Strain Fitness in Pantoea sp. MT58 around IAI47_05970

Experiment: Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,220,256	+		IAI47_05960	0.57	-0.4
1,220,256	+		IAI47_05960	0.57	+0.3
1,220,257	-		IAI47_05960	0.57	-1.5
1,220,257	-		IAI47_05960	0.57	-1.2
1,220,257	-		IAI47_05960	0.57	+0.4
1,220,313	+		IAI47_05960	0.62	-0.7
1,220,313	+		IAI47_05960	0.62	+0.4
1,220,313	+		IAI47_05960	0.62	-0.6
1,220,313	+		IAI47_05960	0.62	-1.4
1,220,314	-		IAI47_05960	0.62	-2.0
1,220,314	-		IAI47_05960	0.62	+2.3
1,220,314	-		IAI47_05960	0.62	+0.6
1,220,314	-		IAI47_05960	0.62	-0.6
1,220,319	+		IAI47_05960	0.63	-1.0
1,220,319	+		IAI47_05960	0.63	+0.7
1,220,319	+		IAI47_05960	0.63	-1.5
1,220,319	+		IAI47_05960	0.63	+0.4
1,220,320	-		IAI47_05960	0.63	-0.5
1,220,320	-		IAI47_05960	0.63	-1.4
1,220,320	-		IAI47_05960	0.63	+0.4
1,220,322	+		IAI47_05960	0.63	-0.6
1,220,323	-		IAI47_05960	0.63	-0.3
1,220,356	+		IAI47_05960	0.66	-1.4
1,220,356	+		IAI47_05960	0.66	+1.2
1,220,357	-		IAI47_05960	0.66	-0.3
1,220,357	-		IAI47_05960	0.66	+1.9
1,220,364	-		IAI47_05960	0.66	-2.1
1,220,412	+		IAI47_05960	0.71	-0.0
1,220,412	+		IAI47_05960	0.71	-1.6
1,220,413	-		IAI47_05960	0.71	-0.1
1,220,413	-		IAI47_05960	0.71	-0.2
1,220,433	-		IAI47_05960	0.73	+0.0
1,220,440	+		IAI47_05960	0.73	+0.4
1,220,440	+		IAI47_05960	0.73	+0.3
1,220,440	+		IAI47_05960	0.73	+0.1
1,220,440	+		IAI47_05960	0.73	-0.6
1,220,440	+		IAI47_05960	0.73	+0.1
1,220,441	-		IAI47_05960	0.73	-1.0
1,220,441	-		IAI47_05960	0.73	-0.0
1,220,441	-		IAI47_05960	0.73	+0.9
1,220,441	-		IAI47_05960	0.73	-0.1
1,220,441	-		IAI47_05960	0.73	-0.6
1,220,441	-		IAI47_05960	0.73	+1.3
1,220,442	+		IAI47_05960	0.73	-0.3
1,220,442	+		IAI47_05960	0.73	-0.5
1,220,442	+		IAI47_05960	0.73	-0.0
1,220,442	+		IAI47_05960	0.73	+0.1
1,220,442	+		IAI47_05960	0.73	+0.4
1,220,442	+		IAI47_05960	0.73	-1.3
1,220,442	+		IAI47_05960	0.73	-1.5
1,220,442	+		IAI47_05960	0.73	-0.8
1,220,442	+		IAI47_05960	0.73	-1.6
1,220,442	+		IAI47_05960	0.73	+0.2
1,220,442	+		IAI47_05960	0.73	-0.6
1,220,442	+		IAI47_05960	0.73	-1.3
1,220,442	+		IAI47_05960	0.73	-1.1
1,220,443	-		IAI47_05960	0.73	+0.4
1,220,443	-		IAI47_05960	0.73	+1.1
1,220,443	-		IAI47_05960	0.73	+0.7
1,220,443	-		IAI47_05960	0.73	+0.6
1,220,443	-		IAI47_05960	0.73	+0.4
