Experiment: Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_18875 and IAI47_18880 are separated by 39 nucleotides IAI47_18880 and IAI47_18885 are separated by 95 nucleotides IAI47_18885 and IAI47_18890 overlap by 49 nucleotides
IAI47_18875: IAI47_18875 - alpha/beta hydrolase, at 8,177 to 9,676
_18875
IAI47_18880: IAI47_18880 - aldo/keto reductase family oxidoreductase, at 9,716 to 10,570
_18880
IAI47_18885: IAI47_18885 - LysR family transcriptional regulator, at 10,666 to 11,625
_18885
IAI47_18890: IAI47_18890 - ATP-dependent helicase, at 11,577 to 16,127
_18890
Position (kb) 10
11
12 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 9.717 kb on + strand at 9.717 kb on + strand at 9.717 kb on + strand at 9.717 kb on + strand at 9.717 kb on + strand at 9.717 kb on + strand at 9.717 kb on + strand at 9.717 kb on + strand at 9.718 kb on - strand at 9.718 kb on - strand at 9.718 kb on - strand at 9.806 kb on - strand, within IAI47_18880 at 9.806 kb on - strand, within IAI47_18880 at 9.823 kb on + strand, within IAI47_18880 at 9.824 kb on - strand, within IAI47_18880 at 9.824 kb on - strand, within IAI47_18880 at 9.898 kb on + strand, within IAI47_18880 at 9.898 kb on + strand, within IAI47_18880 at 9.951 kb on + strand, within IAI47_18880 at 9.951 kb on + strand, within IAI47_18880 at 9.952 kb on - strand, within IAI47_18880 at 9.952 kb on - strand, within IAI47_18880 at 9.952 kb on - strand, within IAI47_18880 at 10.012 kb on + strand, within IAI47_18880 at 10.014 kb on + strand, within IAI47_18880 at 10.014 kb on + strand, within IAI47_18880 at 10.014 kb on + strand, within IAI47_18880 at 10.014 kb on + strand, within IAI47_18880 at 10.014 kb on + strand, within IAI47_18880 at 10.014 kb on + strand, within IAI47_18880 at 10.014 kb on + strand, within IAI47_18880 at 10.015 kb on - strand, within IAI47_18880 at 10.015 kb on - strand, within IAI47_18880 at 10.015 kb on - strand, within IAI47_18880 at 10.015 kb on - strand, within IAI47_18880 at 10.015 kb on - strand, within IAI47_18880 at 10.015 kb on - strand, within IAI47_18880 at 10.015 kb on - strand, within IAI47_18880 at 10.015 kb on - strand, within IAI47_18880 at 10.015 kb on - strand, within IAI47_18880 at 10.015 kb on - strand, within IAI47_18880 at 10.018 kb on + strand, within IAI47_18880 at 10.018 kb on + strand, within IAI47_18880 at 10.018 kb on + strand, within IAI47_18880 at 10.018 kb on + strand, within IAI47_18880 at 10.018 kb on + strand, within IAI47_18880 at 10.019 kb on - strand, within IAI47_18880 at 10.019 kb on - strand, within IAI47_18880 at 10.019 kb on - strand, within IAI47_18880 at 10.019 kb on - strand, within IAI47_18880 at 10.019 kb on - strand, within IAI47_18880 at 10.019 kb on - strand, within IAI47_18880 at 10.019 kb on - strand, within IAI47_18880 at 10.118 kb on + strand, within IAI47_18880 at 10.162 kb on + strand, within IAI47_18880 at 10.162 kb on + strand, within IAI47_18880 at 10.162 kb on + strand, within IAI47_18880 at 10.183 kb on + strand, within IAI47_18880 at 10.184 kb on - strand, within IAI47_18880 at 10.184 kb on - strand, within IAI47_18880 at 10.184 kb on - strand, within IAI47_18880 at 10.234 kb on + strand, within IAI47_18880 at 10.234 kb on + strand, within IAI47_18880 at 10.311 kb on - strand, within IAI47_18880 at 10.347 kb on + strand, within IAI47_18880 at 10.348 kb on - strand, within IAI47_18880 at 10.348 kb on - strand, within IAI47_18880 at 10.364 kb on + strand, within IAI47_18880 at 10.390 kb on - strand, within IAI47_18880 at 10.408 kb on + strand, within IAI47_18880 at 10.409 kb on - strand, within IAI47_18880 at 10.448 kb on + strand, within IAI47_18880 at 10.449 kb on - strand, within IAI47_18880 at 10.449 kb on - strand, within IAI47_18880 at 10.449 kb on - strand, within IAI47_18880 at 10.449 kb on - strand, within IAI47_18880 at 10.449 kb on - strand, within IAI47_18880 at 10.497 kb on - strand at 10.497 kb on - strand at 10.513 kb on - strand at 10.548 kb on + strand at 10.548 kb on + strand at 10.548 kb on + strand at 10.549 kb on - strand at 10.560 kb on + strand at 10.561 kb on + strand at 10.561 kb on + strand at 10.562 kb on - strand at 10.592 kb on - strand at 10.592 kb on - strand at 10.592 kb on - strand at 10.602 kb on + strand at 10.603 kb on - strand at 10.613 kb on + strand at 10.613 kb on + strand at 10.626 kb on - strand at 10.651 kb on - strand at 10.651 kb on - strand at 10.698 kb on - strand at 10.897 kb on - strand, within IAI47_18885 at 10.897 kb on - strand, within IAI47_18885 at 10.897 kb on - strand, within IAI47_18885 at 10.929 kb on + strand, within IAI47_18885 at 10.929 kb on + strand, within IAI47_18885 at 10.929 kb on + strand, within IAI47_18885 at 10.929 kb on + strand, within IAI47_18885 at 10.930 kb on - strand, within IAI47_18885 at 10.930 kb on - strand, within IAI47_18885 at 10.930 kb on - strand, within IAI47_18885 at 10.932 kb on + strand, within IAI47_18885 at 10.932 kb on + strand, within IAI47_18885 at 10.932 kb on + strand, within IAI47_18885 at 10.932 kb on + strand, within IAI47_18885 at 10.986 kb on - strand, within IAI47_18885 at 11.060 kb on + strand, within IAI47_18885 at 11.060 kb on + strand, within IAI47_18885 at 11.060 kb on + strand, within IAI47_18885 at 11.061 kb on - strand, within IAI47_18885 at 11.061 kb on - strand, within IAI47_18885 at 11.061 kb on - strand, within IAI47_18885 at 11.061 kb on - strand, within IAI47_18885 at 11.061 kb on - strand, within IAI47_18885 at 11.101 kb on + strand, within IAI47_18885 at 11.101 kb on + strand, within IAI47_18885 at 11.135 kb on + strand, within IAI47_18885 at 11.135 kb on + strand, within IAI47_18885 at 11.135 kb on + strand, within IAI47_18885 at 11.135 kb on + strand, within IAI47_18885 at 11.135 kb on + strand, within IAI47_18885 at 11.135 kb on + strand, within IAI47_18885 at 11.135 kb on + strand, within IAI47_18885 at 11.135 kb on + strand, within IAI47_18885 at 11.135 kb on + strand, within IAI47_18885 at 11.135 kb on + strand, within IAI47_18885 at 11.136 kb on - strand, within IAI47_18885 at 11.136 kb on - strand, within IAI47_18885 at 11.136 kb on - strand, within IAI47_18885 at 11.136 kb on - strand, within IAI47_18885 at 11.139 kb on + strand, within IAI47_18885 at 11.139 kb on + strand, within IAI47_18885 at 11.139 kb on + strand, within IAI47_18885 at 11.139 kb on + strand, within