Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11410

Experiment: Chlorite 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11405 and BWI76_RS11410 are separated by 88 nucleotidesBWI76_RS11410 and BWI76_RS11415 are separated by 128 nucleotidesBWI76_RS11415 and BWI76_RS11420 are separated by 314 nucleotidesBWI76_RS11420 and BWI76_RS11425 are separated by 35 nucleotides BWI76_RS11405: BWI76_RS11405 - lipid A biosynthesis acyltransferase, at 2,403,823 to 2,404,737 _RS11405 BWI76_RS11410: BWI76_RS11410 - leucine efflux protein, at 2,404,826 to 2,405,464 _RS11410 BWI76_RS11415: BWI76_RS11415 - hypothetical protein, at 2,405,593 to 2,405,856 _RS11415 BWI76_RS11420: BWI76_RS11420 - hypothetical protein, at 2,406,171 to 2,406,368 _RS11420 BWI76_RS11425: BWI76_RS11425 - GAF domain/diguanylate cyclase, at 2,406,404 to 2,407,417 _RS11425 Position (kb) 2404 2405 2406Strain fitness (log2 ratio) -2 -1 0 1 2at 2403.858 kb on + strandat 2403.875 kb on + strandat 2403.875 kb on + strandat 2403.875 kb on + strandat 2403.875 kb on + strandat 2403.875 kb on + strandat 2403.875 kb on + strandat 2403.875 kb on + strandat 2403.875 kb on + strandat 2403.880 kb on + strandat 2403.881 kb on + strandat 2403.883 kb on - strandat 2403.883 kb on - strandat 2403.883 kb on - strandat 2403.883 kb on - strandat 2403.883 kb on - strandat 2403.885 kb on + strandat 2403.886 kb on + strandat 2403.886 kb on + strandat 2403.886 kb on + strandat 2403.886 kb on + strandat 2403.886 kb on + strandat 2403.886 kb on + strandat 2403.886 kb on + strandat 2403.886 kb on + strandat 2403.886 kb on + strandat 2403.886 kb on + strandat 2403.886 kb on + strandat 2403.891 kb on + strandat 2403.893 kb on - strandat 2403.894 kb on - strandat 2403.896 kb on + strandat 2403.907 kb on + strandat 2403.912 kb on + strandat 2403.920 kb on - strand, within BWI76_RS11405at 2403.920 kb on - strand, within BWI76_RS11405at 2403.920 kb on - strand, within BWI76_RS11405at 2403.942 kb on - strandat 2403.968 kb on + strand, within BWI76_RS11405at 2404.084 kb on - strand, within BWI76_RS11405at 2404.107 kb on + strand, within BWI76_RS11405at 2404.228 kb on - strand, within BWI76_RS11405at 2404.246 kb on + strand, within BWI76_RS11405at 2404.560 kb on + strand, within BWI76_RS11405at 2404.562 kb on + strand, within BWI76_RS11405at 2404.568 kb on - strand, within BWI76_RS11405at 2404.570 kb on - strand, within BWI76_RS11405at 2404.570 kb on - strand, within BWI76_RS11405at 2404.570 kb on - strand, within BWI76_RS11405at 2404.606 kb on - strand, within BWI76_RS11405at 2404.609 kb on + strand, within BWI76_RS11405at 2404.688 kb on - strandat 2404.777 kb on + strandat 2404.785 kb on - strandat 2404.877 kb on + strandat 2404.877 kb on + strandat 2405.126 kb on - strand, within BWI76_RS11410at 2405.253 kb on - strand, within BWI76_RS11410at 2405.461 kb on - strandat 2405.737 kb on - strandat 2405.958 kb on - strandat 2405.973 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 2.5 mM
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2,403,858 + +1.6
2,403,875 + -2.5
2,403,875 + +0.1
2,403,875 + +0.2
2,403,875 + +0.3
2,403,875 + -0.1
2,403,875 + +0.8
2,403,875 + -0.4
2,403,875 + +0.4
2,403,880 + -1.1
2,403,881 + -1.1
2,403,883 - -1.5
2,403,883 - -0.7
2,403,883 - +0.0
2,403,883 - +0.5
2,403,883 - +1.2
2,403,885 + -0.8
2,403,886 + -0.9
2,403,886 + +0.2
2,403,886 + -0.6
2,403,886 + -0.2
2,403,886 + +0.2
2,403,886 + -0.2
2,403,886 + +1.4
2,403,886 + -0.4
2,403,886 + +0.1
2,403,886 + +0.4
2,403,886 + -0.5
2,403,891 + -0.1
2,403,893 - -0.3
2,403,894 - -1.1
2,403,896 + +0.4
2,403,907 + +1.3
2,403,912 + +0.1
2,403,920 - BWI76_RS11405 0.11 +0.7
2,403,920 - BWI76_RS11405 0.11 +0.0
2,403,920 - BWI76_RS11405 0.11 -0.3
2,403,942 - +0.8
2,403,968 + BWI76_RS11405 0.16 -1.1
2,404,084 - BWI76_RS11405 0.29 +0.1
2,404,107 + BWI76_RS11405 0.31 +0.4
2,404,228 - BWI76_RS11405 0.44 +0.7
2,404,246 + BWI76_RS11405 0.46 +0.4
2,404,560 + BWI76_RS11405 0.81 +0.1
2,404,562 + BWI76_RS11405 0.81 -1.3
2,404,568 - BWI76_RS11405 0.81 +0.9
2,404,570 - BWI76_RS11405 0.82 -1.0
2,404,570 - BWI76_RS11405 0.82 -0.6
2,404,570 - BWI76_RS11405 0.82 +0.8
2,404,606 - BWI76_RS11405 0.86 -0.0
2,404,609 + BWI76_RS11405 0.86 -0.2
2,404,688 - -0.7
2,404,777 + -0.4
2,404,785 - -0.6
2,404,877 + -0.9
2,404,877 + +1.0
2,405,126 - BWI76_RS11410 0.47 -0.5
2,405,253 - BWI76_RS11410 0.67 -0.4
2,405,461 - -0.3
2,405,737 - +1.8
2,405,958 - -0.1
2,405,973 - -0.1

Or see this region's nucleotide sequence