1,220,443	-		IAI47_05960	0.73	+0.7
1,220,443	-		IAI47_05960	0.73	-1.1
1,220,443	-		IAI47_05960	0.73	-1.0
1,220,581	+		IAI47_05960	0.85	+1.7
1,220,582	-		IAI47_05960	0.86	+1.0
1,220,610	+		IAI47_05960	0.88	-1.6
1,220,610	+		IAI47_05960	0.88	+2.7
1,220,613	+		IAI47_05960	0.88	+1.2
1,220,613	+		IAI47_05960	0.88	+0.4
1,220,613	+		IAI47_05960	0.88	+0.9
1,220,613	+		IAI47_05960	0.88	-0.5
1,220,614	-		IAI47_05960	0.88	-0.5
1,220,614	-		IAI47_05960	0.88	+0.9
1,220,614	-		IAI47_05960	0.88	+0.8
1,220,614	-		IAI47_05960	0.88	-0.2
1,220,614	-		IAI47_05960	0.88	+0.1
1,220,619	+		IAI47_05960	0.89	+1.5
1,220,620	-		IAI47_05960	0.89	+0.7
1,220,690	+				+1.1
1,220,690	+				-0.5
1,220,691	-				-1.9
1,220,753	+				-0.3
1,220,753	+				-0.9
1,220,755	+				-0.5
1,220,755	+				-0.6
1,220,755	+				+0.2
1,220,755	+				-0.5
1,220,755	+				+0.5
1,220,755	+				+0.5
1,220,755	+				+1.3
1,220,755	+				+0.8
1,220,755	+				-0.6
1,220,755	+				-0.7
1,220,755	+				+0.6
1,220,755	+				+0.2
1,220,755	+				+1.6
1,220,755	+				-1.3
1,220,755	+				+1.3
1,220,755	+				+0.7
1,220,755	+				-1.2
1,220,756	-				+0.2
1,220,756	-				+1.1
1,220,756	-				+1.0
1,220,756	-				+2.5
1,220,756	-				+0.8
1,220,756	-				-0.5
1,220,756	-				-0.3
1,220,756	-				-0.6
1,220,756	-				+0.9
1,220,756	-				-1.9
1,220,756	-				-0.2
1,220,756	-				-1.5
1,220,756	-				-1.6
1,220,763	+				+0.4
1,220,763	+				-0.1
1,220,763	+				+1.9
1,220,763	+				+0.1
1,220,764	-				+1.9
1,220,764	-				-0.7
1,220,764	-				-0.0
1,220,764	-				+0.4
1,220,764	-				-0.2
1,220,764	-				-1.1
1,220,767	+				-0.6
1,220,767	+				-1.3
1,220,768	-				-2.0
1,220,768	-				+2.0
1,220,768	-				+0.3
1,220,776	-				+0.4
1,220,784	+				+0.7
1,220,784	+				-0.5
1,220,784	+				-0.1
1,220,785	-				-0.0
1,220,785	-				+0.7
1,220,878	-		IAI47_05965	0.27	+2.0
1,220,948	+		IAI47_05965	0.43	+1.4
1,220,949	-		IAI47_05965	0.43	+0.4
1,220,978	+		IAI47_05965	0.50	+0.5
1,220,979	-		IAI47_05965	0.50	-0.2
1,220,982	+		IAI47_05965	0.51	-0.2
1,220,983	-		IAI47_05965	0.51	-0.9
1,221,001	+		IAI47_05965	0.55	+2.5
1,221,001	+		IAI47_05965	0.55	+1.3
1,221,002	-		IAI47_05965	0.55	+0.3
1,221,002	-		IAI47_05965	0.55	+0.6
1,221,002	-		IAI47_05965	0.55	+0.3
1,221,002	-		IAI47_05965	0.55	+0.1
1,221,044	+		IAI47_05965	0.65	+0.5