IAI47_18885 at 11.139 kb on + strand, within IAI47_18885 at 11.139 kb on + strand, within IAI47_18885 at 11.140 kb on - strand, within IAI47_18885 at 11.140 kb on - strand, within IAI47_18885 at 11.140 kb on - strand, within IAI47_18885 at 11.140 kb on - strand, within IAI47_18885 at 11.185 kb on + strand, within IAI47_18885 at 11.185 kb on + strand, within IAI47_18885 at 11.197 kb on + strand, within IAI47_18885 at 11.226 kb on + strand, within IAI47_18885 at 11.226 kb on + strand, within IAI47_18885 at 11.227 kb on - strand, within IAI47_18885 at 11.352 kb on + strand, within IAI47_18885 at 11.353 kb on - strand, within IAI47_18885 at 11.393 kb on + strand, within IAI47_18885 at 11.393 kb on + strand, within IAI47_18885 at 11.394 kb on - strand, within IAI47_18885 at 11.398 kb on + strand, within IAI47_18885 at 11.398 kb on + strand, within IAI47_18885 at 11.398 kb on + strand, within IAI47_18885 at 11.399 kb on - strand, within IAI47_18885 at 11.399 kb on - strand, within IAI47_18885 at 11.494 kb on + strand, within IAI47_18885 at 11.497 kb on + strand, within IAI47_18885 at 11.498 kb on - strand, within IAI47_18885 at 11.530 kb on - strand at 11.550 kb on - strand at 11.582 kb on + strand at 11.582 kb on + strand at 11.582 kb on + strand at 11.583 kb on - strand at 11.583 kb on - strand at 11.583 kb on - strand at 11.583 kb on - strand at 11.583 kb on - strand at 11.583 kb on - strand at 11.585 kb on - strand at 11.670 kb on + strand at 11.671 kb on - strand at 11.699 kb on + strand at 11.773 kb on - strand at 11.773 kb on - strand at 11.773 kb on - strand at 11.781 kb on - strand at 11.797 kb on + strand at 11.797 kb on + strand at 11.797 kb on + strand at 11.798 kb on - strand at 11.798 kb on - strand at 11.798 kb on - strand at 11.802 kb on + strand at 11.802 kb on + strand at 11.803 kb on - strand at 11.803 kb on - strand at 11.803 kb on - strand at 11.858 kb on + strand at 11.859 kb on - strand at 11.928 kb on + strand at 11.928 kb on + strand at 11.928 kb on + strand at 11.929 kb on - strand at 11.955 kb on - strand at 11.955 kb on - strand at 12.066 kb on + strand, within IAI47_18890 at 12.189 kb on - strand, within IAI47_18890 at 12.230 kb on + strand, within IAI47_18890 at 12.231 kb on - strand, within IAI47_18890 at 12.231 kb on - strand, within IAI47_18890 at 12.231 kb on - strand, within IAI47_18890 at 12.231 kb on - strand, within IAI47_18890 at 12.231 kb on - strand, within IAI47_18890 at 12.270 kb on + strand, within IAI47_18890 at 12.271 kb on - strand, within IAI47_18890 at 12.340 kb on - strand, within IAI47_18890 at 12.340 kb on - strand, within IAI47_18890 at 12.349 kb on - strand, within IAI47_18890 at 12.376 kb on + strand, within IAI47_18890 at 12.376 kb on + strand, within IAI47_18890 at 12.376 kb on + strand, within IAI47_18890 at 12.377 kb on - strand, within IAI47_18890 at 12.486 kb on + strand, within IAI47_18890 at 12.498 kb on - strand, within IAI47_18890 at 12.510 kb on + strand, within IAI47_18890 at 12.511 kb on - strand, within IAI47_18890 at 12.518 kb on + strand, within IAI47_18890 at 12.518 kb on + strand, within IAI47_18890 at 12.519 kb on - strand, within IAI47_18890 at 12.611 kb on + strand, within IAI47_18890 at 12.612 kb on - strand, within IAI47_18890 at 12.612 kb on - strand, within IAI47_18890 at 12.612 kb on - strand, within IAI47_18890 at 12.612 kb on - strand, within IAI47_18890
