Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5035

Experiment: D-Mannose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_5034 and Psyr_5035 are separated by 170 nucleotidesPsyr_5035 and Psyr_5036 are separated by 190 nucleotides Psyr_5034: Psyr_5034 - CBS:Protein of unknown function DUF21:Transporter-associated region, at 5,973,194 to 5,974,534 _5034 Psyr_5035: Psyr_5035 - Peptidase M23B, at 5,974,705 to 5,975,607 _5035 Psyr_5036: Psyr_5036 - Response regulator receiver, at 5,975,798 to 5,976,682 _5036 Position (kb) 5974 5975 5976Strain fitness (log2 ratio) -3 -2 -1 0 1at 5973.773 kb on + strand, within Psyr_5034at 5973.774 kb on - strand, within Psyr_5034at 5973.992 kb on + strand, within Psyr_5034at 5973.992 kb on + strand, within Psyr_5034at 5973.992 kb on + strand, within Psyr_5034at 5973.992 kb on + strand, within Psyr_5034at 5973.993 kb on - strand, within Psyr_5034at 5973.993 kb on - strand, within Psyr_5034at 5973.993 kb on - strand, within Psyr_5034at 5974.218 kb on - strand, within Psyr_5034at 5974.281 kb on + strand, within Psyr_5034at 5974.281 kb on + strand, within Psyr_5034at 5974.281 kb on + strand, within Psyr_5034at 5974.281 kb on + strand, within Psyr_5034at 5974.281 kb on + strand, within Psyr_5034at 5974.281 kb on + strand, within Psyr_5034at 5974.282 kb on - strandat 5974.282 kb on - strand, within Psyr_5034at 5974.412 kb on + strandat 5974.412 kb on + strandat 5974.412 kb on + strandat 5974.412 kb on + strandat 5974.412 kb on + strandat 5974.412 kb on + strandat 5974.413 kb on - strandat 5974.413 kb on - strandat 5974.688 kb on + strandat 5974.688 kb on + strandat 5974.688 kb on + strandat 5974.688 kb on + strandat 5974.689 kb on - strandat 5974.689 kb on - strandat 5974.689 kb on - strandat 5974.689 kb on - strandat 5974.689 kb on - strandat 5974.689 kb on - strandat 5975.099 kb on + strand, within Psyr_5035at 5975.099 kb on + strand, within Psyr_5035at 5975.100 kb on - strand, within Psyr_5035at 5975.100 kb on - strand, within Psyr_5035at 5975.162 kb on + strand, within Psyr_5035at 5975.163 kb on - strand, within Psyr_5035at 5975.163 kb on - strand, within Psyr_5035at 5975.163 kb on - strand, within Psyr_5035at 5975.163 kb on - strand, within Psyr_5035at 5975.216 kb on + strand, within Psyr_5035at 5975.216 kb on + strand, within Psyr_5035at 5975.216 kb on + strand, within Psyr_5035at 5975.217 kb on - strand, within Psyr_5035at 5975.217 kb on - strand, within Psyr_5035at 5975.217 kb on - strand, within Psyr_5035at 5975.217 kb on - strand, within Psyr_5035at 5975.217 kb on - strand, within Psyr_5035at 5975.217 kb on - strand, within Psyr_5035at 5975.217 kb on - strand, within Psyr_5035at 5975.217 kb on - strand, within Psyr_5035at 5975.217 kb on - strand, within Psyr_5035at 5975.369 kb on + strand, within Psyr_5035at 5975.370 kb on - strand, within Psyr_5035at 5975.370 kb on - strand, within Psyr_5035at 5975.370 kb on - strand, within Psyr_5035at 5975.370 kb on - strand, within Psyr_5035at 5975.387 kb on + strand, within Psyr_5035at 5975.387 kb on + strand, within Psyr_5035at 5975.388 kb on - strand, within Psyr_5035at 5975.388 kb on - strand, within Psyr_5035at 5975.388 kb on - strand, within Psyr_5035at 5975.388 kb on - strand, within Psyr_5035at 5975.398 kb on + strand, within Psyr_5035at 5975.398 