1,221,044	+		IAI47_05965	0.65	-1.5
1,221,044	+		IAI47_05965	0.65	+0.7
1,221,044	+		IAI47_05965	0.65	+0.2
1,221,044	+		IAI47_05965	0.65	+0.2
1,221,045	-		IAI47_05965	0.65	-0.7
1,221,045	-		IAI47_05965	0.65	-0.7
1,221,045	-		IAI47_05965	0.65	+0.2
1,221,045	-		IAI47_05965	0.65	+0.7
1,221,045	-		IAI47_05965	0.65	-2.0
1,221,045	-		IAI47_05965	0.65	+2.7
1,221,045	-		IAI47_05965	0.65	-0.2
1,221,045	-		IAI47_05965	0.65	-2.6
1,221,045	-		IAI47_05965	0.65	-0.4
1,221,060	+		IAI47_05965	0.68	+1.5
1,221,060	+		IAI47_05965	0.68	+0.8
1,221,061	-		IAI47_05965	0.69	-0.3
1,221,061	-		IAI47_05965	0.69	-1.7
1,221,061	-		IAI47_05965	0.69	+0.3
1,221,124	-		IAI47_05965	0.83	+1.7
1,221,225	+				-0.6
1,221,225	+				-0.8
1,221,226	-				+0.4
1,221,230	-				-1.2
1,221,230	-				-1.3
1,221,269	+		IAI47_05970	0.16	+0.8
1,221,269	+		IAI47_05970	0.16	-1.4
1,221,269	+		IAI47_05970	0.16	+0.7
1,221,270	-		IAI47_05970	0.16	-1.1
1,221,350	+		IAI47_05970	0.35	+2.0
1,221,350	+		IAI47_05970	0.35	+0.9
1,221,351	-		IAI47_05970	0.35	+2.3
1,221,351	-		IAI47_05970	0.35	+0.3
1,221,354	+		IAI47_05970	0.36	-0.1
1,221,354	+		IAI47_05970	0.36	+0.3
1,221,355	-		IAI47_05970	0.36	-1.3
1,221,355	-		IAI47_05970	0.36	+0.2
1,221,355	-		IAI47_05970	0.36	-1.4
1,221,417	+		IAI47_05970	0.50	-0.4
1,221,418	-		IAI47_05970	0.51	-0.8
1,221,431	+		IAI47_05970	0.54	+0.2
1,221,431	+		IAI47_05970	0.54	+0.3
1,221,432	-		IAI47_05970	0.54	-2.0
1,221,432	-		IAI47_05970	0.54	-1.3
1,221,486	-		IAI47_05970	0.67	-1.6
1,221,525	+		IAI47_05970	0.76	+4.1
1,221,525	+		IAI47_05970	0.76	+3.0
1,221,525	+		IAI47_05970	0.76	+2.5
1,221,525	+		IAI47_05970	0.76	+2.6
1,221,525	+		IAI47_05970	0.76	-0.8
1,221,525	+		IAI47_05970	0.76	+0.6
1,221,525	+		IAI47_05970	0.76	+1.9
1,221,525	+		IAI47_05970	0.76	+0.1
1,221,526	-		IAI47_05970	0.76	-1.0
1,221,526	-		IAI47_05970	0.76	-1.3
1,221,526	-		IAI47_05970	0.76	+2.0
1,221,526	-		IAI47_05970	0.76	-0.9
1,221,526	-		IAI47_05970	0.76	-1.6
1,221,684	+		IAI47_05975	0.14	-0.0
1,221,693	+		IAI47_05975	0.20	+0.2
1,221,694	-		IAI47_05975	0.20	-0.4
1,221,718	+		IAI47_05975	0.36	+1.0
1,221,718	+		IAI47_05975	0.36	+0.0
1,221,719	-		IAI47_05975	0.37	-0.6
1,221,719	-		IAI47_05975	0.37	+0.8
1,221,754	+		IAI47_05975	0.59	-0.7
1,221,755	-		IAI47_05975	0.60	+1.6
