Experiment: Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_21445 and IAI47_21450 are separated by 74 nucleotides IAI47_21450 and IAI47_21455 are separated by 575 nucleotides
IAI47_21445: IAI47_21445 - LysR family transcriptional regulator, at 29,094 to 29,990
_21445
IAI47_21450: IAI47_21450 - general stress protein, at 30,065 to 30,241
_21450
IAI47_21455: IAI47_21455 - FIST C-terminal domain-containing protein, at 30,817 to 32,790
_21455
Position (kb) 30
31 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 29.126 kb on + strand at 29.126 kb on + strand at 29.127 kb on - strand at 29.127 kb on - strand at 29.127 kb on - strand at 29.127 kb on - strand at 29.127 kb on - strand at 29.127 kb on - strand at 29.127 kb on - strand at 29.127 kb on - strand at 29.130 kb on - strand at 29.130 kb on - strand at 29.153 kb on + strand at 29.154 kb on - strand at 29.181 kb on - strand at 29.181 kb on - strand at 29.207 kb on + strand, within IAI47_21445 at 29.291 kb on - strand, within IAI47_21445 at 29.291 kb on - strand, within IAI47_21445 at 29.291 kb on - strand, within IAI47_21445 at 29.339 kb on + strand, within IAI47_21445 at 29.339 kb on + strand, within IAI47_21445 at 29.340 kb on - strand, within IAI47_21445 at 29.340 kb on - strand, within IAI47_21445 at 29.377 kb on + strand, within IAI47_21445 at 29.400 kb on - strand, within IAI47_21445 at 29.400 kb on - strand, within IAI47_21445 at 29.400 kb on - strand, within IAI47_21445 at 29.546 kb on + strand, within IAI47_21445 at 29.547 kb on - strand, within IAI47_21445 at 29.552 kb on + strand, within IAI47_21445 at 29.552 kb on + strand, within IAI47_21445 at 29.552 kb on + strand, within IAI47_21445 at 29.552 kb on + strand, within IAI47_21445 at 29.552 kb on + strand, within IAI47_21445 at 29.552 kb on + strand, within IAI47_21445 at 29.552 kb on + strand, within IAI47_21445 at 29.552 kb on + strand, within IAI47_21445 at 29.552 kb on + strand, within IAI47_21445 at 29.553 kb on - strand, within IAI47_21445 at 29.553 kb on - strand, within IAI47_21445 at 29.553 kb on - strand, within IAI47_21445 at 29.553 kb on - strand, within IAI47_21445 at 29.553 kb on - strand, within IAI47_21445 at 29.553 kb on - strand, within IAI47_21445 at 29.581 kb on + strand, within IAI47_21445 at 29.581 kb on + strand, within IAI47_21445 at 29.610 kb on + strand, within IAI47_21445 at 29.669 kb on + strand, within IAI47_21445 at 29.669 kb on + strand, within IAI47_21445 at 29.669 kb on + strand, within IAI47_21445 at 29.669 kb on + strand, within IAI47_21445 at 29.669 kb on + strand, within IAI47_21445 at 29.669 kb on + strand, within IAI47_21445 at 29.669 kb on + strand, within IAI47_21445 at 29.669 kb on + strand, within IAI47_21445 at 29.669 