kb on + strand, within Psyr_5035at 5975.399 kb on - strand, within Psyr_5035at 5975.399 kb on - strand, within Psyr_5035at 5975.535 kb on + strandat 5975.536 kb on - strandat 5975.536 kb on - strandat 5975.536 kb on - strandat 5975.537 kb on + strandat 5975.646 kb on - strandat 5975.646 kb on - strandat 5975.646 kb on - strandat 5975.742 kb on + strandat 5975.742 kb on + strandat 5975.743 kb on - strandat 5975.856 kb on + strandat 5975.856 kb on + strandat 5975.857 kb on - strandat 5975.857 kb on - strandat 5976.017 kb on + strand, within Psyr_5036at 5976.453 kb on + strand, within Psyr_5036at 5976.453 kb on + strand, within Psyr_5036at 5976.589 kb on + strand, within Psyr_5036at 5976.590 kb on - strand, within Psyr_5036at 5976.607 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
remove
5,973,773 + Psyr_5034 0.43 -0.3
5,973,774 - Psyr_5034 0.43 -0.5
5,973,992 + Psyr_5034 0.60 -0.9
5,973,992 + Psyr_5034 0.60 -1.0
5,973,992 + Psyr_5034 0.60 -0.9
5,973,992 + Psyr_5034 0.60 +1.2
5,973,993 - Psyr_5034 0.60 -0.6
5,973,993 - Psyr_5034 0.60 +1.1
5,973,993 - Psyr_5034 0.60 +0.4
5,974,218 - Psyr_5034 0.76 +0.1
5,974,281 + Psyr_5034 0.81 -1.0
5,974,281 + Psyr_5034 0.81 +0.6
5,974,281 + Psyr_5034 0.81 -0.5
5,974,281 + Psyr_5034 0.81 -1.9
5,974,281 + Psyr_5034 0.81 +0.2
5,974,281 + Psyr_5034 0.81 +1.1
5,974,282 - +0.4
5,974,282 - Psyr_5034 0.81 +0.4
5,974,412 + -0.6
5,974,412 + -0.9
5,974,412 + +0.4
5,974,412 + +0.2
5,974,412 + -0.6
5,974,412 + -0.9
5,974,413 - +0.1
5,974,413 - -0.7
5,974,688 + -0.8
5,974,688 + -0.2
5,974,688 + -0.2
5,974,688 + -0.7
5,974,689 - -0.0
5,974,689 - -1.9
5,974,689 - +1.6
5,974,689 - -0.6
5,974,689 - +0.4
5,974,689 - +0.4
5,975,099 + Psyr_5035 0.44 -0.1
5,975,099 + Psyr_5035 0.44 -1.9
5,975,100 - Psyr_5035 0.44 -1.1
5,975,100 - Psyr_5035 0.44 -0.1
5,975,162 + Psyr_5035 0.51 -1.6
5,975,163 - Psyr_5035 0.51 -1.2
5,975,163 - Psyr_5035 0.51 -0.9
5,975,163 - Psyr_5035 0.51 +0.7
5,975,163 - Psyr_5035 0.51 -0.7
5,975,216 + Psyr_5035 0.57 +0.2
5,975,216 + Psyr_5035 0.57 -0.4
5,975,216 + Psyr_5035 0.57 +0.7
5,975,217 - Psyr_5035 0.57 +0.4
5,975,217 - Psyr_5035 0.57 -1.9
5,975,217 - Psyr_5035 0.57 -2.1
5,975,217 - Psyr_5035 0.57 +1.4
5,975,217 - Psyr_5035 0.57 -0.6
5,975,217 - Psyr_5035 0.57 +0.1
5,975,217 - Psyr_5035 0.57 -1.6
5,975,217 - Psyr_5035 0.57 +0.7
5,975,217 - Psyr_5035 0.57 -1.9
5,975,369 + Psyr_5035 0.74 +0.4
5,975,370 - Psyr_5035 0.74 +0.3
5,975,370 - Psyr_5035 0.74 -2.2
5,975,370 - Psyr_5035 0.74 -0.4
5,975,370 - Psyr_5035 0.74 -3.1
5,975,387 + Psyr_5035 0.76 -1.7
5,975,387 + Psyr_5035 0.76 +1.0
5,975,388 - Psyr_5035 0.76 +0.2
5,975,388 - Psyr_5035 0.76 +1.1
5,975,388 - Psyr_5035 0.76 +1.4
5,975,388 - Psyr_5035 0.76 -0.5
5,975,398 + Psyr_5035 0.77 +1.0
5,975,398 + Psyr_5035 0.77 +0.8
5,975,399 - Psyr_5035 0.77 +0.1
5,975,399 - Psyr_5035 0.77 -0.3
5,975,535 + +0.7
5,975,536 - -0.2
5,975,536 - +1.4
5,975,536 - -0.6
5,975,537 + -0.6
5,975,646 - +0.6
5,975,646 - +0.5
5,975,646 - -2.4
5,975,742 + +1.2
5,975,742 + +0.9
5,975,743 - -0.5
5,975,856 + +1.7
5,975,856 + -0.9
5,975,857 - -0.9
5,975,857 - -0.3
5,976,017 + Psyr_5036 0.25 -1.4
5,976,453 + Psyr_5036 0.74 +0.6
5,976,453 + Psyr_5036 0.74 -2.2
5,976,589 + Psyr_5036 0.89 -0.6
5,976,590 - Psyr_5036 0.89 +1.4
5,976,607 - -0.9

Or see this region's nucleotide sequence