Strain Fitness in Pantoea sp. MT58 around IAI47_14755

Experiment: Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_14745 and IAI47_14750 are separated by 56 nucleotidesIAI47_14750 and IAI47_14755 overlap by 11 nucleotidesIAI47_14755 and IAI47_14760 are separated by 55 nucleotidesIAI47_14760 and IAI47_14765 are separated by 19 nucleotides IAI47_14745: IAI47_14745 - aldo/keto reductase, at 3,111,529 to 3,112,503 _14745 IAI47_14750: IAI47_14750 - phosphatidylglycerophosphatase A, at 3,112,560 to 3,113,054 _14750 IAI47_14755: IAI47_14755 - thiamine-phosphate kinase, at 3,113,044 to 3,114,021 _14755 IAI47_14760: IAI47_14760 - transcription antitermination factor NusB, at 3,114,077 to 3,114,496 _14760 IAI47_14765: IAI47_14765 - 6,7-dimethyl-8-ribityllumazine synthase, at 3,114,516 to 3,114,986 _14765 Position (kb) 3113 3114 3115Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3112.084 kb on + strand, within IAI47_14745at 3112.085 kb on - strand, within IAI47_14745at 3112.085 kb on - strand, within IAI47_14745at 3112.085 kb on - strand, within IAI47_14745at 3112.232 kb on + strand, within IAI47_14745at 3112.232 kb on + strand, within IAI47_14745at 3112.233 kb on - strand, within IAI47_14745at 3112.233 kb on - strand, within IAI47_14745at 3112.246 kb on + strand, within IAI47_14745at 3112.246 kb on + strand, within IAI47_14745at 3112.246 kb on + strand, within IAI47_14745at 3112.247 kb on - strand, within IAI47_14745at 3112.247 kb on - strand, within IAI47_14745at 3112.247 kb on - strand, within IAI47_14745at 3112.247 kb on - strand, within IAI47_14745at 3112.247 kb on - strand, within IAI47_14745at 3112.247 kb on - strand, within IAI47_14745at 3112.308 kb on + strand, within IAI47_14745at 3112.309 kb on - strand, within IAI47_14745at 3112.309 kb on - strand, within IAI47_14745at 3112.309 kb on - strand, within IAI47_14745at 3112.378 kb on - strand, within IAI47_14745at 3112.452 kb on + strandat 3112.452 kb on + strandat 3112.453 kb on - strandat 3112.471 kb on + strandat 3112.471 kb on + strandat 3112.472 kb on - strandat 3112.472 kb on - strandat 3112.472 kb on - strandat 3112.472 kb on - strandat 3112.490 kb on + strandat 3112.491 kb on - strandat 3112.491 kb on - strandat 3112.538 kb on + strandat 3112.538 kb on + strandat 3112.539 kb on - strandat 3112.539 kb on - strandat 3112.539 kb on - strandat 3112.549 kb on + strandat 3112.549 kb on + strandat 3112.550 kb on - strandat 3112.550 kb on - strandat 3112.550 kb on - strandat 3112.561 kb on + strandat 3112.588 kb on + strandat 3112.589 kb on - strandat 3112.589 kb on - strandat 3112.589 kb on - strandat 3112.619 kb on + strand, within IAI47_14750at 3112.619 kb on + strand, within IAI47_14750at 3112.620 kb on - strand, within IAI47_14750at 3112.620 kb on - strand, within IAI47_14750at 3112.620 kb on - strand, within IAI47_14750at 3112.620 kb on - strand, within IAI47_14750at 3112.620 kb on - strand, within IAI47_14750at 3112.620 kb on - strand, within IAI47_14750at 3112.634 kb on + strand, within IAI47_14750at 3112.634 kb on + strand, within IAI47_14750at 3112.635 kb on - strand, within IAI47_14750at 3112.635 kb on - strand, within IAI47_14750at 3112.694 kb on + strand, within IAI47_14750at 3112.694 kb on + strand, within IAI47_14750at 3112.695 kb on - strand, within IAI47_14750at 3112.695 kb on - strand, within IAI47_14750at 3112.695 kb on - strand, within IAI47_14750at 3112.703 kb on + strand, within IAI47_14750at 3112.704 kb on - strand, within IAI47_14750at 3112.766 kb on + strand, within IAI47_14750at 3112.766 kb on + strand, within IAI47_14750at 3112.767 kb on - strand, within IAI47_14750at 3112.767 kb on - strand, within IAI47_14750at 3112.781 kb on + strand, within IAI47_14750at 3112.799 kb on + strand, within IAI47_14750at 3112.800 kb on - strand, within IAI47_14750at 3112.800 kb on - strand, within IAI47_14750at 3112.800 kb on - strand, within