Strain fitness (log2 ratio) -1 0 1 2at 3364.581 kb on - strand, within BWI76_RS16215at 3364.813 kb on + strand, within BWI76_RS16215at 3364.835 kb on + strand, within BWI76_RS16215at 3365.240 kb on + strandat 3365.251 kb on - strandat 3365.402 kb on - strand, within BWI76_RS16220at 3365.522 kb on - strandat 3365.686 kb on - strandat 3365.958 kb on - strand, within BWI76_RS16225at 3366.062 kb on - strand, within BWI76_RS16225at 3366.087 kb on - strand, within BWI76_RS16225at 3366.160 kb on - strand, within BWI76_RS16225at 3366.356 kb on + strand, within BWI76_RS16225at 3366.356 kb on + strand, within BWI76_RS16225at 3366.552 kb on + strand, within BWI76_RS16225at 3367.111 kb on + strand, within BWI76_RS16230at 3367.342 kb on - strand, within BWI76_RS16230at 3367.527 kb on + strandat 3367.557 kb on - strandat 3367.647 kb on + strand, within BWI76_RS16235at 3367.654 kb on + strand, within BWI76_RS16235at 3367.816 kb on - strand, within BWI76_RS16235

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 100 mM
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3,364,581 - BWI76_RS16215 0.26 +0.2
3,364,813 + BWI76_RS16215 0.50 +0.7
3,364,835 + BWI76_RS16215 0.52 -0.0
3,365,240 + +0.1
3,365,251 - -0.7
3,365,402 - BWI76_RS16220 0.67 +0.4
3,365,522 - +0.7
3,365,686 - +0.6
3,365,958 - BWI76_RS16225 0.35 -0.1
3,366,062 - BWI76_RS16225 0.43 -0.1
3,366,087 - BWI76_RS16225 0.45 +0.7
3,366,160 - BWI76_RS16225 0.50 +0.6
3,366,356 + BWI76_RS16225 0.64 +1.0
3,366,356 + BWI76_RS16225 0.64 -0.3
3,366,552 + BWI76_RS16225 0.78 +1.8
3,367,111 + BWI76_RS16230 0.31 -0.4
3,367,342 - BWI76_RS16230 0.63 -0.0
3,367,527 + +1.0
3,367,557 - -0.8
3,367,647 + BWI76_RS16235 0.11 +0.1
3,367,654 + BWI76_RS16235 0.13 -1.1
3,367,816 - BWI76_RS16235 0.62 -0.1

Or see this region's nucleotide sequence