1,221,770	+		IAI47_05975	0.70	+0.9
1,221,770	+		IAI47_05975	0.70	+1.1
1,221,770	+		IAI47_05975	0.70	+0.2
1,221,771	-		IAI47_05975	0.71	+0.9
1,221,771	-		IAI47_05975	0.71	-1.3
1,221,771	-		IAI47_05975	0.71	-1.0
1,221,771	-		IAI47_05975	0.71	+0.8
1,221,803	+				-0.8
1,221,804	-				+0.4
1,221,819	+				+0.3
1,221,819	+				+0.0
1,221,819	+				+0.6
1,221,820	-				-0.5
1,221,897	+				+2.1
1,221,898	-				-1.5
1,221,898	-				-0.0
1,221,898	-				-1.5
1,221,939	+				+0.3
1,221,939	+				+2.1
1,221,940	-				-0.1
1,221,969	+				+0.4
1,221,970	-				-0.7
1,221,970	-				-1.7
1,221,990	+				-1.3
1,221,997	+				+2.0
1,222,051	+		IAI47_05980	0.12	+0.3
1,222,052	-		IAI47_05980	0.12	-1.0
1,222,125	+		IAI47_05980	0.16	+0.4
1,222,125	+		IAI47_05980	0.16	-0.7
1,222,125	+		IAI47_05980	0.16	+1.7
1,222,126	-		IAI47_05980	0.16	+2.4
1,222,161	-		IAI47_05980	0.17	-0.5
1,222,191	+		IAI47_05980	0.19	+2.9
1,222,191	+		IAI47_05980	0.19	+0.2
1,222,192	-		IAI47_05980	0.19	-0.5
1,222,192	-		IAI47_05980	0.19	+0.2
1,222,192	-		IAI47_05980	0.19	-0.1
1,222,216	-		IAI47_05980	0.20	-1.3
1,222,249	+		IAI47_05980	0.22	-0.2
1,222,250	-		IAI47_05980	0.22	-1.0
1,222,250	-		IAI47_05980	0.22	+0.1
1,222,250	-		IAI47_05980	0.22	+3.0
1,222,250	-		IAI47_05980	0.22	-1.4
1,222,250	-		IAI47_05980	0.22	-0.8
1,222,250	-		IAI47_05980	0.22	-2.3
1,222,250	-		IAI47_05980	0.22	+1.1
1,222,252	+		IAI47_05980	0.22	+0.5
1,222,253	-		IAI47_05980	0.22	+1.1
1,222,253	-		IAI47_05980	0.22	+1.0
1,222,267	+		IAI47_05980	0.23	-2.5
1,222,268	-		IAI47_05980	0.23	+0.8
1,222,369	+		IAI47_05980	0.28	-1.7
1,222,369	+		IAI47_05980	0.28	+1.6
1,222,369	+		IAI47_05980	0.28	+1.1
1,222,369	+		IAI47_05980	0.28	+1.5
1,222,370	-		IAI47_05980	0.28	-0.9
1,222,370	-		IAI47_05980	0.28	-0.5
1,222,370	-		IAI47_05980	0.28	-0.0
1,222,392	+		IAI47_05980	0.29	+1.8
1,222,393	-		IAI47_05980	0.29	-0.3
1,222,407	+		IAI47_05980	0.29	-0.1
1,222,407	+		IAI47_05980	0.29	+0.3
1,222,524	+		IAI47_05980	0.35	-0.4
1,222,524	+		IAI47_05980	0.35	+1.5
1,222,525	-		IAI47_05980	0.35	+0.7
1,222,525	-		IAI47_05980	0.35	-0.7
1,222,538	+		IAI47_05980	0.36	-0.2
1,222,539	-		IAI47_05980	0.36	-1.1
1,222,539	-		IAI47_05980	0.36	+0.8
1,222,574	+		IAI47_05980	0.38	-1.6
1,222,613	+		IAI47_05980	0.39	-0.3
1,222,613	+		IAI47_05980	0.39	+0.4