Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07920

Experiment: perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07910 and BWI76_RS07915 overlap by 4 nucleotidesBWI76_RS07915 and BWI76_RS07920 are separated by 173 nucleotidesBWI76_RS07920 and BWI76_RS07925 are separated by 0 nucleotidesBWI76_RS07925 and BWI76_RS07930 overlap by 16 nucleotides BWI76_RS07910: BWI76_RS07910 - acireductone dioxygenase, at 1,680,937 to 1,681,479 _RS07910 BWI76_RS07915: BWI76_RS07915 - acireductone synthase, at 1,681,476 to 1,682,165 _RS07915 BWI76_RS07920: BWI76_RS07920 - methionine aminotransferase, at 1,682,339 to 1,683,499 _RS07920 BWI76_RS07925: BWI76_RS07925 - hypothetical protein, at 1,683,500 to 1,684,129 _RS07925 BWI76_RS07930: BWI76_RS07930 - phosphoadenosine phosphosulfate reductase, at 1,684,114 to 1,685,337 _RS07930 Position (kb) 1682 1683 1684Strain fitness (log2 ratio) -2 -1 0 1 2at 1681.480 kb on + strandat 1681.705 kb on - strand, within BWI76_RS07915at 1681.779 kb on + strand, within BWI76_RS07915at 1681.899 kb on + strand, within BWI76_RS07915at 1681.906 kb on - strand, within BWI76_RS07915at 1682.022 kb on - strand, within BWI76_RS07915at 1682.089 kb on + strand, within BWI76_RS07915at 1682.311 kb on - strandat 1682.737 kb on + strand, within BWI76_RS07920at 1682.836 kb on + strand, within BWI76_RS07920at 1682.842 kb on + strand, within BWI76_RS07920at 1682.978 kb on + strand, within BWI76_RS07920at 1683.133 kb on + strand, within BWI76_RS07920at 1683.313 kb on + strandat 1683.400 kb on + strandat 1683.568 kb on - strand, within BWI76_RS07925at 1683.627 kb on - strand, within BWI76_RS07925at 1683.801 kb on + strand, within BWI76_RS07925at 1683.814 kb on - strand, within BWI76_RS07925at 1683.955 kb on - strand, within BWI76_RS07925at 1683.978 kb on + strand, within BWI76_RS07925at 1684.033 kb on + strand, within BWI76_RS07925at 1684.065 kb on - strand, within BWI76_RS07925at 1684.070 kb on + strandat 1684.105 kb on - strandat 1684.105 kb on - strandat 1684.131 kb on + strandat 1684.131 kb on + strandat 1684.139 kb on - strandat 1684.139 kb on - strandat 1684.200 kb on + strandat 1684.200 kb on + strandat 1684.200 kb on + strandat 1684.200 kb on + strandat 1684.200 kb on + strandat 1684.208 kb on - strandat 1684.208 kb on - strandat 1684.208 kb on - strandat 1684.210 kb on + strandat 1684.237 kb on + strand, within BWI76_RS07930at 1684.400 kb on + strand, within BWI76_RS07930at 1684.405 kb on + strand, within BWI76_RS07930at 1684.405 kb on + strand, within BWI76_RS07930at 1684.408 kb on - strand, within BWI76_RS07930at 1684.439 kb on + strand, within BWI76_RS07930at 1684.442 kb on - strand, within BWI76_RS07930at 1684.447 kb on - strand, within BWI76_RS07930at 1684.460 kb on + strand, within BWI76_RS07930at 1684.492 kb on - strand, within BWI76_RS07930at 1684.492 kb on - strand, within BWI76_RS07930

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 100 mM
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1,681,480 + +0.0
1,681,705 - BWI76_RS07915 0.33 -0.6
1,681,779 + BWI76_RS07915 0.44 -0.4
1,681,899 + BWI76_RS07915 0.61 +0.5
1,681,906 - BWI76_RS07915 0.62 -0.5
1,682,022 - BWI76_RS07915 0.79 +0.3
1,682,089 + BWI76_RS07915 0.89 -0.7
1,682,311 - +0.7
1,682,737 + BWI76_RS07920 0.34 +2.2
1,682,836 + BWI76_RS07920 0.43 +1.1
1,682,842 + BWI76_RS07920 0.43 -1.2
1,682,978 + BWI76_RS07920 0.55 +1.6
1,683,133 + BWI76_RS07920 0.68 -0.1
1,683,313 + +2.0
1,683,400 + -0.0
1,683,568 - BWI76_RS07925 0.11 +1.0
1,683,627 - BWI76_RS07925 0.20 +0.6
1,683,801 + BWI76_RS07925 0.48 -0.7
1,683,814 - BWI76_RS07925 0.50 +0.6
1,683,955 - BWI76_RS07925 0.72 -0.5
1,683,978 + BWI76_RS07925 0.76 +0.7
1,684,033 + BWI76_RS07925 0.85 +0.2
1,684,065 - BWI76_RS07925 0.90 -0.7
1,684,070 + +0.1
1,684,105 - -1.9
1,684,105 - +0.2
1,684,131 + +0.2
1,684,131 + +0.3
1,684,139 - +0.1
1,684,139 - -0.7
1,684,200 + +0.0
1,684,200 + +0.7
1,684,200 + -0.7
1,684,200 + +0.2
1,684,200 + +0.2
1,684,208 - +0.1
1,684,208 - +0.4
1,684,208 - -0.3
1,684,210 + +0.2
1,684,237 + BWI76_RS07930 0.10 +0.1
1,684,400 + BWI76_RS07930 0.23 +0.2
1,684,405 + BWI76_RS07930 0.24 +0.5
1,684,405 + BWI76_RS07930 0.24 -0.3
1,684,408 - BWI76_RS07930 0.24 -0.4
1,684,439 + BWI76_RS07930 0.27 +0.6
1,684,442 - BWI76_RS07930 0.27 +0.2
1,684,447 - BWI76_RS07930 0.27 -0.6
1,684,460 + BWI76_RS07930 0.28 -0.4
1,684,492 - BWI76_RS07930 0.31 +0.3
1,684,492 - BWI76_RS07930 0.31 +0.1

Or see this region's nucleotide sequence