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 9,717 + +1.4 9,717 + -0.3 9,717 + -1.2 9,717 + -0.7 9,717 + -0.2 9,717 + +0.3 9,717 + +0.4 9,717 + -1.0 9,718 - +0.1 9,718 - +0.9 9,718 - +0.5 9,806 - IAI47_18880 0.11 -0.5 9,806 - IAI47_18880 0.11 +0.4 9,823 + IAI47_18880 0.13 +0.4 9,824 - IAI47_18880 0.13 -0.6 9,824 - IAI47_18880 0.13 -0.2 9,898 + IAI47_18880 0.21 -0.4 9,898 + IAI47_18880 0.21 -0.8 9,951 + IAI47_18880 0.27 -0.4 9,951 + IAI47_18880 0.27 -0.6 9,952 - IAI47_18880 0.28 -0.4 9,952 - IAI47_18880 0.28 +0.2 9,952 - IAI47_18880 0.28 +1.1 10,012 + IAI47_18880 0.35 -0.4 10,014 + IAI47_18880 0.35 +1.4 10,014 + IAI47_18880 0.35 +3.0 10,014 + IAI47_18880 0.35 -2.0 10,014 + IAI47_18880 0.35 -0.1 10,014 + IAI47_18880 0.35 +1.4 10,014 + IAI47_18880 0.35 +1.2 10,014 + IAI47_18880 0.35 +0.8 10,015 - IAI47_18880 0.35 -0.2 10,015 - IAI47_18880 0.35 -0.4 10,015 - IAI47_18880 0.35 +2.5 10,015 - IAI47_18880 0.35 +1.3 10,015 - IAI47_18880 0.35 +0.8 10,015 - IAI47_18880 0.35 +0.5 10,015 - IAI47_18880 0.35 -0.5 10,015 - IAI47_18880 0.35 +2.5 10,015 - IAI47_18880 0.35 +0.9 10,015 - IAI47_18880 0.35 -1.0 10,018 + IAI47_18880 0.35 +0.9 10,018 + IAI47_18880 0.35 +1.3 10,018 + IAI47_18880 0.35 +0.4 10,018 + IAI47_18880 0.35 +0.9 10,018 + IAI47_18880 0.35 +0.4 10,019 - IAI47_18880 0.35 +2.2 10,019 - IAI47_18880 0.35 +2.6 10,019 - IAI47_18880 0.35 -0.7 10,019 - IAI47_18880 0.35 +0.6 10,019 - IAI47_18880 0.35 -1.1 10,019 - IAI47_18880 0.35 +2.2 10,019 - IAI47_18880 0.35 +1.1 10,118 + IAI47_18880 0.47 -0.8 10,162 + IAI47_18880 0.52 +0.5 10,162 + IAI47_18880 0.52 +2.4 10,162 + IAI47_18880 0.52 -1.2 10,183 + IAI47_18880 0.55 -0.2 10,184 - IAI47_18880 0.55 +0.8 10,184 - IAI47_18880 0.55 +0.6 10,184 - IAI47_18880 0.55 +0.6 10,234 + IAI47_18880 0.61 +0.8 10,234 + IAI47_18880 0.61 +0.4 10,311 - IAI47_18880 0.70 -0.2 10,347 + IAI47_18880 0.74 -0.3 10,348 - IAI47_18880 0.74 +0.8 10,348 - IAI47_18880 0.74 -1.6 10,364 + IAI47_18880 0.76 +0.7 10,390 - IAI47_18880 0.79 +1.3 10,408 + IAI47_18880 0.81 -0.8 10,409 - IAI47_18880 0.81 +0.6 10,448 + IAI47_18880 0.86 -0.1 10,449 - IAI47_18880 0.86 +0.8 10,449 - IAI47_18880 0.86 -0.1 10,449 - IAI47_18880 0.86 +0.8 10,449 - IAI47_18880 0.86 -0.6 10,449 - IAI47_18880 0.86 +1.1 10,497 - -0.2 10,497 - +1.2 10,513 - +1.8 10,548 + +0.2 10,548 + +0.8 10,548 + +3.8 10,549 - -0.1 10,560 + +0.6 10,561 + +0.8 10,561 + -0.4 10,562 - -0.6 10,592 - +0.9 10,592 - +1.3 10,592 - +0.3 10,602 + -1.5 10,603 - +0.2 10,613 + +1.2 10,613 + +0.5 10,626 - +0.5 10,651 - +0.1 10,651 - +0.3 10,698 - -0.3 10,897 - IAI47_18885 0.24 -1.1 10,897 - IAI47_18885 0.24 +2.2 10,897 - IAI47_18885 0.24 +1.8 10,929 + IAI47_18885 0.27 +0.4 10,929 + IAI47_18885 0.27 -0.5 10,929 + IAI47_18885 0.27 -0.2 10,929 + IAI47_18885 0.27 +0.6 10,930 - IAI47_18885 0.28 +0.2 10,930 - IAI47_18885 0.28 +0.8 10,930 - IAI47_18885 0.28 +1.9 10,932 + IAI47_18885 0.28 +0.2 10,932 + IAI47_18885 0.28 -1.1 10,932 + IAI47_18885 0.28 +1.4 10,932 + IAI47_18885 0.28 -0.5 10,986 - IAI47_18885 0.33 -0.8 11,060 + IAI47_18885 0.41 +0.2 11,060 + IAI47_18885 0.41 +0.8 11,060 + IAI47_18885 0.41 +1.8 11,061 - IAI47_18885 0.41 -0.2 11,061 - IAI47_18885 0.41 -0.2 11,061 - IAI47_18885 0.41 +0.1 11,061 - IAI47_18885 0.41 -0.8 11,061 - IAI47_18885 0.41 +0.6 11,101 + IAI47_18885 0.45 -0.2 11,101 + IAI47_18885 0.45 -0.4 11,135 + IAI47_18885 0.49 +0.4 11,135 + IAI47_18885 0.49 -1.5 11,135 + IAI47_18885 0.49 +0.7 11,135 + IAI47_18885 0.49 +0.8 11,135 + IAI47_18885 0.49 +0.7 11,135 + IAI47_18885 0.49 +0.3 11,135 + IAI47_18885 0.49 +0.6 11,135 + IAI47_18885 0.49 -0.2 11,135 + IAI47_18885 0.49 -1.2 11,135 + IAI47_18885 0.49 -0.4 11,136 - IAI47_18885 0.49 -0.1 11,136 - IAI47_18885 0.49 +0.9 11,136 - IAI47_18885 0.49 -0.3 11,136 - IAI47_18885 0.49 +0.9 11,139 + IAI47_18885 0.49 +0.5 11,139 + IAI47_18885 0.49 +0.6 11,139 + IAI47_18885 0.49 +0.4 11,139 + IAI47_18885 0.49 +0.4 11,139 + IAI47_18885 0.49 +2.3 11,139 + IAI47_18885 0.49 +1.4 11,140 - IAI47_18885 0.49 +1.0 11,140 - IAI47_18885 0.49 -0.4 11,140 - IAI47_18885 0.49 -1.8 11,140 - IAI47_18885 0.49 +1.2 11,185 + IAI47_18885 0.54 +2.2 11,185 + IAI47_18885 0.54 +2.2 11,197 + IAI47_18885 0.55 -0.5 11,226 + IAI47_18885 0.58 -0.2 11,226 + IAI47_18885 0.58 +0.4 11,227 - IAI47_18885 0.58 +0.4 11,352 + IAI47_18885 0.71 +1.2 11,353 - IAI47_18885 0.72 +0.9 11,393 + IAI47_18885 0.76 -1.8 11,393 + IAI47_18885 0.76 +0.2 11,394 - IAI47_18885 0.76 +1.4 11,398 + IAI47_18885 0.76 +0.2 11,398 + IAI47_18885 0.76 +0.8 11,398 + IAI47_18885 0.76 -1.4 11,399 - IAI47_18885 0.76 +2.2 11,399 - IAI47_18885 0.76 +0.3 11,494 + IAI47_18885 0.86 +1.4 11,497 + IAI47_18885 0.87 -0.1 11,498 - IAI47_18885 0.87 +0.8 11,530 - +0.2 11,550 - +0.3 11,582 + -0.2 11,582 + -1.0 11,582 + +0.6 11,583 - -0.3 11,583 - +1.2 11,583 - +1.3 11,583 - +0.3 11,583 - -0.8 11,583 - +1.2 11,585 - -0.4 11,670 + +0.4 11,671 - +0.2 11,699 + -1.1 11,773 - -0.5 11,773 - +1.3 11,773 - +1.8 11,781 - +2.8 11,797 + -0.2 11,797 + +1.5 11,797 + +0.3 11,798 - +1.2 11,798 - +0.8 11,798 - +1.2 11,802 + +0.3 11,802 + +0.3 11,803 - +0.1 11,803 - -0.5 11,803 - +0.3 11,858 + +0.6 11,859 - +1.3 11,928 + +0.1 11,928 + +0.6 11,928 + +0.7 11,929 - +0.6 11,955 - -1.0 11,955 - -0.2 12,066 + IAI47_18890 0.11 +1.1 12,189 - IAI47_18890 0.13 +1.4 12,230 + IAI47_18890 0.14 +1.6 12,231 - IAI47_18890 0.14 +0.9 12,231 - IAI47_18890 0.14 +0.7 12,231 - IAI47_18890 0.14 +2.4 12,231 - IAI47_18890 0.14 +0.8 12,231 - IAI47_18890 0.14 +0.9 12,270 + IAI47_18890 0.15 -0.4 12,271 - IAI47_18890 0.15 +0.2 12,340 - IAI47_18890 0.17 +0.8 12,340 - IAI47_18890 0.17 +0.7 12,349 - IAI47_18890 0.17 +0.1 12,376 + IAI47_18890 0.18 +0.8 12,376 + IAI47_18890 0.18 -0.1 12,376 + IAI47_18890 0.18 -0.3 12,377 - IAI47_18890 0.18 +1.2 12,486 + IAI47_18890 0.20 +0.1 12,498 - IAI47_18890 0.20 +1.5 12,510 + IAI47_18890 0.21 +0.3 12,511 - IAI47_18890 0.21 +1.6 12,518 + IAI47_18890 0.21 -0.1 12,518 + IAI47_18890 0.21 +0.8 12,519 - IAI47_18890 0.21 +1.2 12,611 + IAI47_18890 0.23 -0.1 12,612 - IAI47_18890 0.23 +0.3 12,612 - IAI47_18890 0.23 +1.9 12,612 - IAI47_18890 0.23 +1.8 12,612 - IAI47_18890 0.23 +1.3
Or see this region's nucleotide sequence