kb on + strand, within IAI47_21445 at 29.669 kb on + strand, within IAI47_21445 at 29.669 kb on + strand, within IAI47_21445 at 29.670 kb on - strand, within IAI47_21445 at 29.670 kb on - strand, within IAI47_21445 at 29.670 kb on - strand, within IAI47_21445 at 29.670 kb on - strand, within IAI47_21445 at 29.670 kb on - strand, within IAI47_21445 at 29.670 kb on - strand, within IAI47_21445 at 29.670 kb on - strand, within IAI47_21445 at 29.672 kb on + strand, within IAI47_21445 at 29.673 kb on - strand, within IAI47_21445 at 29.673 kb on - strand, within IAI47_21445 at 29.673 kb on - strand, within IAI47_21445 at 29.700 kb on + strand, within IAI47_21445 at 29.700 kb on + strand, within IAI47_21445 at 29.700 kb on + strand, within IAI47_21445 at 29.700 kb on + strand, within IAI47_21445 at 29.700 kb on + strand, within IAI47_21445 at 29.700 kb on + strand, within IAI47_21445 at 29.700 kb on + strand, within IAI47_21445 at 29.701 kb on - strand, within IAI47_21445 at 29.701 kb on - strand, within IAI47_21445 at 29.701 kb on - strand, within IAI47_21445 at 29.701 kb on - strand, within IAI47_21445 at 29.701 kb on - strand, within IAI47_21445 at 29.701 kb on - strand, within IAI47_21445 at 29.701 kb on - strand, within IAI47_21445 at 29.701 kb on - strand, within IAI47_21445 at 29.701 kb on - strand, within IAI47_21445 at 29.701 kb on - strand, within IAI47_21445 at 29.701 kb on - strand, within IAI47_21445 at 29.701 kb on - strand, within IAI47_21445 at 29.701 kb on - strand, within IAI47_21445 at 29.701 kb on - strand, within IAI47_21445 at 29.758 kb on + strand, within IAI47_21445 at 29.758 kb on + strand, within IAI47_21445 at 29.759 kb on - strand, within IAI47_21445 at 29.759 kb on - strand, within IAI47_21445 at 29.759 kb on - strand, within IAI47_21445 at 29.904 kb on + strand at 29.907 kb on + strand at 29.907 kb on + strand at 29.907 kb on + strand at 29.907 kb on + strand at 29.907 kb on + strand at 29.907 kb on + strand at 29.907 kb on + strand at 29.907 kb on + strand at 29.907 kb on + strand at 29.907 kb on + strand at 29.907 kb on + strand at 29.908 kb on - strand at 29.908 kb on - strand at 29.908 kb on - strand at 29.908 kb on - strand at 29.908 kb on - strand at 29.908 kb on - strand at 29.911 kb on + strand at 29.913 kb on + strand at 29.913 kb on + strand at 29.913 kb on + strand at 29.913 kb on + strand at 29.913 kb on + strand at 29.913 kb on + strand at 29.914 kb on - strand at 29.914 kb on - strand at 29.917 kb on - strand at 29.917 kb on - strand at 29.948 kb on + strand at 29.949 kb on - strand at 29.975 kb on - strand at 30.036 kb on + strand at 30.037 kb on - strand at 30.039 kb on + strand at 30.039 kb on + strand at 30.039 kb on + strand at 30.039 