Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22080

Experiment: Chlorite 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22075 and BWI76_RS22080 are separated by 241 nucleotidesBWI76_RS22080 and BWI76_RS22085 overlap by 11 nucleotidesBWI76_RS22085 and BWI76_RS22090 are separated by 91 nucleotides BWI76_RS22075: BWI76_RS22075 - glycine betaine ABC transporter substrate-binding protein, at 4,608,752 to 4,609,747 _RS22075 BWI76_RS22080: BWI76_RS22080 - AzlC family protein, at 4,609,989 to 4,610,735 _RS22080 BWI76_RS22085: BWI76_RS22085 - L-valine transporter subunit YgaH, at 4,610,725 to 4,611,060 _RS22085 BWI76_RS22090: BWI76_RS22090 - transcriptional regulator, at 4,611,152 to 4,611,682 _RS22090 Position (kb) 4609 4610 4611Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 4609.027 kb on + strand, within BWI76_RS22075at 4609.129 kb on + strand, within BWI76_RS22075at 4609.229 kb on + strand, within BWI76_RS22075at 4609.287 kb on - strand, within BWI76_RS22075at 4609.439 kb on + strand, within BWI76_RS22075at 4609.458 kb on - strand, within BWI76_RS22075at 4609.538 kb on + strand, within BWI76_RS22075at 4609.551 kb on - strand, within BWI76_RS22075at 4609.757 kb on + strandat 4609.819 kb on - strandat 4609.839 kb on - strandat 4609.922 kb on - strandat 4609.924 kb on + strandat 4610.281 kb on - strand, within BWI76_RS22080at 4610.350 kb on + strand, within BWI76_RS22080at 4610.360 kb on - strand, within BWI76_RS22080at 4610.433 kb on + strand, within BWI76_RS22080at 4610.433 kb on + strand, within BWI76_RS22080at 4610.523 kb on + strand, within BWI76_RS22080at 4610.538 kb on - strand, within BWI76_RS22080at 4610.557 kb on - strand, within BWI76_RS22080at 4610.663 kb on + strandat 4610.697 kb on + strandat 4610.699 kb on - strandat 4610.710 kb on - strandat 4610.737 kb on + strandat 4610.964 kb on - strand, within BWI76_RS22085at 4611.016 kb on + strand, within BWI76_RS22085at 4611.016 kb on + strand, within BWI76_RS22085at 4611.504 kb on + strand, within BWI76_RS22090at 4611.570 kb on + strand, within BWI76_RS22090at 4611.615 kb on + strand, within BWI76_RS22090at 4611.683 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 2.5 mM
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4,609,027 + BWI76_RS22075 0.28 -1.4
4,609,129 + BWI76_RS22075 0.38 -0.4
4,609,229 + BWI76_RS22075 0.48 -1.1
4,609,287 - BWI76_RS22075 0.54 -0.5
4,609,439 + BWI76_RS22075 0.69 -0.6
4,609,458 - BWI76_RS22075 0.71 -0.8
4,609,538 + BWI76_RS22075 0.79 +0.1
4,609,551 - BWI76_RS22075 0.80 -0.5
4,609,757 + +0.6
4,609,819 - +0.1
4,609,839 - +0.4
4,609,922 - -0.4
4,609,924 + +0.0
4,610,281 - BWI76_RS22080 0.39 +0.6
4,610,350 + BWI76_RS22080 0.48 +1.5
4,610,360 - BWI76_RS22080 0.50 +0.2
4,610,433 + BWI76_RS22080 0.59 +1.8
4,610,433 + BWI76_RS22080 0.59 +0.2
4,610,523 + BWI76_RS22080 0.71 +0.2
4,610,538 - BWI76_RS22080 0.73 -0.4
4,610,557 - BWI76_RS22080 0.76 +0.3
4,610,663 + +3.5
4,610,697 + +3.4
4,610,699 - -0.7
4,610,710 - -1.0
4,610,737 + +4.0
4,610,964 - BWI76_RS22085 0.71 +0.4
4,611,016 + BWI76_RS22085 0.87 +6.4
4,611,016 + BWI76_RS22085 0.87 +4.2
4,611,504 + BWI76_RS22090 0.66 -1.3
4,611,570 + BWI76_RS22090 0.79 -1.0
4,611,615 + BWI76_RS22090 0.87 -0.7
4,611,683 + -1.7

Or see this region's nucleotide sequence