Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14215

Experiment: Chlorite 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS14210 and BWI76_RS14215 are separated by 235 nucleotidesBWI76_RS14215 and BWI76_RS14220 are separated by 21 nucleotidesBWI76_RS14220 and BWI76_RS14225 are separated by 53 nucleotides BWI76_RS14210: BWI76_RS14210 - LysR family transcriptional regulator, at 2,974,662 to 2,975,624 _RS14210 BWI76_RS14215: BWI76_RS14215 - hypothetical protein, at 2,975,860 to 2,976,141 _RS14215 BWI76_RS14220: BWI76_RS14220 - hypothetical protein, at 2,976,163 to 2,976,504 _RS14220 BWI76_RS14225: BWI76_RS14225 - anti-ECF sigma factor ChrR, at 2,976,558 to 2,977,229 _RS14225 Position (kb) 2975 2976 2977Strain fitness (log2 ratio) -1 0 1at 2974.902 kb on + strand, within BWI76_RS14210at 2974.902 kb on + strand, within BWI76_RS14210at 2974.904 kb on - strand, within BWI76_RS14210at 2974.957 kb on - strand, within BWI76_RS14210at 2974.998 kb on + strand, within BWI76_RS14210at 2975.194 kb on + strand, within BWI76_RS14210at 2975.275 kb on - strand, within BWI76_RS14210at 2975.500 kb on + strand, within BWI76_RS14210at 2975.969 kb on + strand, within BWI76_RS14215at 2975.970 kb on - strand, within BWI76_RS14215at 2975.998 kb on - strand, within BWI76_RS14215at 2976.025 kb on - strand, within BWI76_RS14215at 2976.097 kb on + strand, within BWI76_RS14215at 2976.097 kb on + strand, within BWI76_RS14215at 2976.110 kb on + strand, within BWI76_RS14215at 2976.123 kb on + strandat 2976.133 kb on - strandat 2976.672 kb on + strand, within BWI76_RS14225at 2976.680 kb on - strand, within BWI76_RS14225

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 2.5 mM
remove
2,974,902 + BWI76_RS14210 0.25 -0.8
2,974,902 + BWI76_RS14210 0.25 +0.1
2,974,904 - BWI76_RS14210 0.25 -0.3
2,974,957 - BWI76_RS14210 0.31 -0.5
2,974,998 + BWI76_RS14210 0.35 -1.5
2,975,194 + BWI76_RS14210 0.55 +0.2
2,975,275 - BWI76_RS14210 0.64 +0.4
2,975,500 + BWI76_RS14210 0.87 -0.0
2,975,969 + BWI76_RS14215 0.39 +1.3
2,975,970 - BWI76_RS14215 0.39 -0.3
2,975,998 - BWI76_RS14215 0.49 -0.6
2,976,025 - BWI76_RS14215 0.59 +0.4
2,976,097 + BWI76_RS14215 0.84 +0.7
2,976,097 + BWI76_RS14215 0.84 +1.0
2,976,110 + BWI76_RS14215 0.89 +1.0
2,976,123 + +1.0
2,976,133 - +0.2
2,976,672 + BWI76_RS14225 0.17 -0.4
2,976,680 - BWI76_RS14225 0.18 -0.4

Or see this region's nucleotide sequence