kb on + strand at 30.040 kb on - strand at 30.040 kb on - strand at 30.040 kb on - strand at 30.040 kb on - strand at 30.040 kb on - strand at 30.040 kb on - strand at 30.056 kb on + strand at 30.066 kb on + strand at 30.067 kb on - strand at 30.067 kb on - strand at 30.070 kb on + strand at 30.070 kb on + strand at 30.070 kb on + strand at 30.071 kb on - strand at 30.071 kb on - strand at 30.071 kb on - strand at 30.071 kb on - strand at 30.085 kb on + strand, within IAI47_21450 at 30.086 kb on - strand, within IAI47_21450 at 30.225 kb on + strand at 30.225 kb on + strand at 30.226 kb on - strand at 30.226 kb on - strand at 30.226 kb on - strand at 30.226 kb on - strand at 30.226 kb on - strand at 30.226 kb on - strand at 30.241 kb on + strand at 30.241 kb on + strand at 30.242 kb on - strand at 30.242 kb on - strand at 30.242 kb on - strand at 30.242 kb on - strand at 30.242 kb on - strand at 30.254 kb on + strand at 30.254 kb on + strand at 30.254 kb on + strand at 30.254 kb on + strand at 30.254 kb on + strand at 30.255 kb on - strand at 30.255 kb on - strand at 30.255 kb on - strand at 30.268 kb on + strand at 30.268 kb on + strand at 30.269 kb on - strand at 30.269 kb on - strand at 30.269 kb on - strand at 30.269 kb on - strand at 30.272 kb on + strand at 30.273 kb on - strand at 30.282 kb on + strand at 30.283 kb on - strand at 30.283 kb on - strand at 30.286 kb on + strand at 30.286 kb on + strand at 30.286 kb on + strand at 30.287 kb on - strand at 30.287 kb on - strand at 30.287 kb on - strand at 30.304 kb on + strand at 30.304 kb on + strand at 30.304 kb on + strand at 30.305 kb on - strand at 30.305 kb on - strand at 30.305 kb on - strand at 30.305 kb on - strand at 30.321 kb on + strand at 30.350 kb on + strand at 30.395 kb on - strand at 30.416 kb on - strand at 30.442 kb on + strand at 30.449 kb on - strand at 30.500 kb on - strand at 30.546 kb on + strand at 30.547 kb on - strand at 30.556 kb on + strand at 30.557 kb on - strand at 30.557 kb on - strand at 30.585 kb on + strand at 30.585 kb on + strand at 30.585 kb on + strand at 30.590 kb on + strand at 30.594 kb on - strand at 30.594 kb on - strand at 30.617 kb on - strand at 30.743 kb on - strand at 30.743 kb on - strand at 30.755 kb on - strand at 30.755 kb on - strand at 30.790 kb on + strand at 30.791 kb on - strand at 30.791 kb on - strand at 30.798 kb on + strand at 30.810 kb on + strand at 30.810 kb on + strand at 30.811 kb on - strand at 30.813 kb on + strand at 30.816 kb on + strand at 30.816 kb on + strand at 30.816 kb on + strand at 30.816 kb on + strand at 30.817 kb on - strand at 30.817 kb on - strand at 30.817 kb on - strand at 30.817 kb on - strand at 30.817 kb on - strand at 30.817 kb on - strand