IAI47_14750at 3112.800 kb on - strand, within IAI47_14750at 3112.800 kb on - strand, within IAI47_14750at 3112.800 kb on - strand, within IAI47_14750at 3112.815 kb on + strand, within IAI47_14750at 3112.823 kb on + strand, within IAI47_14750at 3112.849 kb on + strand, within IAI47_14750at 3112.849 kb on + strand, within IAI47_14750at 3112.849 kb on + strand, within IAI47_14750at 3112.865 kb on + strand, within IAI47_14750at 3112.888 kb on + strand, within IAI47_14750at 3112.889 kb on - strand, within IAI47_14750at 3112.949 kb on + strand, within IAI47_14750at 3112.950 kb on - strand, within IAI47_14750at 3112.971 kb on + strand, within IAI47_14750at 3112.972 kb on - strand, within IAI47_14750at 3113.045 kb on + strandat 3113.046 kb on - strandat 3113.046 kb on - strandat 3113.049 kb on + strandat 3113.049 kb on + strandat 3113.049 kb on + strandat 3113.050 kb on - strandat 3114.022 kb on - strandat 3114.079 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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3,112,084 + IAI47_14745 0.57 -0.3
3,112,085 - IAI47_14745 0.57 +1.4
3,112,085 - IAI47_14745 0.57 +0.3
3,112,085 - IAI47_14745 0.57 +1.2
3,112,232 + IAI47_14745 0.72 -1.7
3,112,232 + IAI47_14745 0.72 +2.8
3,112,233 - IAI47_14745 0.72 -0.0
3,112,233 - IAI47_14745 0.72 +0.7
3,112,246 + IAI47_14745 0.74 -1.9
3,112,246 + IAI47_14745 0.74 -0.8
3,112,246 + IAI47_14745 0.74 -0.9
3,112,247 - IAI47_14745 0.74 -0.8
3,112,247 - IAI47_14745 0.74 +0.2
3,112,247 - IAI47_14745 0.74 -0.2
3,112,247 - IAI47_14745 0.74 +0.2
3,112,247 - IAI47_14745 0.74 +0.1
3,112,247 - IAI47_14745 0.74 -0.9
3,112,308 + IAI47_14745 0.80 -0.4
3,112,309 - IAI47_14745 0.80 -2.4
3,112,309 - IAI47_14745 0.80 -0.9
3,112,309 - IAI47_14745 0.80 -1.1
3,112,378 - IAI47_14745 0.87 -1.8
3,112,452 + +1.3
3,112,452 + -0.7
3,112,453 - -1.8
3,112,471 + -0.9
3,112,471 + -0.4
3,112,472 - -0.9
3,112,472 - -1.0
3,112,472 - +1.2
3,112,472 - -1.8
3,112,490 + +1.4
3,112,491 - -0.9
3,112,491 - -1.8
3,112,538 + -1.1
3,112,538 + -2.2
3,112,539 - -0.3
3,112,539 - +0.5
3,112,539 - +0.2
3,112,549 + +0.3
3,112,549 + -1.5
3,112,550 - +0.7
3,112,550 - +1.1
3,112,550 - +0.9
3,112,561 + -1.9
3,112,588 + -0.2
3,112,589 - -0.0
3,112,589 - -0.5
3,112,589 - -2.0
3,112,619 + IAI47_14750 0.12 +1.0
3,112,619 + IAI47_14750 0.12 -1.6
3,112,620 - IAI47_14750 0.12 -1.0
3,112,620 - IAI47_14750 0.12 -0.1
3,112,620 - IAI47_14750 0.12 -1.2
3,112,620 - IAI47_14750 0.12 +1.0
3,112,620 - IAI47_14750 0.12 +0.5
3,112,620 - IAI47_14750 0.12 -2.2
3,112,634 + IAI47_14750 0.15 -1.9
3,112,634 + IAI47_14750 0.15 -1.8
3,112,635 - IAI47_14750 0.15 -0.2
3,112,635 - IAI47_14750 0.15 -0.2
3,112,694 + IAI47_14750 0.27 -1.6
3,112,694 + IAI47_14750 0.27 -0.9
3,112,695 - IAI47_14750 0.27 +0.3
3,112,695 - IAI47_14750 0.27 +0.1
3,112,695 - IAI47_14750 0.27 -1.1
3,112,703 + IAI47_14750 0.29 -1.1
3,112,704 - IAI47_14750 0.29 +0.5
3,112,766 + IAI47_14750 0.42 -0.2
3,112,766 + IAI47_14750 0.42 -2.0
3,112,767 - IAI47_14750 0.42 -0.4
3,112,767 - IAI47_14750 0.42 -1.5
3,112,781 + IAI47_14750 0.45 -1.8
3,112,799 + IAI47_14750 0.48 +0.8
3,112,800 - IAI47_14750 0.48 -0.6
3,112,800 - IAI47_14750 0.48 +1.1
3,112,800 - IAI47_14750 0.48 +0.6
3,112,800 - IAI47_14750 0.48 -1.4
3,112,800 - IAI47_14750 0.48 +0.9
3,112,800 - IAI47_14750 0.48 -1.1
3,112,815 + IAI47_14750 0.52 -1.2
3,112,823 + IAI47_14750 0.53 -1.2
3,112,849 + IAI47_14750 0.58 -0.8
3,112,849 + IAI47_14750 0.58 -0.3
3,112,849 + IAI47_14750 0.58 -0.7
3,112,865 + IAI47_14750 0.62 -1.5
3,112,888 + IAI47_14750 0.66 -2.0
3,112,889 - IAI47_14750 0.66 +2.8
3,112,949 + IAI47_14750 0.79 -2.2
3,112,950 - IAI47_14750 0.79 +0.2
3,112,971 + IAI47_14750 0.83 -0.7
3,112,972 - IAI47_14750 0.83 -0.5
3,113,045 + -0.8
3,113,046 - +0.1
3,113,046 - -0.5
3,113,049 + -2.0
3,113,049 + -1.1
3,113,049 + -1.3
3,113,050 - +0.8
3,114,022 - +1.2
3,114,079 - +2.0

Or see this region's nucleotide sequence