Strain Fitness in Pantoea sp. MT58 around IAI47_09125

Experiment: Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,924,843	-				+1.1
1,924,854	-				-0.2
1,924,854	-				+0.2
1,924,881	+				+0.6
1,924,881	+				+1.0
1,924,881	+				-0.1
1,924,882	-				-0.8
1,924,882	-				-0.1
1,924,886	-				+0.5
1,924,915	+				-2.5
1,924,916	-				+0.5
1,925,040	-				+0.2
1,925,081	+				+0.8
1,925,098	+				+0.9
1,925,099	-				+1.8
1,925,099	-				+1.5
1,925,099	-				+1.0
1,925,121	-				+1.4
1,925,123	-				+0.2
1,925,143	+		IAI47_09115	0.13	-0.8
1,925,143	+		IAI47_09115	0.13	-0.2
1,925,143	+		IAI47_09115	0.13	+1.3
1,925,143	+		IAI47_09115	0.13	+2.6
1,925,144	-		IAI47_09115	0.13	-0.2
1,925,144	-		IAI47_09115	0.13	+1.9
1,925,144	-		IAI47_09115	0.13	-1.1
1,925,144	-		IAI47_09115	0.13	-0.8
1,925,150	+		IAI47_09115	0.16	-0.1
1,925,150	+		IAI47_09115	0.16	+1.3
1,925,151	-		IAI47_09115	0.16	-1.6
1,925,161	-		IAI47_09115	0.20	-0.8
1,925,161	-		IAI47_09115	0.20	+2.9
1,925,161	-		IAI47_09115	0.20	+1.3
1,925,161	-		IAI47_09115	0.20	-0.3
1,925,217	+		IAI47_09115	0.43	-0.2
1,925,223	-		IAI47_09115	0.46	+1.2
1,925,249	+		IAI47_09115	0.56	+1.5
1,925,250	-		IAI47_09115	0.57	+1.0
1,925,250	-		IAI47_09115	0.57	+0.0
1,925,250	-		IAI47_09115	0.57	-0.8
1,925,255	+		IAI47_09115	0.59	-0.2
1,925,256	-		IAI47_09115	0.59	-1.1
1,925,270	+		IAI47_09115	0.65	+0.4
1,925,281	+		IAI47_09115	0.70	+1.6
1,925,281	+		IAI47_09115	0.70	-0.3
1,925,282	-		IAI47_09115	0.70	-0.7
1,925,316	+		IAI47_09115	0.84	+0.3
1,925,317	-		IAI47_09115	0.84	+1.4
1,925,317	-		IAI47_09115	0.84	-0.7
1,925,317	-		IAI47_09115	0.84	-1.3
1,925,317	-		IAI47_09115	0.84	-0.7
1,925,326	+		IAI47_09115	0.88	-0.8
1,925,352	+				-0.1
1,925,352	+				+3.6
1,925,352	+				-1.0
1,925,353	-				-0.1
1,925,366	+				-1.0
1,925,388	+				-0.4
1,925,388	+				+1.0
1,925,389	-				+0.3
1,925,389	-				+3.6
1,925,389	-				-0.5
1,925,452	-				-0.5
1,925,454	+				-0.5
1,925,454	+				-0.8
1,925,454	+				+0.6
1,925,454	+				-1.0
1,925,454	+				+1.3
1,925,454	+				+0.9
1,925,454	+				+1.7
1,925,454	+				+0.7
1,925,455	-				+0.3
1,925,455	-				-0.1
1,925,455	-				+1.0
1,925,470	+				-0.0
1,925,470	+				-0.3
1,925,483	-				+1.3
1,925,486	-				+0.0
1,925,486	-				+0.0
1,925,500	+				-0.3
1,925,500	+				+0.8
1,925,501	-				+0.6
1,925,501	-				-0.6
1,925,506	+				-0.4
1,925,506	+				-0.4
1,925,506	+				+1.9
1,925,506	+				+1.3
1,925,507	-				-1.3
1,925,522	+				+2.0
1,925,522	+				+1.0
1,925,522	+				+0.5
1,925,523	-				+0.5
1,925,544	+				-0.4