at 30.817 kb on - strand at 30.828 kb on + strand at 30.828 kb on + strand at 30.828 kb on + strand at 30.828 kb on + strand at 30.828 kb on + strand at 30.829 kb on - strand at 30.829 kb on - strand at 30.871 kb on - strand at 30.938 kb on + strand at 30.938 kb on + strand at 30.939 kb on - strand at 30.939 kb on - strand at 31.092 kb on + strand, within IAI47_21455 at 31.092 kb on + strand, within IAI47_21455 at 31.093 kb on - strand, within IAI47_21455 at 31.093 kb on - strand, within IAI47_21455 at 31.096 kb on + strand, within IAI47_21455 at 31.096 kb on + strand, within IAI47_21455 at 31.096 kb on + strand, within IAI47_21455 at 31.096 kb on + strand, within IAI47_21455 at 31.097 kb on - strand, within IAI47_21455 at 31.097 kb on - strand, within IAI47_21455 at 31.097 kb on - strand, within IAI47_21455 at 31.097 kb on - strand, within IAI47_21455 at 31.097 kb on - strand, within IAI47_21455 at 31.097 kb on - strand, within IAI47_21455 at 31.097 kb on - strand, within IAI47_21455 at 31.097 kb on - strand, within IAI47_21455 at 31.126 kb on + strand, within IAI47_21455 at 31.126 kb on + strand, within IAI47_21455 at 31.126 kb on + strand, within IAI47_21455 at 31.126 kb on + strand, within IAI47_21455 at 31.127 kb on - strand, within IAI47_21455 at 31.127 kb on - strand, within IAI47_21455 at 31.215 kb on + strand, within IAI47_21455 at 31.215 kb on + strand, within IAI47_21455 at 31.215 kb on + strand, within IAI47_21455 at 31.215 kb on + strand, within IAI47_21455 at 31.215 kb on + strand, within IAI47_21455 at 31.216 kb on - strand, within IAI47_21455 at 31.216 kb on - strand, within IAI47_21455 at 31.216 kb on - strand, within IAI47_21455 at 31.216 kb on - strand, within IAI47_21455 at 31.216 kb on - strand, within IAI47_21455 at 31.216 kb on - strand, within IAI47_21455 at 31.216 kb on - strand, within IAI47_21455 at 31.216 kb on - strand, within IAI47_21455 at 31.216 kb on - strand, within IAI47_21455 at 31.218 kb on + strand, within IAI47_21455
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 29,126 + +1.7 29,126 + +1.6 29,127 - +1.5 29,127 - -0.3 29,127 - -0.2 29,127 - -0.6 29,127 - +0.5 29,127 - -0.8 29,127 - +2.3 29,127 - +0.7 29,130 - -0.8 29,130 - +0.2 29,153 + +0.2 29,154 - -0.7 29,181 - +0.1 29,181 - +0.3 29,207 + IAI47_21445 0.13 +0.4 29,291 - IAI47_21445 0.22 -1.9 29,291 - IAI47_21445 0.22 -0.3 29,291 - IAI47_21445 0.22 +1.8 29,339 + IAI47_21445 0.27 -0.7 29,339 + IAI47_21445 0.27 -0.7 29,340 - IAI47_21445 0.27 -0.0 29,340 - IAI47_21445 0.27 -0.7 29,377 + IAI47_21445 0.32 +0.2 29,400 - IAI47_21445 0.34 -2.1 29,400 - IAI47_21445 0.34 +0.9 29,400 - IAI47_21445 0.34 +0.9 29,546 + IAI47_21445 0.50 -0.1 29,547 - IAI47_21445 0.51 -0.6 29,552 + IAI47_21445 0.51 -0.8 29,552 + IAI47_21445 0.51 -0.7 29,552 + IAI47_21445 0.51 +0.5 29,552 + IAI47_21445 0.51 +0.4 29,552 + IAI47_21445 0.51 +0.1 29,552 + IAI47_21445 0.51 +1.3 29,552 + IAI47_21445 0.51 +1.1 29,552 + IAI47_21445 0.51 +1.0 29,552 + IAI47_21445 0.51 +2.0 29,553 - IAI47_21445 0.51 -2.7 29,553 - IAI47_21445 0.51 +0.3 29,553 - IAI47_21445 0.51 +0.4 29,553 - IAI47_21445 0.51 -1.0 29,553 - IAI47_21445 0.51 -1.1 29,553 - IAI47_21445 0.51 +0.2 29,581 + IAI47_21445 0.54 +0.4 29,581 + IAI47_21445 0.54 -1.9 29,610 + IAI47_21445 0.58 +0.9 29,669 + IAI47_21445 0.64 +0.4 29,669 + IAI47_21445 0.64 -0.0 29,669 + IAI47_21445 0.64 +0.2 29,669 + IAI47_21445 0.64 +0.3 29,669 + IAI47_21445 0.64 -0.8 29,669 + IAI47_21445 0.64 +0.3 29,669 + IAI47_21445 0.64 +0.1 29,669 + IAI47_21445 0.64 +0.7 29,669 + IAI47_21445 0.64 +0.5 29,669 + IAI47_21445 0.64 -0.5 29,669 + IAI47_21445 0.64 +1.6 29,670 - IAI47_21445 0.64 +0.2 29,670 - IAI47_21445 0.64 +0.1 29,670 - IAI47_21445 0.64 +0.7 29,670 - IAI47_21445 0.64 -0.6 29,670 - IAI47_21445 0.64 +2.1 29,670 - IAI47_21445 0.64 -0.6 29,670 - IAI47_21445 0.64 -0.5 29,672 + IAI47_21445 0.64 +0.9 29,673 - IAI47_21445 0.65 -0.6 29,673 - IAI47_21445 0.65 -0.8 29,673 - IAI47_21445 0.65 +0.2 29,700 + IAI47_21445 0.68 -0.4 29,700 + IAI47_21445 0.68 +0.2 29,700 + IAI47_21445 0.68 +0.1 29,700 + IAI47_21445 0.68 +0.3 29,700 + IAI47_21445 0.68 +0.0 29,700 + IAI47_21445 0.68 -1.2 29,700 + IAI47_21445 0.68 +1.5 29,701 - IAI47_21445 0.68 -0.0 29,701 - IAI47_21445 0.68 +0.1 29,701 - IAI47_21445 0.68 +0.2 29,701 - IAI47_21445 0.68 -3.0 29,701 - IAI47_21445 0.68 -0.2 29,701 - IAI47_21445 0.68 +0.5 29,701 - IAI47_21445 0.68 -0.9 29,701 - IAI47_21445 0.68 +0.9 29,701 - IAI47_21445 0.68 -0.3 29,701 - IAI47_21445 0.68 +0.1 29,701 - IAI47_21445 0.68 -0.8 29,701 - IAI47_21445 0.68 -0.4 29,701 - IAI47_21445 0.68 -0.1 29,701 - IAI47_21445 0.68 -2.4 29,758 + IAI47_21445 0.74 +1.0 29,758 + IAI47_21445 0.74 +0.5 29,759 - IAI47_21445 0.74 -1.9 29,759 - IAI47_21445 0.74 -1.3 29,759 - IAI47_21445 0.74 -0.7 29,904 + -1.7 29,907 + +0.3 29,907 + -1.3 29,907 + +0.7 29,907 + -0.0 29,907 + +0.5 29,907 + -1.0 29,907 + +1.1 29,907 + +0.1 29,907 + +1.6 29,907 + -0.1 29,907 + -2.0 29,908 - -2.4 29,908 - +0.7 29,908 - +0.5 29,908 - -1.6 29,908 - -1.5 29,908 - -0.6 29,911 + -1.2 29,913 + -0.7 29,913 + +0.4 29,913 + +0.2 29,913 + +1.4 29,913 + +0.3 29,913 + -1.2 29,914 - +0.5 29,914 - +0.5 29,917 - +0.1 29,917 - -1.6 29,948 + -1.2 29,949 - -0.3 29,975 - -0.6 30,036 + -2.0 30,037 - -0.8 30,039 + -2.0 30,039 + -0.1 30,039 + +0.4 30,039 + -1.2 30,040 - -0.0 30,040 - +0.5 30,040 - -0.8 30,040 - -0.1 30,040 - -1.1 30,040 - +1.2 30,056 + -0.6 30,066 + +0.1 30,067 - -0.0 30,067 - -1.2 30,070 + -1.2 30,070 + -0.5 30,070 + +0.5 30,071 - -1.6 30,071 - -1.8 30,071 - -0.3 30,071 - +0.7 30,085 + IAI47_21450 0.11 -1.2 30,086 - IAI47_21450 0.12 -1.0 30,225 + +0.3 30,225 + +0.1 30,226 - +1.0 30,226 - +2.9 30,226 - +1.0 30,226 - +0.1 30,226 - +1.3 30,226 - +0.3 30,241 + +0.4 30,241 + -1.5 30,242 - -0.5 30,242 - -0.1 30,242 - -0.1 30,242 - -0.1 30,242 - -1.2 30,254 + +0.7 30,254 + -0.4 30,254 + -0.6 30,254 + +0.9 30,254 + +0.3 30,255 - +0.1 30,255 - +2.2 30,255 - -0.2 30,268 + -0.5 30,268 + +2.6 30,269 - -0.1 30,269 - -0.4 30,269 - -0.7 30,269 - +1.1 30,272 + -1.9 30,273 - +0.4 30,282 + -1.4 30,283 - +0.3 30,283 - -0.5 30,286 + +1.7 30,286 + -0.2 30,286 + -0.8 30,287 - +0.1 30,287 - +0.5 30,287 - +2.7 30,304 + +1.3 30,304 + -0.0 30,304 + -1.1 30,305 - +0.4 30,305 - -0.5 30,305 - +1.1 30,305 - -0.8 30,321 + +1.2 30,350 + -0.7 30,395 - -0.2 30,416 - +1.5 30,442 + -0.5 30,449 - -1.4 30,500 - +0.1 30,546 + -0.5 30,547 - -0.1 30,556 + -2.9 30,557 - +1.0 30,557 - -1.0 30,585 + -0.9 30,585 + -1.8 30,585 + -0.6 30,590 + -0.1 30,594 - +0.5 30,594 - +0.9 30,617 - -1.1 30,743 - -0.7 30,743 - -0.3 30,755 - +1.1 30,755 - +0.5 30,790 + +0.8 30,791 - +1.1 30,791 - -2.0 30,798 + +1.3 30,810 + +0.1 30,810 + -2.1 30,811 - -2.1 30,813 + -1.7 30,816 + +0.5 30,816 + +0.5 30,816 + -0.8 30,816 + +0.1 30,817 - +1.3 30,817 - +0.5 30,817 - -1.0 30,817 - -0.9 30,817 - -1.5 30,817 - +0.0 30,817 - +2.3 30,828 + -0.8 30,828 + +0.9 30,828 + -1.5 30,828 + -0.1 30,828 + -0.6 30,829 - +1.4 30,829 - -0.4 30,871 - +0.7 30,938 + +2.1 30,938 + -0.1 30,939 - +0.4 30,939 - +0.3 31,092 + IAI47_21455 0.14 +1.2 31,092 + IAI47_21455 0.14 +1.2 31,093 - IAI47_21455 0.14 -1.3 31,093 - IAI47_21455 0.14 +0.8 31,096 + IAI47_21455 0.14 +0.9 31,096 + IAI47_21455 0.14 -0.4 31,096 + IAI47_21455 0.14 +0.8 31,096 + IAI47_21455 0.14 -0.1 31,097 - IAI47_21455 0.14 +0.5 31,097 - IAI47_21455 0.14 +1.9 31,097 - IAI47_21455 0.14 -0.9 31,097 - IAI47_21455 0.14 +1.9 31,097 - IAI47_21455 0.14 -0.3 31,097 - IAI47_21455 0.14 +0.2 31,097 - IAI47_21455 0.14 -1.2 31,097 - IAI47_21455 0.14 +2.2 31,126 + IAI47_21455 0.16 +1.9 31,126 + IAI47_21455 0.16 -0.5 31,126 + IAI47_21455 0.16 +4.1 31,126 + IAI47_21455 0.16 +1.1 31,127 - IAI47_21455 0.16 -0.7 31,127 - IAI47_21455 0.16 +0.6 31,215 + IAI47_21455 0.20 +0.8 31,215 + IAI47_21455 0.20 +0.9 31,215 + IAI47_21455 0.20 +0.8 31,215 + IAI47_21455 0.20 +1.1 31,215 + IAI47_21455 0.20 +0.3 31,216 - IAI47_21455 0.20 -0.1 31,216 - IAI47_21455 0.20 +0.1 31,216 - IAI47_21455 0.20 +0.2 31,216 - IAI47_21455 0.20 +0.4 31,216 - IAI47_21455 0.20 -0.7 31,216 - IAI47_21455 0.20 +1.6 31,216 - IAI47_21455 0.20 -1.6 31,216 - IAI47_21455 0.20 -0.5 31,216 - IAI47_21455 0.20 -0.5 31,218 + IAI47_21455 0.20 +0.6
Or see this region's nucleotide sequence