Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2291

Experiment: MoYLS4 with Chromate 50uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntb2488 and DVU2290 overlap by 4 nucleotidesDVU2290 and DVU2291 overlap by 4 nucleotidesDVU2291 and hypA are separated by 8 nucleotideshypA and cooF overlap by 4 nucleotides DVU2289: b2488 - hydrogenase, CooX subunit, putative (TIGR), at 2,382,468 to 2,383,103 b2488 DVU2290: DVU2290 - hydrogenase, CooU subunit, putative (TIGR), at 2,383,100 to 2,383,645 DVU2290 DVU2291: DVU2291 - carbon monoxide-induced hydrogenase CooH, putative (TIGR), at 2,383,642 to 2,384,742 DVU2291 DVU2292: hypA - hydrogenase nickel insertion protein HypA (TIGR), at 2,384,751 to 2,385,113 hypA DVU2293: cooF - iron-sulfur protein CooF (TIGR), at 2,385,110 to 2,385,631 cooF Position (kb) 2383 2384 2385Strain fitness (log2 ratio) -2 -1 0 1at 2382.750 kb on - strand, within b2488at 2382.926 kb on + strand, within b2488at 2383.041 kb on + strandat 2383.041 kb on + strandat 2383.041 kb on + strandat 2383.116 kb on + strandat 2383.243 kb on + strand, within DVU2290at 2383.365 kb on + strand, within DVU2290at 2383.639 kb on + strandat 2383.775 kb on + strand, within DVU2291at 2383.819 kb on - strand, within DVU2291at 2384.062 kb on + strand, within DVU2291at 2384.276 kb on - strand, within DVU2291at 2384.352 kb on + strand, within DVU2291at 2384.556 kb on + strand, within DVU2291at 2384.716 kb on - strandat 2384.850 kb on + strand, within hypAat 2384.863 kb on - strand, within hypAat 2384.876 kb on + strand, within hypAat 2384.949 kb on + strand, within hypAat 2385.084 kb on - strandat 2385.304 kb on + strand, within cooFat 2385.519 kb on + strand, within cooFat 2385.568 kb on + strand, within cooFat 2385.592 kb on - strandat 2385.639 kb on - strandat 2385.702 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chromate 50uM
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2,382,750 - b2488 DVU2289 0.44 +0.4
2,382,926 + b2488 DVU2289 0.72 -1.6
2,383,041 + -1.7
2,383,041 + -0.6
2,383,041 + -0.6
2,383,116 + +0.5
2,383,243 + DVU2290 0.26 +0.7
2,383,365 + DVU2290 0.49 -1.9
2,383,639 + +0.2
2,383,775 + DVU2291 0.12 -1.0
2,383,819 - DVU2291 0.16 -0.8
2,384,062 + DVU2291 0.38 +0.2
2,384,276 - DVU2291 0.58 -0.6
2,384,352 + DVU2291 0.64 -0.7
2,384,556 + DVU2291 0.83 -2.3
2,384,716 - -0.7
2,384,850 + hypA DVU2292 0.27 -1.3
2,384,863 - hypA DVU2292 0.31 -0.9
2,384,876 + hypA DVU2292 0.34 -1.5
2,384,949 + hypA DVU2292 0.55 -1.2
2,385,084 - -0.4
2,385,304 + cooF DVU2293 0.37 -0.2
2,385,519 + cooF DVU2293 0.78 -0.8
2,385,568 + cooF DVU2293 0.88 -1.5
2,385,592 - +0.4
2,385,639 - +1.0
2,385,702 + -0.2

Or see this region's nucleotide sequence