1,925,545	-				+0.6
1,925,545	-				-0.7
1,925,568	+				+0.7
1,925,568	+				+0.5
1,925,568	+				+1.4
1,925,569	-				+1.5
1,925,569	-				+1.6
1,925,569	-				+1.0
1,925,569	-				-0.7
1,925,569	-				-1.0
1,925,614	-		IAI47_09120	0.19	-0.3
1,925,614	-		IAI47_09120	0.19	+1.0
1,925,673	+		IAI47_09120	0.51	-0.1
1,925,676	+		IAI47_09120	0.53	-1.0
1,925,676	+		IAI47_09120	0.53	+0.7
1,925,702	+		IAI47_09120	0.67	-0.4
1,925,702	+		IAI47_09120	0.67	+1.8
1,925,703	-		IAI47_09120	0.67	+1.0
1,925,703	-		IAI47_09120	0.67	+0.2
1,925,748	+				-0.5
1,925,748	+				-0.3
1,925,748	+				-0.1
1,925,755	+				-0.2
1,925,755	+				+2.0
1,925,755	+				-0.8
1,925,755	+				-0.5
1,925,755	+				-0.1
1,925,755	+				+0.2
1,925,756	-				+1.2
1,925,781	+				+1.8
1,925,781	+				-0.2
1,925,838	+				-0.3
1,925,839	-				+2.1
1,925,880	+		IAI47_09125	0.13	+1.1
1,925,898	+		IAI47_09125	0.20	+2.6
1,925,898	+		IAI47_09125	0.20	+0.8
1,925,899	-		IAI47_09125	0.20	+2.5
1,925,899	-		IAI47_09125	0.20	+1.3
1,925,933	+		IAI47_09125	0.31	+0.3
1,925,933	+		IAI47_09125	0.31	+2.6
1,925,934	-		IAI47_09125	0.32	+1.3
1,925,934	-		IAI47_09125	0.32	+0.1
1,925,934	-		IAI47_09125	0.32	+0.6
1,925,934	-		IAI47_09125	0.32	+1.4
1,925,934	-		IAI47_09125	0.32	+1.6
1,925,934	-		IAI47_09125	0.32	+0.8
1,925,934	-		IAI47_09125	0.32	+0.4
1,925,993	-		IAI47_09125	0.52	-0.6
1,925,993	-		IAI47_09125	0.52	-0.4
1,926,053	-		IAI47_09125	0.72	+0.8
1,926,085	+		IAI47_09125	0.82	+0.0
1,926,086	-		IAI47_09125	0.83	+1.0
1,926,086	-		IAI47_09125	0.83	+1.0
1,926,109	+				+0.6
1,926,109	+				-0.3
1,926,109	+				-0.2
1,926,110	-				-0.1
1,926,120	+				+1.0
1,926,120	+				-0.4
1,926,121	-				-1.5
1,926,129	+				+0.1
1,926,129	+				-0.3
1,926,129	+				+1.4
1,926,129	+				+0.9
1,926,129	+				+0.8
1,926,130	-				+0.0
1,926,130	-				+1.1
1,926,130	-				+2.3
1,926,130	-				+3.5
1,926,137	+				-0.8
1,926,137	+				-1.5
1,926,137	+				+0.2
1,926,188	+				+1.0
1,926,188	+				+1.8
1,926,189	-				-1.1
1,926,189	-				+1.2
1,926,189	-				+0.5
1,926,189	-				+3.6
1,926,189	-				-1.1
1,926,189	-				-0.5
1,926,208	+				+0.8
1,926,209	-				+0.1
1,926,229	+				+1.6
1,926,229	+				-0.2
1,926,229	+				+0.6
1,926,230	-				+0.3
1,926,230	-				+1.0
1,926,230	-				-0.1
1,926,230	-				+1.5
1,926,289	+				+0.5
1,926,333	+				+1.4
1,926,333	+				+2.8
1,926,333	+				+2.3
1,926,348	+				+2.0
1,926,348	+				+1.4
1,926,348	+				+3.6
1,926,356	+				+1.1
1,926,356	+				+1.3
1,927,068	+				-0.3
1,927,069	-				+1.5
1,927,115	+				+0.3